TCONS_00021587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021587
Unique NameTCONS_00021587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021587 ID=TCONS_00021587|Name=TCONS_00021587|organism=Clytia hemisphaerica|type=transcript|length=1609bp
ATTCAGTACTTGCATGTCAATTAGTACAGAGGACACAGGAGAAGCAATGT
TTAATACAATTTTCTACCAATTAACATAATAGCTCATGGTAATTGCGACA
TTTATCGGTTGTCGTCgtacattttcttttttgcatCTCTTATTgtttag
aaaaatctaaatctgTAAACAGTAAGCGAGTTACTCTCAGCAAGAAAcac
acaattttttaaattgttgaaAATATGGGTTGGACCGTGAAATGATGATT
GGATTGAAATGGTGCTTGACTTTTTTATTGTTAATACAGACGACCATTGT
GGTTTTCCTTCAATCAACACTTTTCACAGaTGGATATGCATTTCCAAACG
ATTCGGACCTCAGAGAGTTATGTTCGGAAAAGTTCAAAGCAAAGATTATC
GGGAAGGCTCGACTGTGTATGATTCTCTTACGAATGAAACCTACTTCTGA
TACAAGGTCCAATAAAAAGAAAGCTAATGAGGTTAAAAGTCATGTGAAAG
TTGTGAAAATTGATGAATCCCCAGCCGCAATTAAAGAACATCCTACATCC
ACAACCTCGCATCCAAAACTAGAAACGATAAACACAACGTTAAGCACTTC
TCTTTCATCAAAGGAACCAAGTTTTGCGACTGGATTGAAATCTTCTTTAT
CTACAACGAGACGAACTTCAACCACAAATGTTCAAACAGTAAGGCAGTTC
ACAACACACACTACAACCCCAGAAACCTCCACCCCATCTTCAGATGCTCA
GATAACAACTCTaaatttggaagaaaatgacaaaaaacatAAGCAGCCAT
TTACCACTCAAAAAACCAACACACAAACGCCTTTGATATCGagttcaaat
aaattttttcaacacACTTCAAAAAGTGCAACATTTTCAACCTCAGACAG
ACCAACAAATTACCGTACCAGGAAAATTTTATCAGATACTCTGTCATCCG
CACCTGCTGACCTAAAAGAAAGAAAGGGTGACAATCAACGGATTGATCGT
GCATTACCCGATTTGCGAACAGACGAATCCATCAGTACATCGTCATCAGC
GTCAATGACATTATCTCTCCCCATCATAATTATCGTACTATCTTCGTCCT
TATTAACTTGTTGCTGATATCTGTGAACTGAGGTCATCTACATTAGtaga
taaaaaatgataaaaagattGACAAAATATTTCATACGAACTAAAAATTA
TAAGAATCAAATGCTTGGATAGCATTACTTGGAAATCTGTCTTTATTTTG
GAAAGATTTATATAGTTTAAGTATTCGACCGTGAGGCTCCAATATGATTA
TCTTCTTCAATCAGAATGGCTTTGTTTTGAGAACAGTGTGAAATTGTACT
TCGTGGTTTCTTTATACAGCGTGTATactatattttaattttttttgttt
tgaaaatctgaAGAATCTCTATATCTATATTTTCCGCTGTTAATATATTG
TATTTAAGAAATATTACCCAACATCCAAAGAGAAGTATCTATATTTTGAA
TAACCACCCTTGACATAAATCTGGTTACagatgttttttctttatcaaat
ttcaTTCAAACTGGAAGCTTTCTCGATGCTTGAATTATGatagaaaatat
taatttgat
Run BLAST on NCBI

protein sequence of TCONS_00021587-protein

>TCONS_00021587-protein ID=TCONS_00021587-protein|Name=TCONS_00021587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MMIGLKWCLTFLLLIQTTIVVFLQSTLFTDGYAFPNDSDLRELCSEKFKA
KIIGKARLCMILLRMKPTSDTRSNKKKANEVKSHVKVVKIDESPAAIKEH
PTSTTSHPKLETINTTLSTSLSSKEPSFATGLKSSLSTTRRTSTTNVQTV
RQFTTHTTTPETSTPSSDAQITTLNLEENDKKHKQPFTTQKTNTQTPLIS
SSNKFFQHTSKSATFSTSDRPTNYRTRKILSDTLSSAPADLKERKGDNQR
IDRALPDLRTDESISTSSSASMTLSLPIIIIVLSSSLLTCC
Run BLAST on NCBI

