TCONS_00021633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021633
Unique NameTCONS_00021633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021633 ID=TCONS_00021633|Name=TCONS_00021633|organism=Clytia hemisphaerica|type=transcript|length=1800bp
ATCGGAGGACGTTTCTCTTGTAACGTCAGCTGATATCAAGGAAAACTTCG
CTCATTTAAACTCTTTATATCGAAAAACCATCACACTCAGTCTACACTCA
GTCTCACTTTATTTGAATGACAAAAGACATGGAAAGAACCATCTAAAAAC
CAAGTAAAGTCGTCACAGTAAGTTTTAAACAAATATGAATGCCAGGTCCC
AGGTTTTTGAATTCAGTGCTGAATTATGTCAAGTAGAAGAAGTTGTCTGT
AGCTTTCTTCATACTTTGCTGTTCCATCGGTCAacaggaaaatttcatta
tcaGAAGGAAGGATCCTACACCGTAGGTACAATTGGTTATGAAGATGTAG
ATTGTCACTTCATTGATTGTTCATATGTACGCTGCTCCAGTGAAAAGCTT
AACAAAACTGTATTATCTTACGCAAAACAGTTCAAAGATGCCTTGAAAAA
TATGGAAAGTCATCGTAGCGGTCAAGTTTCTTTTGAGTTTTACCAAAAGC
GCAAGAATCCTTGGCCATTTCCGACGGAATCAATACCATGGGAAATGTGG
GTTTTGAAAATCAATATCGTAACTGTGACCAACGATGTAGACAGGGTTGC
TTTACGAGAAAAGTTGACGGATGCTGTGTGTGAGAAAATCAGAGTGATTT
GTGAGATTATCAACAAGCCTGATTATATTCCCAAAATGCCAAACGAGCCT
GATTTGACCAATATTTTTGACAACCAGTATACTGATGTTCAGCcatattt
acacaaattccaCTTCCAAACATCAGAACATGCTTCAGATACCAGTGTTG
GTAACACGATGAGACGATTGATCAAAGATACCTTCAACTACTAATCTAGG
TTGACTGATTGCATTTTCCAACTAGCtgaaagatgtattttgtttcATAC
ACAAGATTGTTTCTACCATTTCTTATTGAATATATTAAATGCTTTTTCAA
TTTAATTCTTTCATAAACTTTTACCACATTTCAAATTTGACTAAATGTCC
AATAAGGGGTTGCCTTAGcttaaaaattatgatttttaggTTTGACAAGG
AACAGTTTACTTAGGTTGGACCCCTGAAACCCCTGCAAGTTGTTCTACaa
agaaagttatgaaaatgatACTAAGCTAAAGCTTTTCAATTTATGAAGCT
TTATTGCTTAAGAAGCAAATTTGGTGTCTTTTCTGGGAGAGTCCTTGCTT
AAGTTAGGAAAGTGTTTCGTTTAATAGAAACAATATTTTATCCAAGGTAG
ATCaacaattttttgtaagcaaccgtttttatttatattttgagtGGTTA
TTTGAGCGTAAggaattcttttcttttaatttattataGTTTTTACTTTA
TTTCAGCTCTATTTAAATAATACAGTAAAATTGTTGCTTCCAAAAAGCTT
TCATGTTCATAATTTGAAAGATTGAAAACTTTCTCAGAATAATTATATGG
CATATAATCTTGATAGAATTTTTTCTACATTCTATACACCTAATAACCTT
CCTACAAAGAGCTGTATGAAAATGAATTCAGGAAGTGATCATCTTAATAA
TATTGAcatattcaaaatattgatcCTCATTTGATCTTAGGGTTGATGAA
TATGTGTAATCTAATATTGAACggtaaaagtaatttttatatTATTATCA
GACATATTGAATTGCttttaaatttgtaaataacATTTTGTTGTAAACTC
ATGTTGAtaatatgtaaatttttgaattatatCACTAAAATTATGACAAG
ATTTTAAACCTTTTCCTGattaaaatcttcttaaaaacTCTTATTACTAT
Run BLAST on NCBI

protein sequence of TCONS_00021633-protein

>TCONS_00021633-protein ID=TCONS_00021633-protein|Name=TCONS_00021633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MNARSQVFEFSAELCQVEEVVCSFLHTLLFHRSTGKFHYQKEGSYTVGTI
