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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021483 ID=TCONS_00021483|Name=TCONS_00021483|organism=Clytia hemisphaerica|type=transcript|length=1899bp
GGCTTGATACAGACAGATTATGGTTGTTTTTAGTGAATATTTTTCTTGGG
TGATTGAGAAAcatgttgttttgtttatttatcaCAATTACGAGAGAATC
CAAAGCATGGTGAAAGTTTTGAAGTTGCTTGAAGGACACACTGAACCACA
AGAGATTCGCACGCTCAACAAAGGTGATTATTTCGGTGAAAAGGCTCTAC
TGAGTGAAGACCTAAGAACAGCAAGTATCATCGCACTAGCGGGAGGCGTC
AACTGTTTAGTTATCGAACGCGAGAACTTTTTAAGCTTTATCGGTGATCT
TGATAGCATCAAAGAAAAAGATTACGGTGATTTGGAACGGAAGGCGGCCG
CCCAACTCAGCAAGAAAACATCATCTGAGTCGACGGTAAGCCAGAAAAGC
ACATCATCGCAACCACCCAAAGAAAAACATAGAACGTCAACAGAAATAAT
ACGCGCAGAATTCGAAACTAAACGCCTTAGTGCATTCAAGTTACTCTCCA
CCCTCGGTATGGGCGGATTCGGGCGTGTTGAACTGATCCAggataaagaa
aacaaaagcaaaacgTACGCCCTTAAATGTTTGATAAAACAACACGTGgt
agaaacaaaacaacaagaacacgtcttcaacgagaaaaaaatcttaatGT
CACTCGACTCACCTTTCATTATAAACCTTTACAAAACATTCAAAGATAAA
CGTTTCGTGTATTTCCTCATGGAGGTATGCCTAGGAGGTGAATTATGGAC
CATTTTGCGAGATAAAGACTATTTCGACGAACCTACCAGTCGTTTCTATA
CAGCCTGTGTTGTTGAAGCTTTCGAATATTTACACGCTCGTGGTATCGTA
TTTAGAGATTTAAAGCCAGAAAATCTATTACTTGATAATAGAGGTTACGT
CAAACTGGTTGATTTCGGTTTCGCTAAGAAGATCAAGTCGGGTACAAAGA
CATGGACATTTTGTGGAACACCCGAATATGTTGCTCCGGAGATTATCTTA
AACAAAGGACATGATTGTTCGGCAGATTATTGGTCATTAGGTGTACTGAT
ATACGAATTGATGACTGGCAATCCACCCTTCACAAGCTCAGATCCAATGA
ACACTTATAACATTATTTTAAGAGGTATCGATGCTTTAGAATTCTCTTCG
CTTATATCAAGGAACGCTCAACTGCTTATTAAAAGACTTTGTAAAGAAAA
TCCAATGGAGCGCCTTGGTAACCAAAAAGATGGTGTAATGGATATACGAA
AACATAAATGGTTTACAGGCTTTCATTGGAGTGGATTACAGGCTAGGACA
TTGCAAGCGCCGATTATGCCGAAAATCAAAGACGCATCTGATCATTcgaa
ttttgattatttctcACCTAATAAAGATATACCACCTGAAGAAAATTCGG
GTTGGGATTCCGAGTTTTAGTTTCTTTTTTCGGGTTAATTCGGAGTTAGT
TTGAGTTCAAGAACgtgttaaagtaaaattttctgcTTTCGATTTTGTAT
CAATTCGTATCCTGTTTACTTTACTGAGAAGAGGTTTTAAGTCAGGAATT
TAACTTTAATCCGTTCTATGAACTCTGAGAAACAATTTAATTTATCGGTT
TTTTACTGTTGCTAGTTTGATTTCGAATGGTAGATTTTCATAGCGAGCtg
cttttatcaaaatttaaagaGTATGTGATCGGAATAATTTTTATCAGGCT
TGAATGGTGATATAGAATTTTCGTTTTCTGGAAGGTTCGATATACATTCC
GAGTAACACGGGTAAATTCATTCGCGttttaagtttattttcaatTGTTG
GGTTTCAATCtatttgtataatttttttttaaacgaaATTCATAGGATTT
ATAATTGTTATCATTCGGTGCTTTTAGAATCAAATTTGAACGATtttat Run BLAST on NCBI transcript from alignment at sc0000388:10245..14836+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021483 ID=TCONS_00021483|Name=TCONS_00021483|organism=Clytia hemisphaerica|type=transcript|length=4592bp|location=Sequence derived from alignment at sc0000388:10245..14836+ (Clytia hemisphaerica)
GGCTTGATACAGACAGATTATGGTTGTTTTTAGTGAATATTTTTCTTGGG
TGATTGAGAAAcatgttgttttgtttatttatcaCAATTACGAGAGAATC
CAAAGTAAGGAATCCTTTCATTTAGTTTGTTTGATGTtgttttgacgttc