transcript from alignment at sc0000390:70510..75272-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021587 ID=TCONS_00021587|Name=TCONS_00021587|organism=Clytia hemisphaerica|type=transcript|length=4763bp|location=Sequence derived from alignment at sc0000390:70510..75272- (Clytia hemisphaerica)
ATTCAGTACTTGCATGTCAATTAGTACAGAGGACACAGGAGAAGCAATGT TTAATACAATTTTCTACCAATTAACATAATAGCTCATGGTAATTGCGACA TTTATCGGTTGTCGTCGTACATTTTCTTTTTTGCATCTCTTATTGTTTAG AAAAATCTAAATCTGTAAACAGTAAGCGAGTTACTCTCAGCAAGAAACAC ACAATTTTTTAAATTGTTGAAAATATGGGTTGGACCGTGAAATGATGATT GGATTGAAATGGTGCTTGACTTTTTTATTGTTAATACAGACGACCATTGT GGTTTTCCTTCAATCAACACTTTTCACAGGTAAGAAGAATGTTTCTTAGC AGGCAATTTTAGGCAAAATTGGGTACGGGGACGTACCGCTGGTCAAGGTC TTTTTTTAGGCTCTGAAAATATCTGACAGGGTACCAAATTTAGTAATTTC CAAGATGTGTATCTGACAGGGTCGCTATCTTTAGTCATTTTAACCACTTT TCAGGGTGAAAATGGGAAGATTTTTTAGATTTTTCTTTCTGACAGGGTCC CAAATTTATCAAATAATTCATATCTAACAGGGTCCTTTTCGAACTCCAGC GGTACGTCCCCGTCAGCCGTCAAGGTCGTGTTCATACTACACATACGCGT TTTAAAGAATGCGTGCTCAGGGGTTTCTCTAACACCTCTATTACCCTTAC TATTTTCCCTCCAACCTTTTCGACCAGTGGATGACCATCTGCCTTAAGTG TATATATTTTCGCGGGTACTATTTTCGAGAAACGTGTTTCACGAGTACTA AATTTCACGATTGCGACCTTCTGGAGGTTTTTCGCGTGTATTAAATTTCG CGAATAACTAAATTCTGGATATTTTTAAAGAGGATCAAAACAAGAAAAAG ACTGATTTCGCTTGAAACTCAACGTAATAGGTGCAAAAATAGTGTCAAAA TTAGAATACAGTATATGGCCCCCAAAACGGAGACGGCCCCCAAAACGGAG GTTTTCATTAAAATGAAGATTCTGACTTGTAGATTTATCAGAATTAAACG ATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNCAGGAAATAAAGTAGAGATGTTAAAGGTTTTCATGCAGCAAAAA TTTTTGTAAAATCTCTTTTCCTCTAGATTTGAGAGAAATTTCAAATTTGA TCGCCGCTTTGGGGGCCACATACTGTAAATAGTGTGTTATAAAAAAAAAA ATTTTCGCGTGATATTTAATTTCGCGATTTTGTATTTTTGAGAAATTTAA AGAGTACTAATTTTCTCGGAAAAAAAGATTAAGGGGTTTTGGATTACTTT AGGGAATTTTTGAATTGCTTAAGAGATTTCTGGGAGTTTTTGGAAAAATT GACAACATTTTTTTGAGTGGTTTACTCTTTTTTGGGGATGTTTCATAAAA ATTGCGAAAATTGTAATTTGTATTTCGAAAAACTTCCATGTTATTTTAAT GATCTTAACATAAGGGTTTTCGGAATCCACCTCTCGCTCTATATACACAT TTTTTATAAGAACATCTAAAATTGTAGAAACCTTCGGATGTTCTTAACTT TTTGAGTTTGAAGCCTAAAATTGTTTTGAACATATTCTCATTTTCACCAT TTTGTGAATAATTTTGTCCATCTTCTTAAGGAATCGGGTGTTTTAGAGTC CGCAAAGTTTTAAGATGTTCTCAACTTGTTCTTAATATTTTGGTCATCGA AGCCTTTTGTTCTTATATAGTTTTTTCTTATAAAAAAGGTAGTTAGGTTT TTCATTCAAAAAATTAGCAAATAAAAACTAATAAAATATTGTTGATTAAA CTTATTTTAATAAATAAGGATTAAGAATAATTGTATTTCGAAAGGCAAAC CATGTTATTTTTTTCATGGGGATAAACTTCCGGCTAAAATCACTAAGTAG GGAATTATCCGTAAGGTAGACGCAGAGAAATTTATAGATGTATGTGTCTT TAATTGAATGAACTTTGATTTTATAAAGAAACCCGTGCTATGAAAATCCC TTTTGGAACCCACACAAATTTTGGATTAATTGAACTTAATCCTATAATAA TCTCGTAATGTAATTGAAAGGAGGTATTAATTTTCCTTCCAAAGAATACG AAAGTAAATATCACGGGACTCATGTTGAGAGTTATAGTCTAAATACCGCC TGATGTCTATAATACCCATTCATGAATTACGTAAACTAAAGCCCTTGTGA