GYEDVDCHFIDCSYVRCSSEKLNKTVLSYAKQFKDALKNMESHRSGQVSF
EFYQKRKNPWPFPTESIPWEMWVLKINIVTVTNDVDRVALREKLTDAVCE
KIRVICEIINKPDYIPKMPNEPDLTNIFDNQYTDVQPYLHKFHFQTSEHA
SDTSVGNTMRRLIKDTFNY
Run BLAST on NCBI

transcript from alignment at sc0000391:69953..81767+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021633 ID=TCONS_00021633|Name=TCONS_00021633|organism=Clytia hemisphaerica|type=transcript|length=11815bp|location=Sequence derived from alignment at sc0000391:69953..81767+ (Clytia hemisphaerica)
ATCGGAGGACGTTTCTCTTGTAACGTCAGCTGATATCAAGGAAAACTTCG
CTCATTTAAACTCTTTATATCGAAAAACCATCACACTCAGTCTACACTCA
GTCTCACTTTATTTGAATGACAAAAGACATGGAAAGAACCATCTAAAAAC
CAAGTAAAGTCGTCACAGTAAGGTATACCTACTTTAGCTCTAATTTTTTG
AAGTATTTCACATATAGTTTACAAGACAaggttttgtgaaaattttcaca
ggaaagAAACTTCaatcagtctgggaaatcctctcaattgcacgctatGT
TCCAAGAGcataagcgcgcaattgcatggttataatttacacCCGCTCCC
GCCCCAGTTGAAACTGCTTAGGGATTTTAAAAGGGGTTCGGAATTCTCGC
TCTAATTCGGGGGCGGCGGCGAAGGCATGGATGGACACGATCAATAATAT
GAGACACCATTGTGGACATcataaaattgtccaaaaatttgttttgttaa
taagtttctgaattttaattcaatGTCATGGGTCGAAAATTTAACAGAAG
TTAGATATTACTAcgttctttaaatattttttttcaaaaaattaaacagt
gtagacctaactcttcatacaaaaattacgggaaacgcatatttggactt
tgtaccgtaagttggtctaatgtcgacatccgtcttctaatttcgacatc
cttctttatagataggaataataagaaggtcgaaatcactgatagactaa
agatttttcctctcatcgcgctaatcaaagtcaatcagcgattccgactt
tcctcagtttctattgttaCTATCTCtataaagaagggtgtcgaaattag
aagacggatgtcgacattagaccaacttacggtaccctatgctgcactca
agcacttgggccaaaatcccgcaaaggtgggacaaaaatcagttttttga
agtttgcaaaaaaacgccacatagaagatctttcaaattcagtatgtgaa
tagagcagtaaaaaaatacaacttttctatttttccttttttttgcaaaa
gttctagtaatgaaaaaaaaagggataatgataattgaatactatccatt
ggtgatccgcggcactatcgtaaagctagaatcgcttcgcgtactcttcg
cttgagaaaatgattgacagattgaagtttttcatccccgcggtgcgcgc
cgcgcgggagctcgggcgctctgcgagagttctcggctcaatcctcggac
cgcgctaaaatggtaaaatgagctgtgatagatcatttcgatggaagttg
ttggaatgtttacaaggctcttgacagaatgttgtttgttttattgtcaa
tgatgacagtgccgttataaattttgttagatctgacaaattgatgtttg
taagtgcactttatagttttgattcccattgaagaatcatattctggttt
tcatgttattagatgctgttttagagctttagagctagacTNNTTGACAA
agatatgataaaaaattaacattgttaactttttatcaattcaatgaaag
tctaaaaagtctgaaatcccccaaaatgaaaaataatttattactATGTT
TAATTTAGCCATGTattaaatatttacaaaatttatcagagcgttaacaa
