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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021495 ID=TCONS_00021495|Name=TCONS_00021495|organism=Clytia hemisphaerica|type=transcript|length=2011bp
AGGATATGAAGTACCTTGTGtgtttaaatattaaaaattataCTACTGAC
ATGCAAAATTGATCAAAGAAccttcagtcattttcagtcatatGATTTCT
acacaaaatattttaattaataAATTCATCAGAGCTTGGTTCTTTGTGAA
TGAGATAAATCATGTATTTTTCATACCTTTATTTAGCTTATTGTGGgata
ttttcaaattaataATTAAATTTCCATCAATGAACTCTCAATATGTATGG
AAGtattttactaatttttttaCTATAAAACCTTTTGCACTTTTcctaaa
aatcttcaaaaaacgaTTTTACTACGGGAAGAACGTTTGCACtgaaaaaa
agtctttaaagaattttcctttattcaaaaatattttcgagaTGGGACGG
CAAACTCAAAGAGTTTCAAGTGCATTGAGAATGCGTTTCGGAGTCGTGGT
AACAGATGATGATCCACTCTGGGGTGGAGAGAAAGGCGTCGGTGATTACA
TCATTAAAAGATTCGAAGGAAGAAACTCCTCCCGAGATGAGTTTACAGCC
ATTCACGGCGTCAGTGGTCAATTACCGGACAAAAAGGATATTATTACATA
TGATGGTTTCATATTCACTGGATCACACCACTCCGTTAACGATGATTCAC
CCTGGATGCGACGTCTTGAAGTTTTCATCCGCAACGCGTATCAGACGTCA
CAGGAATTCGGCCGCCCTCGCATGGTTGGTATTTGCTTCGGTCATCAGTT
GATTGCCAAAGCCTTAGGAGGACACATCGGTGGCAATCCAGACAAGAAAT
TCAACTTCGGTAGCATTGATATTAATGTTGATGAAGGTTTTCTTAGCAAT
GATTTTGCAACTCAGGTTTCCTTTAAAAAGCGTAGAAAATCCTCTATTAC
GATGATGAAATTTCACGGTGAATGTGTTTTAGAGGCGCCCAAGATTGCAA
GACTTATCGGCTCATCAGAACAATGTAAGAATGAGATCCTAATGTATGGT
AACACAGTACTGACCACGCAAGGTCATCCAGAGTATACCAAAAATGTAAT
GGCGTTAACAAACTCTAAGATCATGTCACGCATCGGGCGTCTCGATGAAG
ATGAAATCAAACAGAATCTTGATCAGATTGTAAATGATGATGCGGAGAAT
TGTACTGACATGGTGAACGCATTTCTTCACCACATGCCGTTATCTATTAA
TGATCGAATGTCAAATCTAGCAATCACTGGTAAGAACCAGAAGAAGAATG
CGACATCCAAACGAGCAATGTTCAAACGTACGGAAACAATTGCTGCATGA
TTGATAacttaatttgaaaaatgacaatTATGAATTAATCTTAAAGTTGA
TATTTAATTGTATAGATAGCACAGATATCTCCACGCAGACAAACTTTCAA
TCGTCTTCGTTATCACGGGAGTTAAGGTCTAGCCGAAGAAGCGGTGATTC
GAACCAAAAAGTGACCCATTGGTCTTCAATATATCCACTAACTTTTTACC
CTGGAGCCGATAAATTTTCCACTCACTTTAGATTTTGTTCTCCcctgaat
gaaaaagttacacCGGTTACTAGGACATTTAATGTGTTTAACCTATTTAT
ATGACAGAAATATGTATGATGGATACAGAAGCCAGGGGTCGAAAAATATA
CAAACTTAGGATTTTgacttttcgttttttttttgcataagtACTTGTTT
TAGGTTTTAACTTCTTTCGAAAATATGTaggtcaaaactttttttactaG
TAGTAGTGCTGCGATATTTAAGGGGTGGTTTTATTTTAAGCAGCTTTACA
TGAGTTTGTTTAGTTATAGCTTAGCGCAtattgaaatttcttttctaAAT