gattgacgTCCATAGGTTATGGTCATTCTGTTATGCAATCACTGTAAGTC
CGCATTACTGCACTTGGGTTTACCAGAGGTAGATCACAGTTAACTTATTT
GTTGGTTATAATCGTTGCATTAGAATTATCACATTTCTCATTTAAGTGTA
ACCTTATTCGTGAGTTATTTTTATGGAGAACGGGATGAAACATTGAGTAC
TTTCAGTTGCCCAATAATTGTCAACGCAAGCTTGTCCCGTTTATTTATCT
TTGATTTCGGTTTATAGTATTTTGGGATATTCGGAAGTGCAATATCTGTT
CCATCCCCTTGTTGACAAAAATTTGAACGTTTCAACTACGAAGTCTCCCT
TTTCAGCCGAGCAAGCTCAATGCTAATACTTTTTACTCTTTGAAATAGCC
GTTGCTTAGGAAGCAAAATCATAACGTGTCAAGTAGAGTGGAGCTTGCTT
GGCTACTCTTTTCTCGGCCCCTTTTAATTCAGATCTTAGAAGTACTCTTC
GCTGTTTGTTGTTGTGACATGTGCCGCTATAAGTATTCTAAAAGTAGCGA
CTAGAAGCTGGTAGAGTTATTTCTAAAAGGTTAGATAAGGTGTCACaact
ttttgcagaaaaaataaattttgagttcGTTTAAAGTCCGTCGATTTCAT
AATACTGATATTATAATTGAAACGTATTATAAAAAAGcgttaatttgttt
tgatttttgtacaGGGATCATCCCTAAAAGCGTTAAAAGATCTGTAAACA
TTTTTTGATAGTGATTTGTACGCATCTCTAGAACTCTCAAAATTCCGTTC
TATGTTCAACAGCGGAAGGAAACGACGTTAAAGGAAGTTGAAAGCTTCCT
GTAAACTCGTTAAAAATAGTAAAGCGCTCATTTTGTTAAATCAAAAGCAT
ACTTCAGCTGAAAGTCTCACAAGAAAATGGTTCATAGGCTTtaaatttga
agtttttataacaacttttaaatttgttaacaaaattttcatttcataat
gGCCTTAAGACCATTAAACACAGTGTAATCTAAAAATTTCAAGACCAAAA
TGGAATAAGCTCGTTCAAACTTTCAATAAGTCTCCATTTCAATTACGAAA
CTTTCGTTAAAGCGTGAGGATTGTGTCTTTTCTTTACGTAATTACGGCAT
AAGTTTTTGAAACAACAACCTTTGAAGTCTTAGTGGTTAcgaaaaacgta
aagaaataGAATTTTAAGCACGCTAACACGACACGATGTTTTacgcaaca
aaattttcaaatttaaaaagaatttaaaaagtgTGTCTTTATATAAGCTA
ACACGTGAAAGCATAACTGGTATtatgaaaatcactgattttaaCCGTAC
AGAAATTTTTGGCCTTGAAAGAGTGTAGCTAATATAGAACGAACAACAAT
CTCATTTAACGTTGTGACTGATTACGTAGAGATTCAATCAAATGCTGTAA
ATAAGCCAACCAAACCAAACAGTAGCGAGCAcatcaccaaaaaccgggat
ttttcattttgtatctTGGTGAATTttactttgatgattttcgagAAAtg
gaagcctttcaagtgtattgacgcaaattcgattttattGCTTCTGTtaa
ggccggtttccacttgcgcgcgctgtgatcgcactttttgacttcaatcc
ttttttcttggaaaaaaagattacgtcataaaaatgtagcgcgctggaaa
aaaagttgaacacatttcaacttttttcaaccgctacgtcagatcgcgcc
aatggagttgcttcatttttcttttggccaatagcgtggaagctttgctc
gaaaataTGTGATTGAAGCgcacgcaagtggagaccggcctttagtcTGA
ATCACACCTCTACAAAATCGCAGGTAGTATaaagcacgaatccgttagtg
gaagGCAGCAGCCTATGCTTCTGTAGGagctttgaaggtttaaagtgaCG
TCTCGAATGGTTGGAACCCGAAAACCTAAActtcaaacattcaaaaaagt
CGCAAAATGGAATAAGTTCTTTTTCACTNACGtctcgaatgtttggagcc
cgaaaatCTAAACTTGAAACATTCAAAAAAGTCGCAAAATAGAATAAGTA
GATATTACTGCGTAGAAAAAagccgtgacgtctagtatatgCTTTGCAAA
CAGTTTTTCTTGGTTTTTGGAAAGCTTAGGACCGTTATTTCCTACCCTCC
TGAGGTGGACGTCATTAAAAGTACGTGAGATATCAGAACAGTGAAAAAGA
AACACTAAATCAAAATGATTATGTACTCAAAAAGACTTAACACATTGACT
AAACGCCTCTTAGGAGGTATAATCTTGTATAAAACTTAAAACATTATTCA
TTTTCGTCACAAATAAAGAATGACCTTATTGTCTTTTTGCGTAATGAGAA
TCATATAAGCCAATGACGCAACGTCTTATATTCGTGTTGTCATTACACCC
ATATAACGGGACCTAAATTTAAAGAAAGGACAATACCTTTAAAAACTACT
CATGAGATTACATCGGATTTTATGACGCACGCTCCGCTAGTTTATATCCA
GAGGTCTTGTAATATTTTAGTTCAGTCCTTATAATTAATTCAACGAGTGA