aatattgataaatttgTAACACTGCTGGTACACTCAGAAAATTACGAAAA
TGGTTTGCTACCCTTGGAACCTAGCAAGTTAGATTTTAGACAATTTCATG
AGAAAGTGAATTTATAAGATAGAAATAACAATTGTTGCATGTATTTTGGa
cacaaaaatgataaatttttaacaattttggcaaaaattgaacttaatct
tagcaaggaaaaaatataagatatcaaGTTTTAAGTCAATTTGGGGCAAT
TTTTAGGTTTCAAATCAGGGTTCCAAAACTTAAATTAGTGAAACTAAATT
GCAGAAATGTACTTTCAGATAACTAATCTTTAAATCTGACAAGTTAAAGA
TATGCGGATGCAACGTTTCAGGATAATAGAATATGAAAATTTGTAATTCG
TAAGTACTCTAGATTTGGAGAAAACCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTATTCTAGGGTGTTTTTAATTAGGTTGTAGATCAGCTTCTT
GAGCATTTTGAAAGTCTTAATTGAGTATCTTTAAGTGGCAAAGACTAATA
AAACTATAACAGAAAGTATATATGTTTAAAATATTATCTTCTATTGTATG
TTAACATTTTATCATTTGAATTCTATCTTTTTCTGATTTCGCTCcattga
tactcaagattttgttAATATGCAAACAATTGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
GGTTaagtttttatctatttttgttcaagttattcaaaattgtaGTTCTG
CGTATAGTTTAAAGAGATAtgtatcaaaacaaagagttAAAAATAAACGG
GCAATCcaatttttacggaatcttcttctacgataaattttgagtaaaac
tgccctaggcttttgaaattcaacagagcttgcGGAAGGAATTGCatgtc
aaaaatataagaaattttaaagcgtgcaattgcacgcttaggCGGGCATc
acacaaataacttgtgttcgcgTCGTTTTTAGGTCTAAAAAacgagtcgg
tcggtcggtcggcaaaaaagacttgaaaaattgattttcaaaccGTGAGT
CGGGCGAAAATCAAATCTATCGGAAATTTGAAAAGCTACGCTAGAGTcac
accgaaaaacaaataacttttataaacTTACCTTCccaaaacattgaaga
agcctatACTAATCAAAGTAGATGAGAGAGAGAAGAGaggaaaaaacctt
aaaatcaaccagaatttacaacattttttCCAAAGCAAAAAGACGTACTT
TTcttgccgccatcttgaatttaattaaaatgagaattatattcactttc
tctagtccaataagacacACGATTTGACTCACGTGACTCAAATCGCcgtg
tcttattggactagagaaagcgaaagtgacataaattcaagatggcagcg
AGGAAAGTGGTATCTCTAATTGAAAAACCACAAGGGAGAATTAAAATGAA
TAatatacagggggtcacactactggctacaggagcTGCAAGCAAAGGAT
TAAGGCTAATGTTTTTGgcttttctgaaggacaaaaggtataggaaggtT
CACTAAAAGTGGGATAAAGCTGGGACTATATTATACTTATAAAAATCCGA
CGTTTTTCCGACTTTCCGACtcaaaaaagtcagaaaattaggaaaaatca
TCAGCTGGTCGGACGAcgcgaacacaagttatttgtgatgccCGCCTTAC
CGCAAAAGCCGTCACCCGTCAACCTTGCTTAACGCTTACagcccgtttca
gaacaatttcgataagcgtgtataaaaattctgccactttgataaccgtg
caattgcgcgcttacgacCTCGAAACATAAGcgtgagaggatttcccaga
ctgtctcaatagaccttttcgcctttccatccaccatattgaattgtatg
caaaaattatggtggccgaattgccgtggtgaaattcccttagagaatat
gcaaaacatatgcaaaaagaaagttgaaagtattaatataaaacttagcT
ACATGCATTTAATTGCCATTATATtataaagtgtaatcttgtagaagaaa
gattttaaatttgcttctcttgaaaattaaaaataattatattcgctcat
ctcttagaacaagcacttcaaaaatccataacattagacataaactctaa