TTAGCGAATTTTTGAGCTATTTTGTACTCTTTTTGCTACCTTTGTACATA
GCTAAACGCTAGCTTAAGAGACTTTTTATATAgctaaatttcttaaaatt
tatcTTCTAAGTTTTGTTTGAAAGGTTGTAAGTAGAACTGACAACtgtta
aaaaagggaaa Run BLAST on NCBI protein sequence of TCONS_00021495-protein >TCONS_00021495-protein ID=TCONS_00021495-protein|Name=TCONS_00021495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MISTQNILINKFIRAWFFVNEINHVFFIPLFSLLWDIFKLIIKFPSMNSQ
YVWKYFTNFFTIKPFALFLKIFKKRFYYGKNVCTEKKSLKNFPLFKNIFE
MGRQTQRVSSALRMRFGVVVTDDDPLWGGEKGVGDYIIKRFEGRNSSRDE
FTAIHGVSGQLPDKKDIITYDGFIFTGSHHSVNDDSPWMRRLEVFIRNAY
QTSQEFGRPRMVGICFGHQLIAKALGGHIGGNPDKKFNFGSIDINVDEGF
LSNDFATQVSFKKRRKSSITMMKFHGECVLEAPKIARLIGSSEQCKNEIL
MYGNTVLTTQGHPEYTKNVMALTNSKIMSRIGRLDEDEIKQNLDQIVNDD
AENCTDMVNAFLHHMPLSINDRMSNLAITGKNQKKNATSKRAMFKRTETI
AA Run BLAST on NCBI transcript from alignment at sc0000388:184447..187804+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021495 ID=TCONS_00021495|Name=TCONS_00021495|organism=Clytia hemisphaerica|type=transcript|length=3358bp|location=Sequence derived from alignment at sc0000388:184447..187804+ (Clytia hemisphaerica)
AGGATATGAAGTACCTTGTGtgtttaaatattaaaaattataCTACTGAC
ATGCAAAATTGATCAAAGAAccttcagtcattttcagtcatatGATTTCT
acacaaaatattttaattaataAATTCATCAGAGCTTGGTTCTTTGTGAA
TGAGATAAATCATGTATTTTTCATACCTTTATTTAGCTTATTGTGGgata
ttttcaaattaataATTAAATTTCCATCAATGAACTCTCAATATGTATGG
AAGtattttactaatttttttaCTATAAAACCTTTTGCACTTTTcctaaa
aatcttcaaaaaacgaTTTTACTACGGGAAGAACGTTTGCACtgaaaaaa
agtctttaaagaattttcctttattcaaaaatattttcgagaTGGGACGG
CAAACTCAAAGGTTAGTTTTACTTCAATTTTCCTTACATGAGAACCAATT
TTATCGGCCATAATTTTAACTCTCACTTTAATTTGAAGTGTTCAAAATAT
ACTGGTCTCGTTCGAATTATATGAatcactcccttctcacagatccggtc
AAATTATTTCAGCCAGTGGTGATAAAAATGACGGGATgatgatggggatt
gatattcccatattttttatgatatggatttcaatttttttcgttttcaa
gtcagaaaattcattggGGAGTGAAATATAGTAAATACTTTGCAtcgagg
attggtttatttgattattttctgttgggatataaattggagtataattt
tccaccagggactatattttggtaaatttttccgatgggaaggggtccca
atgggtctgtgagaaggaggtgttaTAAAATATCTTATATGCGGAACATT
TTGTAAGTAACTTTGCATCTATCTGCTCCTGAAGTACAATTATATGAATG
CATCACCGAAAGgtgagaatttcaaaaattacagggaaaaagctggtttt
