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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021587 ID=TCONS_00021587|Name=TCONS_00021587|organism=Clytia hemisphaerica|type=transcript|length=1609bp ATTCAGTACTTGCATGTCAATTAGTACAGAGGACACAGGAGAAGCAATGT TTAATACAATTTTCTACCAATTAACATAATAGCTCATGGTAATTGCGACA TTTATCGGTTGTCGTCgtacattttcttttttgcatCTCTTATTgtttag aaaaatctaaatctgTAAACAGTAAGCGAGTTACTCTCAGCAAGAAAcac acaattttttaaattgttgaaAATATGGGTTGGACCGTGAAATGATGATT GGATTGAAATGGTGCTTGACTTTTTTATTGTTAATACAGACGACCATTGT GGTTTTCCTTCAATCAACACTTTTCACAGaTGGATATGCATTTCCAAACG ATTCGGACCTCAGAGAGTTATGTTCGGAAAAGTTCAAAGCAAAGATTATC GGGAAGGCTCGACTGTGTATGATTCTCTTACGAATGAAACCTACTTCTGA TACAAGGTCCAATAAAAAGAAAGCTAATGAGGTTAAAAGTCATGTGAAAG TTGTGAAAATTGATGAATCCCCAGCCGCAATTAAAGAACATCCTACATCC ACAACCTCGCATCCAAAACTAGAAACGATAAACACAACGTTAAGCACTTC TCTTTCATCAAAGGAACCAAGTTTTGCGACTGGATTGAAATCTTCTTTAT CTACAACGAGACGAACTTCAACCACAAATGTTCAAACAGTAAGGCAGTTC ACAACACACACTACAACCCCAGAAACCTCCACCCCATCTTCAGATGCTCA GATAACAACTCTaaatttggaagaaaatgacaaaaaacatAAGCAGCCAT TTACCACTCAAAAAACCAACACACAAACGCCTTTGATATCGagttcaaat aaattttttcaacacACTTCAAAAAGTGCAACATTTTCAACCTCAGACAG ACCAACAAATTACCGTACCAGGAAAATTTTATCAGATACTCTGTCATCCG CACCTGCTGACCTAAAAGAAAGAAAGGGTGACAATCAACGGATTGATCGT GCATTACCCGATTTGCGAACAGACGAATCCATCAGTACATCGTCATCAGC GTCAATGACATTATCTCTCCCCATCATAATTATCGTACTATCTTCGTCCT TATTAACTTGTTGCTGATATCTGTGAACTGAGGTCATCTACATTAGtaga taaaaaatgataaaaagattGACAAAATATTTCATACGAACTAAAAATTA TAAGAATCAAATGCTTGGATAGCATTACTTGGAAATCTGTCTTTATTTTG GAAAGATTTATATAGTTTAAGTATTCGACCGTGAGGCTCCAATATGATTA TCTTCTTCAATCAGAATGGCTTTGTTTTGAGAACAGTGTGAAATTGTACT TCGTGGTTTCTTTATACAGCGTGTATactatattttaattttttttgttt tgaaaatctgaAGAATCTCTATATCTATATTTTCCGCTGTTAATATATTG TATTTAAGAAATATTACCCAACATCCAAAGAGAAGTATCTATATTTTGAA TAACCACCCTTGACATAAATCTGGTTACagatgttttttctttatcaaat ttcaTTCAAACTGGAAGCTTTCTCGATGCTTGAATTATGatagaaaatat taatttgat Run BLAST on NCBI protein sequence of TCONS_00021587-protein >TCONS_00021587-protein ID=TCONS_00021587-protein|Name=TCONS_00021587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MMIGLKWCLTFLLLIQTTIVVFLQSTLFTDGYAFPNDSDLRELCSEKFKA KIIGKARLCMILLRMKPTSDTRSNKKKANEVKSHVKVVKIDESPAAIKEH PTSTTSHPKLETINTTLSTSLSSKEPSFATGLKSSLSTTRRTSTTNVQTV RQFTTHTTTPETSTPSSDAQITTLNLEENDKKHKQPFTTQKTNTQTPLIS SSNKFFQHTSKSATFSTSDRPTNYRTRKILSDTLSSAPADLKERKGDNQR IDRALPDLRTDESISTSSSASMTLSLPIIIIVLSSSLLTCC Run BLAST on NCBI transcript from alignment at sc0000390:70510..75272- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021587 ID=TCONS_00021587|Name=TCONS_00021587|organism=Clytia hemisphaerica|type=transcript|length=4763bp|location=Sequence derived from alignment at sc0000390:70510..75272- (Clytia hemisphaerica) ATTCAGTACTTGCATGTCAATTAGTACAGAGGACACAGGAGAAGCAATGT