actgaaaaatcaccagcaAAGGTAAAAagtaatccttattcggctgacgg
taaattattctcttGGGAATaaagccgccaaatgatcaaatgaaaacatt
gataatgtgtgacgtcataattactgcttttcaGTTTGCATGTtctgaaa
gtttgatgtgtgtactccgtcttcgtggaNTCAATCACCTAAGGGTAACC
TCAAAAACCCAACCTACACAGCCACAAATGGATACTAGTTCGAAATGTCA
CATTTACCCCTTTTATTTTTGACTACGAtcaatatgctatgtctttaaga
acaaatttctaaaaggcttttgttgttctgtaaatgtttctttttggatt
aagaaattcgatcttttattgttctaatgacagttaggaacatttggcga
gttcctgtacgcggccgcaatcaaaaaaatcataacaacactcattttAA
AATaaggcgttcgtgtcttttctcactttttttagcctagacgatgtagc
aaacaaagtaagtataagcacactgtgcttttaattggctgaaatttttt
ttcgtgtcggaaaaactttttcaaactttcagcaatgattgaccaactat
tataatgaaaattatccagcgcattttttatcttcttaccttcttcatct
tcattgaagCACTCAAGGTTTACTGAAGTTTtaaagcacataagatattc
ttataattattgatattcactgaaacaccgtTCTTTGTGCGCTGAGGTGG
AGTGtgtgacgtaactcgcgcggcaactNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNagatcatattgggcgttttgacGTTACCACCC
ATTGAAGCAGCGGGCGcctctgtctttccgcaactctttccaccatttta
gatggtcttaacaatagatccaaaaaaagggcgccataatctaggaagat
gatttgttttggtctccggctttgggaagtagcaatgtttttggttgatt
tcgatgggaaatggtaagaaacttaagtttacaagtgtcatttagttttt
gctggtttatagaatggcaggatcctggatggtttccctaactgaatgtt
tataatatttatttataagatgctttgttgtctttttaatctttgtgtaa
acttgcatatgttttgcatattttccaactaaatccaaccacgacttttt
cgttcctctatttttgcatacaattcaagatggcggatggaaaggcgaaa
aggtctatttcaatTGTGCTATTCCGTTTTTAAAccacccctgtatggtt
taaaaaatggaatattgacaaactttttcaggggggtctgagccttgatt
tttcaaggggtttttgttcctttttcagattttccaaggggtttattgaa
ggtttccagggggttgTCTTTTCATAAACTGAcatagcgactccagaagt
cacacaactttcgttgacgtcaaaccaaatgttttcaattttccgtgaac
tttgaacccttggaacttttttctatgtatgctaaagcgttccggttttt
accaAAAGAAAGCCCatgaccagacggtgtcaatcgaacaacttcaaaca
aaaatcgcaatcaaaccaatcaaacgtaatcgaacgcggtcgaataattg
tgattcgattgacgaacgtaatcaaatctcaatcgaacggtcgattcctg
ggtaatattcgattgtgttcgattgcgttcgagtaaggttcgattggttc
gattgatagttgactatgttcgattggttcgattgattgttaaTTACATT
gaattaatcttcgatttcgttcgattacgattatgttcaatgagtttgat
tgcgattaaattaaattggatcactctgttagagctttttagcgtgggca
gcCGAGCGCTTAAAtaccataccaaagcgaataaaatctaaatacaattg
aatcaatcgaacgtaatcaaatacaatcgaacgtaatcgaatacaatcga
acgtaatagAAACAATCGAACAGTAAATCCTGGGTTATATTCGcttgcgt
tcgacaatcaatTTGcgattattcgattgtgttcaattgcgttcaattga
ttcggcgttcaattcgttcgattgacaccgtctggccatGATCTTAGCTT
TTAGCAGAGGTATATATATAACACTATGGTAACAACTTCagaagattttc
