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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021527 ID=TCONS_00021527|Name=TCONS_00021527|organism=Clytia hemisphaerica|type=transcript|length=1505bp
CTGAACAGAAGagaagaatttgataaaatatatgATAACGTATTATTATA
ATAAAATggtaaaacttttatttttaatgatcatgaatcaaaaaaattta
aataatatagaaatcaaaaattattttaaacgCCCTCTCTAAGTAAAGGT
ATAAGAGTTTATTTTTTACaggtaaaatattaaaatttcagTACCTGCGG
TGTTACGTTTTGACGTATTAATTTGTACATtataacaaaataacaaaaaa
atggaTAAAAGCTTTTCATACTATGGAAATATTAAATAACGTATAGCAAT
ATAAAAATATGAAAGTAAGCATCATCGGTCGGATAAAAAAGTCCGAAATA
TTTGTATTGTTTCTAAAGGGGTACAAACTGTTTCAGAGGATTTTTAAgaa
ctttaaaaatctttgacAATTTTATAGGAATTACAGCTGAATATGATAGA
TAGTACTTACGGCAATACAGTATACAATACCATTAAAGAGATACCGAAAT
TTAAATAAGTTAAAATTCCCTTGGATAAATAAGTCTTAATTTGCTCGAAA
TCGAATATGTTCAAACCTCCCCAGCTTCAGACGTAGACCGGACACTTTTG
ACAGAGATCAATCTTTATCATGTCATGACTCTTAATTTGTTTTCCCTATT
AGACGTACCATGTAACATTTTAAATcccttttaaaaatagaaaaccaaat
aaaaaaatcaagtaacAAATACCATATCTACAGTATTATATCAATAATAT
AgaagaaacaagaaaaataacataaattttttaaaaacacatATGGTCTA
AGGTCTaagatttgtaataaaaaaatcatattttcaatttgtataaaaat
agTGGTGCAAAATATGGACAGTACGAACTAGTCTGCGAGAATTATTTTGT
TACGTTTAGTTCGTATTAGAGTGATAATGTAATATATTATATATCACCCA
AATGTTGGGAGTTTTCTTCTAAAAACCAGGATTATCCTTGTGTaccaaaa
aatgtattttgaagTAAACTTATACGAAACTCTTGGAGCCAATTTCGGAT
AAAAAATACATGATCATGAGCTGCAGGTAATAAGCAAGATATATATCAAT
TAATACCAGACGATTATACCGGTAAGCTAACCTCAAACAGCAAAGATCAT
GTTAACCCAAGTAATATCTCGTAACTTTTGGTATCTTTAGAAGATCGAAT
AAAAAAGCAGCCAGTCATTCCTTCTGTTCATACCCGGGCTCCTCCAAACA
GCAAGCTTAATCAGGGCCTTCCAATGATGGTCAAGCAATTGATTGCAGCC
AACAACCCCAATGAAGCCccaataaaatctattttcttatATTCTTATAC
AAGGAATCCAACATATTTATCATCTTGCTCGTCAATATACTCATTGTCAC
TTCTGTAAGGTTTGGAACTAGCGATAGATGAGGGCGTTGGTGAATCACGC
CCGTTGACGCCCTGGTGAAAACCATTGGGTGGTGGAGGAGGTGGTTGATC
GTAAG Run BLAST on NCBI transcript from alignment at sc0000389:70769..72326+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021527 ID=TCONS_00021527|Name=TCONS_00021527|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at sc0000389:70769..72326+ (Clytia hemisphaerica)
CTGAACAGAAGagaagaatttgataaaatatatgATAACGTATTATTATA
ATAAAATggtaaaacttttatttttaatgatcatgaatcaaaaaaattta
aataatatagaaatcaaaaattattttaaacgCCCTCTCTAAGTAAAGGT
ATAAGAGTTTATTTTTTACaggtaaaatattaaaatttcagTACCTGCGG
TGTTACGTTTTGACGTATTAATTTGTACATtataacaaaataacaaaaaa
atggaTAAAAGCTTTTCATACTATGGAAATATTAAATAACGTATAGCAAT
