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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021600 ID=TCONS_00021600|Name=TCONS_00021600|organism=Clytia hemisphaerica|type=transcript|length=1635bpRun BLAST on NCBI transcript from alignment at sc0000390:204679..212735- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021600 ID=TCONS_00021600|Name=TCONS_00021600|organism=Clytia hemisphaerica|type=transcript|length=8057bp|location=Sequence derived from alignment at sc0000390:204679..212735- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021600 vs. Swiss-Prot (Human)
Match: FACR2 (Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=1 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 5.419e-80 Identity = 134/360 (37.22%), Postives = 213/360 (59.17%), Query Frame = 2
Query: 2 STAYSQCNQEKAIMERFYPVTIEPGRILEAMEWMNDEMLAGFTEPLIDKYPNTYTFTKALAEHLIKKESENIPFMIVRPXXXXXXXXDPFPGWVDNYNGVSGIVVAISRGLLRSMHVPTVIKHDIVPVDYVSNCIITSTWYYATSRDKQPLICNCTSSGVNPTSFCDLGNMVNDFYTYDN-PLNCIIRRPNFKVT-NRYMNQYWQVFSHYLPAIILDGLSIITGSKPRFMNIYRTIDTSLTTLDYFIQNQWKWGNHNQQKILKAIPEDEVEVYDFDMRKIVWKTYYQEMMTGIKLYLVKEDQSELPKARSTHRRYKMVRWLSSTIFILLAGRFFFLKSERFRKLWFEALFSIYKFLHLLR 1075
STAYS CN K I E YP +EP +I++++EW++D ++ T LI +PN YT+TKAL E ++++ES N+ I+RPSIV ++ +PFPGWVDN NG +GI++A +G LR++ + D++PVD V N ++ WY A R K L+ + TS +NP ++ +G V T++ P RRPN T N + +QYW SH PAII D +TG KPR + + +++ L+YFI W+W +N + ++ + ++ V++FD+R++ W Y + + G+K YL+KED + +PKA+ +R + + +L +T L+A R +S+ R +WF + YKFL R
Sbjct: 152 STAYSNCNL-KHIDEVIYPCPVEPKKIIDSLEWLDDAIIDEITPKLIRDWPNIYTYTKALGEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKMG--VQVLATFEKIPFERPFRRPNANFTSNSFTSQYWNAVSHRAPAIIYDCYLRLTGRKPRMTKLMNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPKAKQRLKRLRNIHYLFNTALFLIAWRLLIARSQMARNVWFFIVSFCYKFLSYFR 508 The following BLAST results are available for this feature:
BLAST of TCONS_00021600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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