aattttaatttttttttcgaaacctatcctatcttgtagagctttgaaaa
agaaagaaaatgaggggtcataggcctccagaggatataagtggttgtaa
agatattcaaattttagtgtcaaaaatttgactaaaatgtcaaaaaaagg
ttaggaaaataccagacccgatcaatcgaactcgTCGAACCAagcgaaca
atcgaactaatcaaactccatcgaacgattaaagtttgattaaaaaaatt
aatcaaacctaatcgaacactcacaatttttgaagcaatagcagttcggt
aagtaaaaagttcgattagttcgttgatattaaatcctcatatatctcct
ctcgcttgcaaaaactttgtcctggcacgcgattgccatttcgacagttc
ccggacttaacagcttgacgtttattgtacccAGATATTTGTCTATCGGG
AATAAAGTCCGTAacccctctgttgcgatttcgcgcgcagccgagtggcg
gaatactacgccccaacaaacttatctgatattccgatggcggattgccg
gtcgcccacgctaaagctctaaaggagcttaggagcgggccaatttccca
tcggagaggaatgatagtcggcctttgatgtgccgcatcctcagtcaggt
tcaactacccttgcgcttaaaggtaaaaatatttcggttggacccgccaa
tccccgaaaacaagggctgggttaccagacctcccgctgcaaaatccttg
gcGCGGTCTTGCAAAagtccgtaatctaaaccttctaGATATTGAAagtt
ttcccgaccttcagagctttagcgtgtcaaaagaaaatttcaccatctgg
gtgccagataaccaacaaaccgcctctggcgctaaaagaatacaggaaaa
gtgtgtaatccgttatcggaagtaatttcccgatttacattcagaatttg
gctttgaaaagaagctaatatacggtggcggagcagcacaaacttgtcaa
acaaaattggttcatcgaactgatcgaaccaaaACCCATtggtcgaactt
aatcgaacactcacaatcttaataaaaaatcttagagttagattaacttt
tttaatcgaactttaatcgttggatggagttcgattagttcgattatttg
attggttcgacaagtttgattgatcgggtctagaaaatagcttggaaaaa
ttcgaaaaatgtgtcaaaaaaaaaaagatttcccaGTCAGGCTTCTTCAA
TTTtacatatctctttttctagtgtagctagagacctgaaatttggaggg
agaattctttgatggtgttagaatatctACATATTATTAGCCGTACTGTG
TGTGTCATTTTGTCTGTGtgttatactttcgttttcgcaagcaatgtttt
gttctcgataagtttNTTTTGTCTGTGtgttatactttcgttttcgcaag
taatgttttgttctcgataagtttgttttgattgacagatcagatagagc
ctggtttagactttattcagcctttgttttgaaattttaaggcccttcta
catttagtaattttcatttttgcccAGCTTTGCCCAatcctgtttttctc
ttttcttttgtttgaaatgttttcaaatgtattttaacgatcgtatttat
taatgagattcgaattcttttcaaaacaaaacaactttcttttatagaaa
agaacatttcaagtaaatcaaaacataaaaatcaaaaagtttgtcgaaca
ataacagcattcaaagggggatgaaaagcaagagaagaaatttttatctt
tttcttcatacaaaaacattCAAGTGCAAGTGGTTGCCGCtactgttaaa
aactgtgtacgtcattttacatgtttaaattcgaaaagttatggtttaaa
aaaagcaatttaaaattgacttatttatctttttaaatctgataaaaaca
aagttgcactattctttgtggctttcccgctttttcctgaagaattctca
tttctacatttcactcctctttaccatgacattttctcaaattgtcgaaa
actgAACTCTCtccagaaacatttgttcatcgatagttgcaacttttttt
tctctcgtcggaaaacaattttgaaaatgttgcaaaaacgtTTGGcactt
taccaatttgccgtctagcccgagtccacagtgttatataccgctggaaa