aaGCCCCCTTTTGCTTTATTTAAAGAAATAGAGCATATTCAAAAACATCT
TagcctttattttctggttgtTAAGAGAAAATGTGCACGTATACAAAAAC
ATTCCATAAAAAGAATAATTTATAATAAAAAGTGTCCCAAGGAATAACTA
TAATGTCATATTATGTCAACGTTCATTCAAATATTACTATTGAAAAACCT
ATTGTCTTATCTCTAATCTGCTTAATCTCGAAATAGATCTTATATTATGT
TTTTATGAGTATTACATATATAAATTGAATAGAATAcacacccggggggg
ggtactagggttggcgaatgaggggtatgtgcggtcGGGACCttcgaaaa
ccgacccttagagagacttttttaattttttttttcgatctttgaaaaaa
gtcatacccttagagagattttatcacaatttttttttcgatttttgaaa
aaactatacccttagagagactttattacaattttttctctggaaatcaa
aaaattccctaaaaatcctgaagtttcggacccttagagagactaattta
aaacttttagatttttccgacccttagagagactttgaaaggtgaaaaaa
ccgacccttacggtccgcacatacccatcatccatttttgcttagtaccc
ccccccccgaaatACACAGAAGTTTCACTTTCTGTCACTCTACCTTTGCC
ACGCCAATAATATATACTGCAAACTTTCGCGAGAAAGGTCTGAGTAGTAT
TTGGAGGGAATAAGATAAAGCACATCATCATGAGACTTTCAACATGTTTA
CTTTACAGAGTTTCAAGTGCATTGAGAATGCGTTTCGGAGTCGTGGTAAC
AGATGATGATCCACTCTGGGGTGGAGAGAAAGGCGTCGGTGATTACATCA
TTAAAAGATTCGAAGGAAGAAACTCCTCCCGAGATGAGTTTACAGCCATT
CACGGCGTCAGTGGTCAATTACCGGACAAAAAGGATATTATTACATATGA
TGGTTTCATATTCACTGGATCACACCACTCCGTTAACGATGATTCACCCT
GGATGCGACGTCTTGAAGTTTTCATCCGCAACGCGTATCAGACGTCACAG
GAATTCGGCCGCCCTCGCATGGTTGGTATTTGCTTCGGTCATCAGTTGAT
TGCCAAAGCCTTAGGAGGACACATCGGTGGCAATCCAGACAAGAAATTCA
ACTTCGGTAGCATTGATATTAATGTTGATGAAGGTTTTCTTAGCAATGAT
TTTGCAACTCAGGTTTCCTTTAAAAAGCGTAGAAAATCCTCTATTACGAT
GATGAAATTTCACGGTGAATGTGTTTTAGAGGCGCCCAAGATTGCAAGAC
TTATCGGCTCATCAGAACAATGTAAGAATGAGATCCTAATGTATGGTAAC
ACAGTACTGACCACGCAAGGTCATCCAGAGTATACCAAAAATGTAATGGC
GTTAACAAACTCTAAGATCATGTCACGCATCGGGCGTCTCGATGAAGATG
AAATCAAACAGAATCTTGATCAGATTGTAAATGATGATGCGGAGAATTGT
ACTGACATGGTGAACGCATTTCTTCACCACATGCCGTTATCTATTAATGA
TCGAATGTCAAATCTAGCAATCACTGGTAAGAACCAGAAGAAGAATGCGA
CATCCAAACGAGCAATGTTCAAACGTACGGAAACAATTGCTGCATGATTG
ATAacttaatttgaaaaatgacaatTATGAATTAATCTTAAAGTTGATAT
TTAATTGTATAGATAGCACAGATATCTCCACGCAGACAAACTTTCAATCG
TCTTCGTTATCACGGGAGTTAAGGTCTAGCCGAAGAAGCGGTGATTCGAA
CCAAAAAGTGACCCATTGGTCTTCAATATATCCACTAACTTTTTACCCTG
GAGCCGATAAATTTTCCACTCACTTTAGATTTTGTTCTCCcctgaatgaa
aaagttacacCGGTTACTAGGACATTTAATGTGTTTAACCTATTTATATG
ACAGAAATATGTATGATGGATACAGAAGCCAGGGGTCGAAAAATATACAA