ATAAAAATATGAAAGTAAGCATCATCGGTCGGATAAAAAAGTCCGAAATA
TTTGTATTGTTTCTAAAGGGGTACAAACTGTTTCAGAGGATTTTTAAgaa
ctttaaaaatctttgacAATTTTATAGGAATTACAGCTGAATATGATAGA
TAGTACTTACGGCAATACAGTATACAATACCATTAAAGAGATACCGAAAT
TTAAATAAGTTAAAATTCCCTTGGATAAATAAGTCTTAATTTGCTCGAAA
TCGAATATGTTCAAACCTCCCCAGCTTCAGACGTAGACCGGACACTTTTG
ACAGAGATCAATCTTTATCATGTCATGACTCTTAATTTGTTTTCCCTATT
AGACGTACCATGTAACATTTTAAATcccttttaaaaatagaaaaccaaat
aaaaaaatcaagtaacAAATACCATATCTACAGTATTATATCAATAATAT
AgaagaaacaagaaaaataacataaattttttaaaaacacatATGGTCTA
ACGTCTaagatttgtaataaaaaaNtaaattttttaaaaacacatATGGT
CTAAGGTCTaagatttgtaataaaaaaatcatattttcaatttgtataaa
aatagTGGTGCAAAATATGGACAGTACGAACTAGTCTGCGAGAATTATTT
TGTTACGTTTAGTTCGTATTAGAGTGATAATGTAATATATTATATATCAC
CCAAATGTTGGGAGTTTTCTTCTAAAAACCAGGATTATCCTTGTGTacca
aaaaatgtattttgaagTAAACTTATACGAAACTCTTGGAGCCAATTTCG
GATAAAAAATACATGATCATGAGCTGCAGGTAATAAGCAAGATATATATC
AATTAATACCAGACGATTATACCGGTAAGCTAACCTCAAACAGCAAAGAT
CATGTTAACCCAAGTAATATCTCGTAACTTTTGGTATCTTTAGAAGATCG
AATAAAAAAGCAGCCAGTCATTCCTTCTGTTCATACCCGGGCTCCTCCAA
ACAGCAAGCTTAATCAGGGCCTTCCAATGATGGTCAAGCAATTGATTGCA
GCCAACAACCCCAATGAAGCCccaataaaatctattttcttatATTCTTA
TACAAGGAATCCAACATATTTATCATCTTGCTCGTCAATATACTCATTGT
CACTTCTGTAAGGTTTGGAACTAGCGATAGATGAGGGCGTTGGTGAATCA
CGCCCGTTGACGCCCTGGTGAAAACCATTGGGTGGTGGAGGAGGTGGTTG
ATCGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021527-exon-sc0000389-1491911889:70769..71558 | TCONS_00021527-exon-sc0000389-1491911889:70769..71558 | Clytia hemisphaerica | exon |
| TCONS_00021527-exon-sc0000389-1510915933:70769..71558 | TCONS_00021527-exon-sc0000389-1510915933:70769..71558 | Clytia hemisphaerica | exon |
| TCONS_00021527-exon-sc0000389-1575043694:70769..71558 | TCONS_00021527-exon-sc0000389-1575043694:70769..71558 | Clytia hemisphaerica | exon |
| TCONS_00021527-exon-sc0000389-1491911889:71612..72326 | TCONS_00021527-exon-sc0000389-1491911889:71612..72326 | Clytia hemisphaerica | exon |
| TCONS_00021527-exon-sc0000389-1510915933:71612..72326 | TCONS_00021527-exon-sc0000389-1510915933:71612..72326 | Clytia hemisphaerica | exon |
| TCONS_00021527-exon-sc0000389-1575043694:71612..72326 | TCONS_00021527-exon-sc0000389-1575043694:71612..72326 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:70769..72326 + |
Blast
The following BLAST results are available for this feature:
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