gctaagatcacgggctttcttttagtaaaaaccggaacacTTAGCATaag
tttgaagggttcaaagttcacggaaaaatgaaacatttggtttgaggTCA
ACGAAGTTGCCTgacttctggagttgctaactATGGACATTCATAGTTTG
AATTAATAGGggcaatttcaaaatttaaagtctGAAAgtctgaaatttat
ttttcattttggacaaGACACAGTACAGATTTAGTGCAAATTGCCCTCTT
CCTTGACCTATTTTCTGtactataaaaaaaattctagaaaagaAAGACAG
GTAGAATCCAAACGATCAAAGCTTgcacggaagcacccaaaaaaaaCATA
CAAAGCAGCTTTGTAAGAAAAAATACTTCAACTGCTATTCATAAAAATAC
TTGTCAAAGACGATGGCGTATGTTAAAAGCATTTCCATAAAAGTCGACCC
AATACAGGgctgataaaaaagttgatgcaatcagtttcaaaattagaCAT
CCACAATGCGTcctccaaaatcaaaaataagaaaaagaagacaattgcga
tcaaaacattccagacACGGAGGAAAAAAGAAGACCTTACATTgcaagaa
aaaatcattccaGGGGCATGCCCACAGTCTTCAACTTTGACAGCTCCAAT
GCAAAGTTTCTAgttttggtttgaaataacAGAGGAAACCGGTATATTGA
ATCTCCAGATAGACAAATTCCTgcgtttttataaaataaagactCCATAG
AACGccactttcaaaataaaacaaaaagaaactgGAAAAAACATGCCAAA
GGGAAATGAAAAAGGGctatttcaaattaaaagaatgagtgaaaagaaat
ttaatacgAGAAAGTTTATGATGAGTTTAATTAGCTTAAGTAGTAGGATT
GTATTTTCGTAATATATACAGAGTAGATAATCTTTCAGTAGAATCCCAGA
AATATGCCAGAAAActcgtttttgcagattttcattggactttttcctta
catttctttgtttttttcacacaaaaacattattgattaAAGTGCCCACC
ATCAACCATGGTTCAactgtcaataaaactgatttttgaagctgaaactt
tctaaaaattgccggaacagctgattcatagtttgcacccccctaTAAAG
ACTGAAAATGTCAGAATTATGTTGGGAAAACCGtctttttccgatttttt
gcagaaatatGCGTATTAGCAAAGCCCAAAACAGGCTtgagtttttttct
tcacttgaaataaaaatcttaTAACTTTTGAGCCAGTTTGAGCTTTGAAT
TTATCTATCATTTCAGATCATTTAGGAATTTGGTGACTACACCTGCCTCA
AATTTGGCAATGACTATACTATTTCCCTTCATCTTTAGATTGAATTATTC
TGCTTACTTTCTGTTCATAGAATTATCTTCCTGAAATGAagatctttatt
tattttttgtttacttgtttacTTTTCTTTATTTCAGTTTTAAACAAATA
TGAATGCCAGGTCCCAGGTTTTTGAATTCAGTGCTGAATTATGTCAAGTA
GAAGAAGTTGTCTGTAGCTTTCTTCATACTTTGCTGTTCCATCGGTCAac
aggaaaatttcattatcaGAAGGAAGGATCCTACACCGTAGGTACAATTG
GTTATGAAGATGTAGATTGTCACTTCATTGATTGTTCATATGTACGCTGC
TCCAGTGAAAAGCTTAACAAAACTGTATTATCTTACGCAAAACAGTTCAA
AGATGCCTTGAAAAATATGGAAAGTCATCGTAGCGGTCAAGTTTCTTTTG
AGTTTTACCAAAAGCGCAAGAATCCTTGGCCATTTCCGACGGAATCAATA
CCATGGGAAATGTGGGTTTTGAAAATCAATATCGTAACTGTGACCAACGA
TGTAGACAGGGTTGCTTTACGAGAAAAGTTGACGGATGCTGTGTGTGAGA
AAATCAGAGTGATTTGTGAGATTATCAACAAGCCTGATTATATTCCCAAA
ATGCCAAACGAGCCTGATTTGACCAATATTTTTGACAACCAGTATACTGA
TGTTCAGCcatatttacacaaattccaCTTCCAAACATCAGAACATGCTT
CAGATACCAGTGTTGGTAACACGATGAGACGATTGATCAAAGATACCTTC
AACTACTAATCTAGGTTGACTGATTGCATTTTCCAACTAGCtgaaagatg