ACTTAGGATTTTgacttttcgttttttttttgcataagtACTTGTTTTAG
GTTTTAACTTCTTTCGAAAATATGTaggtcaaaactttttttactaGTAG
TAGTGCTGCGATATTTAAGGGGTGGTTTTATTTTAAGCAGCTTTACATGA
GTTTGTTTAGTTATAGCTTAGCGCAtattgaaatttcttttctaAATTTA
GCGAATTTTTGAGCTATTTTGTACTCTTTTTGCTACCTTTGTACATAGCT
AAACGCTAGCTTAAGAGACTTTTTATATAgctaaatttcttaaaatttat
cTTCTAAGTTTTGTTTGAAAGGTTGTAAGTAGAACTGACAACtgttaaaa
aagggaaa Coding sequence (CDS) from alignment at sc0000388:184447..187804+ >TCONS_00021495 ID=TCONS_00021495|Name=TCONS_00021495|organism=Clytia hemisphaerica|type=CDS|length=2418bp|location=Sequence derived from alignment at sc0000388:184447..187804+ (Clytia hemisphaerica)
atGATTTCTacacaaaatattttaattaataAATTCATCAGAGCTTGGTT
CTTTGTGAATGAGATAAATCATGTATTTTTCATACCTTTATTTAGCTTAT
TGTGGgatattttcaaattaataATTAAATTTCCATCAATGAACTCTCAA
TATGTATGGAAGtattttactaatttttttaCTATAAAACCTTTTGCACT
TTTcctaaaaatcttcaaaaaacgaTTTTACTACGGGAAGAACGTTTGCA
Ctgaaaaaaagtctttaaagaattttcctttattcaaaaatattttcgag
aTGGGACGGCAAACTCAAAGAGTTTCAAGTGCATTGAGAATGCGTTTCGG
AGTCGTGGTAACAGATGATGATCCACTCTGGGGTGGAGAGAAAGGCGTCG
GTGATTACATCATTAAAAGATTCGAAGGAAGAAACTCCTCCCGAGATGAG
TTTACAGCCATTCACGGCGTCAGTGGTCAATTACCGGACAAAAAGGATAT
TATTACATATGATGGTTTCATATTCACTGGATCACACCACTCCGTTAACG
ATGATTCACCCTGGATGCGACGTCTTGAAGTTTTCATCCGCAACGCGTAT
CAGACGTCACAGGAATTCGGCCGCCCTCGCATGGTTGGTATTTGCTTCGG
TCATCAGTTGATTGCCAAAGCCTTAGGAGGACACATCGGTGGCAATCCAG
ACAAGAAATTCAACTTCGGTAGCATTGATATTAATGTTGATGAAGGTTTT
CTTAGCAATGATTTTGCAACTCAGGTTTCCTTTAAAAAGCGTAGAAAATC
CTCTATTACGATGATGAAATTTCACGGTGAATGTGTTTTAGAGGCGCCCA
AGATTGCAAGACTTATCGGCTCATCAGAACAATGTAAGAATGAGATCCTA
ATGTATGGTAACACAGTACTGACCACGCAAGGTCATCCAGAGTATACCAA
AAATGTAATGGCGTTAACAAACTCTAAGATCATGTCACGCATCGGGCGTC
TCGATGAAGATGAAATCAAACAGAATCTTGATCAGATTGTAAATGATGAT
GCGGAGAATTGTACTGACATGGTGAACGCATTTCTTCACCACATGCCGTT
ATCTATTAATGATCGAATGTCAAATCTAGCAATCACTGGTAAGAACCAGA
AGAAGAATGCGACATCCAAACGAGCAATGTTCAAACGTACGGAAACAATT
GCTGCATGAatGATTTCTacacaaaatattttaattaataAATTCATCAG
AGCTTGGTTCTTTGTGAATGAGATAAATCATGTATTTTTCATACCTTTAT
TTAGCTTATTGTGGgatattttcaaattaataATTAAATTTCCATCAATG
AACTCTCAATATGTATGGAAGtattttactaatttttttaCTATAAAACC