AAGTAAGCATTGATTACCATATTACTTCGATCGAATAAACGCCCAGGGCG TTTTTTTAATTTTTTCAATTTTAGGAGGGGCGTTTATTCGAGGGGGTATT TAGAAAAAGGGGGCGTTTATTTGAAGTAATACGAAGTATCTTAATAACGT TTTGACGTCGATAAATGCCACACTGTCTTCATCATTGCGAATAACTGTTT TTTGTGGTAGTATAGTGGCCTTCCTACAGTAGTGTTCAGAATGCTATCAA AGTGACGTAATCTTTTCCTTTATTTTTCTTCAGATGGATATGCATTTCCA AACGATTCGGACCTCAGAGAGTTATGTTCGGAAAAGTTCAAAGCAAAGAT TATCGGGAAGGCTCGACTGTGTATGATTCTCTTACGAATGAAACCTACTT CTGATACAAGGTCCAATAAAAAGAAAGCTAATGAGGTTAAAAGTCATGTG AAAGTTGTGAAAATTGATGAATCCCCAGCCGCAATTAAAGAACATCCTAC ATCCACAACCTCGCATCCAAAACTAGAAACGATAAACACAACGTTAAGCA CTTCTCTTTCATCAAAGGAACCAAGTTTTGCGACTGGATTGAAATCTTCT TTATCTACAACGAGACGAACTTCAACCACAAATGTTCAAACAGTAAGGCA GTTCACAACACACACTACAACCCCAGAAACCTCCACCCCATCTTCAGATG CTCAGATAACAACTCTAAATTTGGAAGAAAATGACAAAAAACATAAGCAG CCATTTACCACTCAAAAAACCAACACACAAACGCCTTTGATATCGAGTTC AAATAAATTTTTTCAACACACTTCAAAAAGTGCAACATTTTCAACCTCAG ACAGACCAACAAATTACCGTACCAGGAAAATTTTATCAGATACTCTGTCA TCCGCACCTGCTGACCTAAAAGAAAGAAAGGGTGACAATCAACGGATTGA TCGTGCATTACCCGATTTGCGAACAGACGAATCCATCAGTACATCGTCAT CAGCGTCAATGACATTATCTCTCCCCATCATAATTATCGTACTATCTTCG TCCTTATTAACTTGTTGCTGATATCTGTGAACTGAGGTCATCTACATTAG TAGATAAAAAATGATAAAAAGATTGACAAAATATTTCATACGAACTAAAA ATTATAAGAATCAAATGCTTGGATAGCATTACTTGGAAATCTGTCTTTAT TTTGGAAAGATTTATATAGTTTAAGTATTCGACCGTGAGGCTCCAATATG ATTATCTTCTTCAATCAGAATGGCTTTGTTTTGAGAACAGTGTGAAATTG TACTTCGTGGTTTCTTTATACAGCGTGTATACTATATTTTAATTTTTTTT GTTTTGAAAATCTGAAGAATCTCTATATCTATATTTTCCGCTGTTAATAT ATTGTATTTAAGAAATATTACCCAACATCCAAAGAGAAGTATCTATATTT TGAATAACCACCCTTGACATAAATCTGGTTACAGATGTTTTTTCTTTATC AAATTTCATTCAAACTGGAAGCTTTCTCGATGCTTGAATTATGATAGAAA ATATTAATTTGAT

Coding sequence (CDS) from alignment at sc0000390:70510..75272-

>TCONS_00021587 ID=TCONS_00021587|Name=TCONS_00021587|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000390:70510..75272- (Clytia hemisphaerica)
ATGGATATGCATTTCCAAACGATTCGGACCTCAGAGAGTTATGTTCGGAA
AAGTTCAAAGCAAAGATTATCGGGAAGGCTCGACTGTGTATGATTCTCTT
ACGAATGAAACCTACTTCTGATACAAGGTCCAATAAAAAGAAAGCTAATG
AGGTTAAAAGTCATGTGAAAGTTGTGAAAATTGATGAATCCCCAGCCGCA
ATTAAAGAACATCCTACATCCACAACCTCGCATCCAAAACTAGAAACGAT
AAACACAACGTTAAGCACTTCTCTTTCATCAAAGGAACCAAGTTTTGCGA
CTGGATTGAAATCTTCTTTATCTACAACGAGACGAACTTCAACCACAAAT
GTTCAAACAGTAAGGCAGTTCACAACACACACTACAACCCCAGAAACCTC
CACCCCATCTTCAGATGCTCAGATAACAACTCTAAATTTGGAAGAAAATG
ACAAAAAACATAAGCAGCCATTTACCACTCAAAAAACCAACACACAAACG
CCTTTGATATCGAGTTCAAATAAATTTTTTCAACACACTTCAAAAAGTGC
AACATTTTCAACCTCAGACAGACCAACAAATTACCGTACCAGGAAAATTT
TATCAGATACTCTGTCATCCGCACCTGCTGACCTAAAAGAAAGAAAGGGT
GACAATCAACGGATTGATCGTGCATTACCCGATTTGCGAACAGACGAATC