tattttgtttcATACACAAGATTGTTTCTACCATTTCTTATTGAATATAT
TAAATGCTTTTTCAATTTAATTCTTTCATAAACTTTTACCACATTTCAAA
TTTGACTAAATGTCCAATAAGGGGTTGCCTTAGcttaaaaattatgattt
ttaggTTTGACAAGGAACAGTTTACTTAGGTTGGACCCCTGAAACCCCTG
CAAGTTGTTCTACaaagaaagttatgaaaatgatACTAAGCTAAAGCTTT
TCAATTTATGAAGCTTTATTGCTTAAGAAGCAAATTTGGTGTCTTTTCTG
GGAGAGTCCTTGCTTAAGTTAGGAAAGTGTTTCGTTTAATAGAAACAATA
TTTTATCCAAGGTAGATCaacaattttttgtaagcaaccgtttttattta
tattttgagtGGTTATTTGAGCGTAAggaattcttttcttttaatttatt
ataGTTTTTACTTTATTTCAGCTCTATTTAAATAATACAGTAAAATTGTT
GCTTCCAAAAAGCTTTCATGTTCATAATTTGAAAGATTGAAAACTTTCTC
AGAATAATTATATGGCATATAATCTTGATAGAATTTTTTCTACATTCTAT
ACACCTAATAACCTTCCTACAAAGAGCTGTATGAAAATGAATTCAGGAAG
TGATCATCTTAATAATATTGAcatattcaaaatattgatcCTCATTTGAT
CTTAGGGTTGATGAATATGTGTAATCTAATATTGAACggtaaaagtaatt
tttatatTATTATCAGACATATTGAATTGCttttaaatttgtaaataacA
TTTTGTTGTAAACTCATGTTGAtaatatgtaaatttttgaattatatCAC
TAAAATTATGACAAGATTTTAAACCTTTTCCTGattaaaatcttcttaaa
aacTCTTATTACTAT

Coding sequence (CDS) from alignment at sc0000391:69953..81767+

>TCONS_00021633 ID=TCONS_00021633|Name=TCONS_00021633|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000391:69953..81767+ (Clytia hemisphaerica)
ATGAATGCCAGGTCCCAGGTTTTTGAATTCAGTGCTGAATTATGTCAAGT
AGAAGAAGTTGTCTGTAGCTTTCTTCATACTTTGCTGTTCCATCGGTCAa
caggaaaatttcattatcaGAAGGAAGGATCCTACACCGTAGGTACAATT
GGTTATGAAGATGTAGATTGTCACTTCATTGATTGTTCATATGTACGCTG
CTCCAGTGAAAAGCTTAACAAAACTGTATTATCTTACGCAAAACAGTTCA
AAGATGCCTTGAAAAATATGGAAAGTCATCGTAGCGGTCAAGTTTCTTTT
GAGTTTTACCAAAAGCGCAAGAATCCTTGGCCATTTCCGACGGAATCAAT
ACCATGGGAAATGTGGGTTTTGAAAATCAATATCGTAACTGTGACCAACG
ATGTAGACAGGGTTGCTTTACGAGAAAAGTTGACGGATGCTGTGTGTGAG
AAAATCAGAGTGATTTGTGAGATTATCAACAAGCCTGATTATATTCCCAA
AATGCCAAACGAGCCTGATTTGACCAATATTTTTGACAACCAGTATACTG
ATGTTCAGCcatatttacacaaattccaCTTCCAAACATCAGAACATGCT
TCAGATACCAGTGTTGGTAACACGATGAGACGATTGATCAAAGATACCTT
CAACTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012129XLOC_012129Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021633-proteinTCONS_00021633-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021633-exon-sc0000391-1491911889:69953..70124TCONS_00021633-exon-sc0000391-1491911889:69953..70124Clytia hemisphaericaexon
TCONS_00021633-exon-sc0000391-1510915933:69953..70124TCONS_00021633-exon-sc0000391-1510915933:69953..70124Clytia hemisphaericaexon