TTTTGCACTTTTcctaaaaatcttcaaaaaacgaTTTTACTACGGGAAGA
ACGTTTGCACtgaaaaaaagtctttaaagaattttcctttattcaaaaat
attttcgagaTGGGACGGCAAACTCAAAGAGTTTCAAGTGCATTGAGAAT
GCGTTTCGGAGTCGTGGTAACAGATGATGATCCACTCTGGGGTGGAGAGA
AAGGCGTCGGTGATTACATCATTAAAAGATTCGAAGGAAGAAACTCCTCC
CGAGATGAGTTTACAGCCATTCACGGCGTCAGTGGTCAATTACCGGACAA
AAAGGATATTATTACATATGATGGTTTCATATTCACTGGATCACACCACT
CCGTTAACGATGATTCACCCTGGATGCGACGTCTTGAAGTTTTCATCCGC
AACGCGTATCAGACGTCACAGGAATTCGGCCGCCCTCGCATGGTTGGTAT
TTGCTTCGGTCATCAGTTGATTGCCAAAGCCTTAGGAGGACACATCGGTG
GCAATCCAGACAAGAAATTCAACTTCGGTAGCATTGATATTAATGTTGAT
GAAGGTTTTCTTAGCAATGATTTTGCAACTCAGGTTTCCTTTAAAAAGCG
TAGAAAATCCTCTATTACGATGATGAAATTTCACGGTGAATGTGTTTTAG
AGGCGCCCAAGATTGCAAGACTTATCGGCTCATCAGAACAATGTAAGAAT
GAGATCCTAATGTATGGTAACACAGTACTGACCACGCAAGGTCATCCAGA
GTATACCAAAAATGTAATGGCGTTAACAAACTCTAAGATCATGTCACGCA
TCGGGCGTCTCGATGAAGATGAAATCAAACAGAATCTTGATCAGATTGTA
AATGATGATGCGGAGAATTGTACTGACATGGTGAACGCATTTCTTCACCA
CATGCCGTTATCTATTAATGATCGAATGTCAAATCTAGCAATCACTGGTA
AGAACCAGAAGAAGAATGCGACATCCAAACGAGCAATGTTCAAACGTACG
GAAACAATTGCTGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021495-exon-sc0000388-1491911889:184447..184857 | TCONS_00021495-exon-sc0000388-1491911889:184447..184857 | Clytia hemisphaerica | exon |
| TCONS_00021495-exon-sc0000388-1510915933:184447..184857 | TCONS_00021495-exon-sc0000388-1510915933:184447..184857 | Clytia hemisphaerica | exon |
| TCONS_00021495-exon-sc0000388-1575043694:184447..184857 | TCONS_00021495-exon-sc0000388-1575043694:184447..184857 | Clytia hemisphaerica | exon |
| TCONS_00021495-exon-sc0000388-1491911889:186205..187804 | TCONS_00021495-exon-sc0000388-1491911889:186205..187804 | Clytia hemisphaerica | exon |
| TCONS_00021495-exon-sc0000388-1510915933:186205..187804 | TCONS_00021495-exon-sc0000388-1510915933:186205..187804 | Clytia hemisphaerica | exon |
| TCONS_00021495-exon-sc0000388-1575043694:186205..187804 | TCONS_00021495-exon-sc0000388-1575043694:186205..187804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:184447..187804 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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