TTAATACAATTTTCTACCAATTAACATAATAGCTCATGGTAATTGCGACA
TTTATCGGTTGTCGTCGTACATTTTCTTTTTTGCATCTCTTATTGTTTAG
AAAAATCTAAATCTGTAAACAGTAAGCGAGTTACTCTCAGCAAGAAACAC
ACAATTTTTTAAATTGTTGAAAATATGGGTTGGACCGTGAAATGATGATT
GGATTGAAATGGTGCTTGACTTTTTTATTGTTAATACAGACGACCATTGT
GGTTTTCCTTCAATCAACACTTTTCACAGGTAAGAAGAATGTTTCTTAGC
AGGCAATTTTAGGCAAAATTGGGTACGGGGACGTACCGCTGGTCAAGGTC
TTTTTTTAGGCTCTGAAAATATCTGACAGGGTACCAAATTTAGTAATTTC
CAAGATGTGTATCTGACAGGGTCGCTATCTTTAGTCATTTTAACCACTTT
TCAGGGTGAAAATGGGAAGATTTTTTAGATTTTTCTTTCTGACAGGGTCC
CAAATTTATCAAATAATTCATATCTAACAGGGTCCTTTTCGAACTCCAGC
GGTACGTCCCCGTCAGCCGTCAAGGTCGTGTTCATACTACACATACGCGT
TTTAAAGAATGCGTGCTCAGGGGTTTCTCTAACACCTCTATTACCCTTAC
TATTTTCCCTCCAACCTTTTCGACCAGTGGATGACCATCTGCCTTAAGTG
TATATATTTTCGCGGGTACTATTTTCGAGAAACGTGTTTCACGAGTACTA
AATTTCACGATTGCGACCTTCTGGAGGTTTTTCGCGTGTATTAAATTTCG
CGAATAACTAAATTCTGGATATTTTTAAAGAGGATCAAAACAAGAAAAAG
ACTGATTTCGCTTGAAACTCAACGTAATAGGTGCAAAAATAGTGTCAAAA
TTAGAATACAGTATATGGCCCCCAAAACGGAGACGGCCCCCAAAACGGAG
GTTTTCATTAAAATGAAGATTCTGACTTGTAGATTTATCAGAATTAAACG
ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAGGAAATAAAGTAGAGATGTTAAAGGTTTTCATGCAGCAAAAA
TTTTTGTAAAATCTCTTTTCCTCTAGATTTGAGAGAAATTTCAAATTTGA
TCGCCGCTTTGGGGGCCACATACTGTAAATAGTGTGTTATAAAAAAAAAA
ATTTTCGCGTGATATTTAATTTCGCGATTTTGTATTTTTGAGAAATTTAA
AGAGTACTAATTTTCTCGGAAAAAAAGATTAAGGGGTTTTGGATTACTTT
AGGGAATTTTTGAATTGCTTAAGAGATTTCTGGGAGTTTTTGGAAAAATT
GACAACATTTTTTTGAGTGGTTTACTCTTTTTTGGGGATGTTTCATAAAA
ATTGCGAAAATTGTAATTTGTATTTCGAAAAACTTCCATGTTATTTTAAT
GATCTTAACATAAGGGTTTTCGGAATCCACCTCTCGCTCTATATACACAT
TTTTTATAAGAACATCTAAAATTGTAGAAACCTTCGGATGTTCTTAACTT
TTTGAGTTTGAAGCCTAAAATTGTTTTGAACATATTCTCATTTTCACCAT
TTTGTGAATAATTTTGTCCATCTTCTTAAGGAATCGGGTGTTTTAGAGTC
CGCAAAGTTTTAAGATGTTCTCAACTTGTTCTTAATATTTTGGTCATCGA
AGCCTTTTGTTCTTATATAGTTTTTTCTTATAAAAAAGGTAGTTAGGTTT
TTCATTCAAAAAATTAGCAAATAAAAACTAATAAAATATTGTTGATTAAA
CTTATTTTAATAAATAAGGATTAAGAATAATTGTATTTCGAAAGGCAAAC
CATGTTATTTTTTTCATGGGGATAAACTTCCGGCTAAAATCACTAAGTAG
GGAATTATCCGTAAGGTAGACGCAGAGAAATTTATAGATGTATGTGTCTT
TAATTGAATGAACTTTGATTTTATAAAGAAACCCGTGCTATGAAAATCCC
TTTTGGAACCCACACAAATTTTGGATTAATTGAACTTAATCCTATAATAA