TCONS_00021633-exon-sc0000391-1575043694:69953..70124TCONS_00021633-exon-sc0000391-1575043694:69953..70124Clytia hemisphaericaexon
TCONS_00021633-exon-sc0000391-1491911889:80140..81767TCONS_00021633-exon-sc0000391-1491911889:80140..81767Clytia hemisphaericaexon
TCONS_00021633-exon-sc0000391-1510915933:80140..81767TCONS_00021633-exon-sc0000391-1510915933:80140..81767Clytia hemisphaericaexon
TCONS_00021633-exon-sc0000391-1575043694:80140..81767TCONS_00021633-exon-sc0000391-1575043694:80140..81767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:69953..81767 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.20168	4.21854	3.48424	3.50759	16.1785	12.523	14.5351	13.6076	12.364	11.7942	9.466	6.18265	7.40577	6.54218	5.81	5.18439	7.38233	8.49205	5.76016	7.44147	10.6846	8.18629	6.95439	7.52312	13.3404	14.2016	8.76791	4.5754	8.2683	6.78735
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012445ATG101
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
Blast
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BLAST of TCONS_00021633 vs. Swiss-Prot (Human)
Match: ATGA1 (Autophagy-related protein 101 OS=Homo sapiens GN=ATG101 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.181e-77
Identity = 113/217 (52.07%), Postives = 156/217 (71.89%), Query Frame = 2 
Query:  185 MNARSQVFEFSAELCQVEEVVCSFLHTLLFHRSTGKFHYQKEGSYTVGTIGYEDVDCHFIDCSYVRCSSEKLNKTVLSYAKQFKDALKNMESHRSGQVSFEFYQKRKNPWPFPTESIPWEMWVLKINIVTVTNDVDRVALREKLTDAVCEKIRVICEIINKPDYIPKMPNEPDLTNIFDNQYTDVQPYLHKFHFQTSEHASDTSVGNTMRRLIKDTF 835
            MN RS+V E S E  QVEE + + LHT+L HRSTGKFHY+KEG+Y++GT+G +DVDC FID +YVR SSE+L++ +     +FKDAL+N      GQ+S EFYQK+K+ WPF  E IPWE+W +K+++V +  + +R   REK+ + +CEKI  I E++N+ +Y+PKMP + ++ N+FD    DVQPYL+K  FQ ++ A  TSV  TMRRLIKDT 
Sbjct:    1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFIDFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWEVWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQITD-ALGTSVTTTMRRLIKDTL 216
The following BLAST results are available for this feature:
BLAST of TCONS_00021633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATGA12.181e-7752.07Autophagy-related protein 101 OS=Homo sapiens GN=A... [more]
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