CATCAGTACATCGTCATCAGCGTCAATGACATTATCTCTCCCCATCATAA
TTATCGTACTATCTTCGTCCTTATTAACTTGTTGCTGAATGATGATTGGA
TTGAAATGGTGCTTGACTTTTTTATTGTTAATACAGACGACCATTGTGGT
TTTCCTTCAATCAACACTTTTCACAGATGGATATGCATTTCCAAACGATT
CGGACCTCAGAGAGTTATGTTCGGAAAAGTTCAAAGCAAAGATTATCGGG
AAGGCTCGACTGTGTATGATTCTCTTACGAATGAAACCTACTTCTGATAC
AAGGTCCAATAAAAAGAAAGCTAATGAGGTTAAAAGTCATGTGAAAGTTG
TGAAAATTGATGAATCCCCAGCCGCAATTAAAGAACATCCTACATCCACA
ACCTCGCATCCAAAACTAGAAACGATAAACACAACGTTAAGCACTTCTCT
TTCATCAAAGGAACCAAGTTTTGCGACTGGATTGAAATCTTCTTTATCTA
CAACGAGACGAACTTCAACCACAAATGTTCAAACAGTAAGGCAGTTCACA
ACACACACTACAACCCCAGAAACCTCCACCCCATCTTCAGATGCTCAGAT
AACAACTCTAAATTTGGAAGAAAATGACAAAAAACATAAGCAGCCATTTA
CCACTCAAAAAACCAACACACAAACGCCTTTGATATCGAGTTCAAATAAA
TTTTTTCAACACACTTCAAAAAGTGCAACATTTTCAACCTCAGACAGACC
AACAAATTACCGTACCAGGAAAATTTTATCAGATACTCTGTCATCCGCAC
CTGCTGACCTAAAAGAAAGAAAGGGTGACAATCAACGGATTGATCGTGCA
TTACCCGATTTGCGAACAGACGAATCCATCAGTACATCGTCATCAGCGTC
AATGACATTATCTCTCCCCATCATAATTATCGTACTATCTTCGTCCTTAT
TAACTTGTTGCTGAATGATGATTGGATTGAAATGGTGCTTGACTTTTTTA
TTGTTAATACAGACGACCATTGTGGTTTTCCTTCAATCAACACTTTTCAC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012108XLOC_012108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021587-proteinTCONS_00021587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021587-exon-sc0000390-1575043694:74944..75272TCONS_00021587-exon-sc0000390-1575043694:74944..75272Clytia hemisphaericaexon
TCONS_00021587-exon-sc0000390-1575043694:70510..71789TCONS_00021587-exon-sc0000390-1575043694:70510..71789Clytia hemisphaericaexon
TCONS_00021587-exon-sc0000390-1510915933:74944..75272TCONS_00021587-exon-sc0000390-1510915933:74944..75272Clytia hemisphaericaexon
TCONS_00021587-exon-sc0000390-1510915933:70510..71789TCONS_00021587-exon-sc0000390-1510915933:70510..71789Clytia hemisphaericaexon
TCONS_00021587-exon-sc0000390-1491911889:74944..75272TCONS_00021587-exon-sc0000390-1491911889:74944..75272Clytia hemisphaericaexon
TCONS_00021587-exon-sc0000390-1491911889:70510..71789TCONS_00021587-exon-sc0000390-1491911889:70510..71789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:70510..75272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05264 2.14992 0.946858 1.26321 19.1033 11.018 5.86443 5.76472 3.90789 5.58118 1.12966 3.59483 24.0839 21.1608 4.21615 4.01498 14.7242 21.6239 53.0685 54.1229 3.5527 4.19477 2.12107 3.30199 4.08117 5.3421 28.4585 9.56764 0.984438 1.20358
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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