TCTCGTAATGTAATTGAAAGGAGGTATTAATTTTCCTTCCAAAGAATACG
AAAGTAAATATCACGGGACTCATGTTGAGAGTTATAGTCTAAATACCGCC
TGATGTCTATAATACCCATTCATGAATTACGTAAACTAAAGCCCTTGTGA
AAGTAAGCATTGATTACCATATTACTTCGATCGAATAAACGCCCAGGGCG
TTTTTTTAATTTTTTCAATTTTAGGAGGGGCGTTTATTCGAGGGGGTATT
TAGAAAAAGGGGGCGTTTATTTGAAGTAATACGAAGTATCTTAATAACGT
TTTGACGTCGATAAATGCCACACTGTCTTCATCATTGCGAATAACTGTTT
TTTGTGGTAGTATAGTGGCCTTCCTACAGTAGTGTTCAGAATGCTATCAA
AGTGACGTAATCTTTTCCTTTATTTTTCTTCAGATGGATATGCATTTCCA
AACGATTCGGACCTCAGAGAGTTATGTTCGGAAAAGTTCAAAGCAAAGAT
TATCGGGAAGGCTCGACTGTGTATGATTCTCTTACGAATGAAACCTACTT
CTGATACAAGGTCCAATAAAAAGAAAGCTAATGAGGTTAAAAGTCATGTG
AAAGTTGTGAAAATTGATGAATCCCCAGCCGCAATTAAAGAACATCCTAC
ATCCACAACCTCGCATCCAAAACTAGAAACGATAAACACAACGTTAAGCA
CTTCTCTTTCATCAAAGGAACCAAGTTTTGCGACTGGATTGAAATCTTCT
TTATCTACAACGAGACGAACTTCAACCACAAATGTTCAAACAGTAAGGCA
GTTCACAACACACACTACAACCCCAGAAACCTCCACCCCATCTTCAGATG
CTCAGATAACAACTCTAAATTTGGAAGAAAATGACAAAAAACATAAGCAG
CCATTTACCACTCAAAAAACCAACACACAAACGCCTTTGATATCGAGTTC
AAATAAATTTTTTCAACACACTTCAAAAAGTGCAACATTTTCAACCTCAG
ACAGACCAACAAATTACCGTACCAGGAAAATTTTATCAGATACTCTGTCA
TCCGCACCTGCTGACCTAAAAGAAAGAAAGGGTGACAATCAACGGATTGA
TCGTGCATTACCCGATTTGCGAACAGACGAATCCATCAGTACATCGTCAT
CAGCGTCAATGACATTATCTCTCCCCATCATAATTATCGTACTATCTTCG
TCCTTATTAACTTGTTGCTGATATCTGTGAACTGAGGTCATCTACATTAG
TAGATAAAAAATGATAAAAAGATTGACAAAATATTTCATACGAACTAAAA
ATTATAAGAATCAAATGCTTGGATAGCATTACTTGGAAATCTGTCTTTAT
TTTGGAAAGATTTATATAGTTTAAGTATTCGACCGTGAGGCTCCAATATG
ATTATCTTCTTCAATCAGAATGGCTTTGTTTTGAGAACAGTGTGAAATTG
TACTTCGTGGTTTCTTTATACAGCGTGTATACTATATTTTAATTTTTTTT
GTTTTGAAAATCTGAAGAATCTCTATATCTATATTTTCCGCTGTTAATAT
ATTGTATTTAAGAAATATTACCCAACATCCAAAGAGAAGTATCTATATTT
TGAATAACCACCCTTGACATAAATCTGGTTACAGATGTTTTTTCTTTATC
AAATTTCATTCAAACTGGAAGCTTTCTCGATGCTTGAATTATGATAGAAA
ATATTAATTTGAT Coding sequence (CDS) from alignment at sc0000390:70510..75272- >TCONS_00021587 ID=TCONS_00021587|Name=TCONS_00021587|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000390:70510..75272- (Clytia hemisphaerica) ATGGATATGCATTTCCAAACGATTCGGACCTCAGAGAGTTATGTTCGGAA AAGTTCAAAGCAAAGATTATCGGGAAGGCTCGACTGTGTATGATTCTCTT ACGAATGAAACCTACTTCTGATACAAGGTCCAATAAAAAGAAAGCTAATG AGGTTAAAAGTCATGTGAAAGTTGTGAAAATTGATGAATCCCCAGCCGCA ATTAAAGAACATCCTACATCCACAACCTCGCATCCAAAACTAGAAACGAT AAACACAACGTTAAGCACTTCTCTTTCATCAAAGGAACCAAGTTTTGCGA CTGGATTGAAATCTTCTTTATCTACAACGAGACGAACTTCAACCACAAAT GTTCAAACAGTAAGGCAGTTCACAACACACACTACAACCCCAGAAACCTC CACCCCATCTTCAGATGCTCAGATAACAACTCTAAATTTGGAAGAAAATG