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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021486 ID=TCONS_00021486|Name=TCONS_00021486|organism=Clytia hemisphaerica|type=transcript|length=1098bp
AGATCGTCGCGATAGTAGTTTTTCGAGTGtggaaagtgaaaaaaaagGGC
AAGCAACAGCCTCTACTCACGAATTTGTTGAGAACGAGATTATTGGTACT
GATTTTCTTATGGAAACATTCAACAACAGCCAATCAGGTGAAAGTGAAAG
TCACGCAAAAATAAAATCTCCTTCAACAAATTTGAACAACCCACCATCAA
AAACTTCTTCCACTAACTTACAACCTAGTTCGGTAAAAGGGCTACCTCCA
TTGGGTAGTTGTTCGCTTGTTACAAGGACCAATATCGGTCAATCTCAGCA
GAAAAGACATTCGCTGCCCTCAACTGAAATAGTTGAATCATTAGAAGGGC
ACTCATCCGCAGGGTCGAAAAGGCGGCATTCTTTACAAGAGCCCGCTTGC
CCTCATGAGACCAGAACGGAGGATTGTCGACGAGGTAAACGACCACCCTC
TAGAGGAGGGCGGATCATAAAAGACTGGCTTCAGAGAAAAACAAGTTTAT
AGGcttcattgaaattgttattGAATATACAATCATGAGAAAACTAAAGA
AATCCAATGTTTTTTTCTACAAATCCCCCTTTAACCCTTAACAAATGAGC
ATAATCTTTTTCCAAGGagtgtttttgtgtttttatcatatttctataat
ttttaatggagttttgatattttgctgTTTTCgtgttttcatataatttt
tatgaaacgtcaaaaatgatcagaaagcagaATTAAGTAAGATAAGAAGT
AGACTCTAGCCCCGGAGGAGGCACTCTGGTGAAATTGGGAAAGGGACGTG
CCACTGATCAGGGTTCCATTTTAAGGCTCCGAAGACATCTGACAGTCCCA
AACTTactaattttcaacatttgtacCTGAAACATCTTctggttattttg
gacaattttaagggtttaaatttttcaatcttttgtctacatttcgttat
ttttgccacttttcaggtgaaaatgggaattttttttcgattttccttcc
gacagggtcccaaatataccaaattcatatctgaccgggtccacttttca
aactccagtggcACGTCTCCGTTGGctgtcagtgccccccccccccgg Run BLAST on NCBI transcript from alignment at sc0000388:21506..22888+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021486 ID=TCONS_00021486|Name=TCONS_00021486|organism=Clytia hemisphaerica|type=transcript|length=1383bp|location=Sequence derived from alignment at sc0000388:21506..22888+ (Clytia hemisphaerica)
AGATCGTCGCGATAGTAGTTTTTCGAGTGtggaaagtgaaaaaaaaggta
tctttaaaaaagcttttttgaatgttttgtagTGTAGATTTACTGATAAA
CATAATGTAGATACTTGTCCTAAATCACTCCTGCTTCACAGATGCATATT
CAAATACTCTGTGcgcatattttttttgaatttacaaAACTGTTTATTCT
TAACCCTTACACCGTTTTAATgctttgatttttctgaaattcaaaattca
attcaacGGTCTTTGATTCAAGagaattttttgcatttatACGTTATCAC
ATTTTCATTATTGCTCCATTATTCCACTTCAGGGCAAGCAACAGCCTCTA
CTCACGAATTTGTTGAGAACGAGATTATTGGTACTGATTTTCTTATGGAA
ACATTCAACAACAGCCAATCAGGTGAAAGTGAAAGTCACGCAAAAATAAA
ATCTCCTTCAACAAATTTGAACAACCCACCATCAAAAACTTCTTCCACTA
ACTTACAACCTAGTTCGGTAAAAGGGCTACCTCCATTGGGTAGTTGTTCG
CTTGTTACAAGGACCAATATCGGTCAATCTCAGCAGAAAAGACATTCGCT
GCCCTCAACTGAAATAGTTGAATCATTAGAAGGGCACTCATCCGCAGGGT
CGAAAAGGCGGCATTCTTTACAAGAGCCCGCTTGCCCTCATGAGACCAGA
ACGGAGGATTGTCGACGAGGTAAACGACCACCCTCTAGAGGAGGGCGGAT
CATAAAAGACTGGCTTCAGAGAAAAACAAGTTTATAGGcttcattgaaat
tgttattGAATATACAATCATGAGAAAACTAAAGAAATCCAATGTTTTTT
TCTACAAATCCCCCTTTAACCCTTAACAAATGAGCATAATCTTTTTCCAA
GGagtgtttttgtgtttttatcatatttctataatttttaatggagtttt
gatattttgctgTTTTCgtgttttcatataatttttatgaaacgtcaaaa
atgatcagaaagcagaATTAAGTAAGATAAGAAGTAGACTCTAGCCCCGG
AGGAGGCACTCTGGTGAAATTGGGAAAGGGACGTGCCACTGATCAGGGTT
CCATTTTAAGGCTCCGAAGACATCTGACAGTCCCAAACTTactaattttc
aacatttgtacCTGAAACATCTTctggttattttggacaattttaagggt
ttaaatttttcaatcttttgtctacatttcgttatttttgccacttttca
ggtgaaaatgggaattttttttcgattttccttccgacagggtcccaaat
ataccaaattcatatctgaccgggtccacttttcaaactccagtggcACG
TCTCCGTTGGctgtcagtgccccccccccccgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021486-exon-sc0000388-1491911889:21506..21552 | TCONS_00021486-exon-sc0000388-1491911889:21506..21552 | Clytia hemisphaerica | exon |
| TCONS_00021486-exon-sc0000388-1510915933:21506..21552 | TCONS_00021486-exon-sc0000388-1510915933:21506..21552 | Clytia hemisphaerica | exon |
| TCONS_00021486-exon-sc0000388-1575043694:21506..21552 | TCONS_00021486-exon-sc0000388-1575043694:21506..21552 | Clytia hemisphaerica | exon |
| TCONS_00021486-exon-sc0000388-1491911889:21838..22888 | TCONS_00021486-exon-sc0000388-1491911889:21838..22888 | Clytia hemisphaerica | exon |
| TCONS_00021486-exon-sc0000388-1510915933:21838..22888 | TCONS_00021486-exon-sc0000388-1510915933:21838..22888 | Clytia hemisphaerica | exon |
| TCONS_00021486-exon-sc0000388-1575043694:21838..22888 | TCONS_00021486-exon-sc0000388-1575043694:21838..22888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:21506..22888 + |
Blast
The following BLAST results are available for this feature:
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