ACAAAAAACATAAGCAGCCATTTACCACTCAAAAAACCAACACACAAACG CCTTTGATATCGAGTTCAAATAAATTTTTTCAACACACTTCAAAAAGTGC AACATTTTCAACCTCAGACAGACCAACAAATTACCGTACCAGGAAAATTT TATCAGATACTCTGTCATCCGCACCTGCTGACCTAAAAGAAAGAAAGGGT GACAATCAACGGATTGATCGTGCATTACCCGATTTGCGAACAGACGAATC CATCAGTACATCGTCATCAGCGTCAATGACATTATCTCTCCCCATCATAA TTATCGTACTATCTTCGTCCTTATTAACTTGTTGCTGAATGATGATTGGA TTGAAATGGTGCTTGACTTTTTTATTGTTAATACAGACGACCATTGTGGT TTTCCTTCAATCAACACTTTTCACAGATGGATATGCATTTCCAAACGATT CGGACCTCAGAGAGTTATGTTCGGAAAAGTTCAAAGCAAAGATTATCGGG AAGGCTCGACTGTGTATGATTCTCTTACGAATGAAACCTACTTCTGATAC AAGGTCCAATAAAAAGAAAGCTAATGAGGTTAAAAGTCATGTGAAAGTTG TGAAAATTGATGAATCCCCAGCCGCAATTAAAGAACATCCTACATCCACA ACCTCGCATCCAAAACTAGAAACGATAAACACAACGTTAAGCACTTCTCT TTCATCAAAGGAACCAAGTTTTGCGACTGGATTGAAATCTTCTTTATCTA CAACGAGACGAACTTCAACCACAAATGTTCAAACAGTAAGGCAGTTCACA ACACACACTACAACCCCAGAAACCTCCACCCCATCTTCAGATGCTCAGAT AACAACTCTAAATTTGGAAGAAAATGACAAAAAACATAAGCAGCCATTTA CCACTCAAAAAACCAACACACAAACGCCTTTGATATCGAGTTCAAATAAA TTTTTTCAACACACTTCAAAAAGTGCAACATTTTCAACCTCAGACAGACC AACAAATTACCGTACCAGGAAAATTTTATCAGATACTCTGTCATCCGCAC CTGCTGACCTAAAAGAAAGAAAGGGTGACAATCAACGGATTGATCGTGCA TTACCCGATTTGCGAACAGACGAATCCATCAGTACATCGTCATCAGCGTC AATGACATTATCTCTCCCCATCATAATTATCGTACTATCTTCGTCCTTAT TAACTTGTTGCTGAATGATGATTGGATTGAAATGGTGCTTGACTTTTTTA TTGTTAATACAGACGACCATTGTGGTTTTCCTTCAATCAACACTTTTCAC AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00021587-exon-sc0000390-1575043694:74944..75272 | TCONS_00021587-exon-sc0000390-1575043694:74944..75272 | Clytia hemisphaerica | exon |
TCONS_00021587-exon-sc0000390-1575043694:70510..71789 | TCONS_00021587-exon-sc0000390-1575043694:70510..71789 | Clytia hemisphaerica | exon |
TCONS_00021587-exon-sc0000390-1510915933:74944..75272 | TCONS_00021587-exon-sc0000390-1510915933:74944..75272 | Clytia hemisphaerica | exon |
TCONS_00021587-exon-sc0000390-1510915933:70510..71789 | TCONS_00021587-exon-sc0000390-1510915933:70510..71789 | Clytia hemisphaerica | exon |
TCONS_00021587-exon-sc0000390-1491911889:74944..75272 | TCONS_00021587-exon-sc0000390-1491911889:74944..75272 | Clytia hemisphaerica | exon |
TCONS_00021587-exon-sc0000390-1491911889:70510..71789 | TCONS_00021587-exon-sc0000390-1491911889:70510..71789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000390 | supercontig | sc0000390:70510..75272 - |
Blast
The following BLAST results are available for this feature:
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