AGTAagattttgaaattgattttttcatattctttCCTTTTGATCAGGCA
TGGTGAAAGTTTTGAAGTTGCTTGAAGGACACACTGAACCACAAGAGATT
CGCACGCTCAACAAAGGTGATTATTTCGGTGAAAAGGCTCTACTGAGTGA
AGACCTAAGAACAGCAAGTATCATCGCACTAGCGGGAGGCGTCAACTGTT
TAGTTATCGAACGCGAGAACTTTTTAAGCTTTATCGGTGATCTTGATAGC
ATCAAAGAAAAAGATTACGGTGATTTGGAACGGAAGGCGGCCGCCCAACT
CAGCAAGAAAACATCATCTGAGTCGACGGTAAGCCAGAAAAGCACATCAT
CGCAACCACCCAAAGAAAAACATAGAACGTCAACAGAAATAATACGCGCA
GAATTCGAAACTAAACGCCTTAGTGCATTCAAGTTACTCTCCACCCTCGG
TATGGGCGGATTCGGGCGTGTTGAACTGATCCAggataaagaaaacaaaa
gcaaaacgTACGCCCTTAAATGTTTGATAAAACAACACGTGgtagaaaca
aaacaacaagaacacgtcttcaacgagaaaaaaatcttaatGTCACTCGA
CTCACCTTTCATTATAAACCTTTACAAAACATTCAAAGATAAACGTTTCG
TGTATTTCCTCATGGAGGTATGCCTAGGAGGTGAATTATGGACCATTTTG
CGAGATAAAGACTATTTCGACGAACCTACCAGTCGTTTCTATACAGCCTG
TGTTGTTGAAGCTTTCGAATATTTACACGCTCGTGGTATCGTATTTAGAG
ATTTAAAGCCAGAAAATCTATTACTTGATAATAGAGGTTACGTCAAACTG
GTTGATTTCGGTTTCGCTAAGAAGATCAAGTCGGGTACAAAGACATGGAC
ATTTTGTGGAACACCCGAATATGTTGCTCCGGAGATTATCTTAAACAAAG
GACATGATTGTTCGGCAGATTATTGGTCATTAGGTGTACTGATATACGAA
TTGATGACTGGCAATCCACCCTTCACAAGCTCAGATCCAATGAACACTTA
TAACATTATTTTAAGAGGTATCGATGCTTTAGAATTCTCTTCGCTTATAT
CAAGGAACGCTCAACTGCTTATTAAAAGACTTTGTAAAGAAAATCCAATG
GAGCGCCTTGGTAACCAAAAAGATGGTGTAATGGATATACGAAAACATAA
ATGGTTTACAGGCTTTCATTGGAGTGGATTACAGGCTAGGACATTGCAAG
CGCCGATTATGCCGAAAATCAAAGACGCATCTGATCATTcgaattttgat
tatttctcACCTAATAAAGATATACCACCTGAAGAAAATTCGGGTTGGGA
TTCCGAGTTTTAGTTTCTTTTTTCGGGTTAATTCGGAGTTAGTTTGAGTT
CAAGAACgtgttaaagtaaaattttctgcTTTCGATTTTGTATCAATTCG
TATCCTGTTTACTTTACTGAGAAGAGGTTTTAAGTCAGGAATTTAACTTT
AATCCGTTCTATGAACTCTGAGAAACAATTTAATTTATCGGTTTTTTACT
GTTGCTAGTTTGATTTCGAATGGTAGATTTTCATAGCGAGCtgcttttat
caaaatttaaagaGTATGTGATCGGAATAATTTTTATCAGGCTTGAATGG
TGATATAGAATTTTCGTTTTCTGGAAGGTTCGATATACATTCCGAGTAAC
ACGGGTAAATTCATTCGCGttttaagtttattttcaatTGTTGGGTTTCA
ATCtatttgtataatttttttttaaacgaaATTCATAGGATTTATAATTG
TTATCATTCGGTGCTTTTAGAATCAAATTTGAACGATtttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021483-exon-sc0000388-1491911889:10245..10348 | TCONS_00021483-exon-sc0000388-1491911889:10245..10348 | Clytia hemisphaerica | exon |
| TCONS_00021483-exon-sc0000388-1510915933:10245..10348 | TCONS_00021483-exon-sc0000388-1510915933:10245..10348 | Clytia hemisphaerica | exon |
| TCONS_00021483-exon-sc0000388-1575043694:10245..10348 | TCONS_00021483-exon-sc0000388-1575043694:10245..10348 | Clytia hemisphaerica | exon |
| TCONS_00021483-exon-sc0000388-1491911889:13042..14836 | TCONS_00021483-exon-sc0000388-1491911889:13042..14836 | Clytia hemisphaerica | exon |
| TCONS_00021483-exon-sc0000388-1510915933:13042..14836 | TCONS_00021483-exon-sc0000388-1510915933:13042..14836 | Clytia hemisphaerica | exon |
| TCONS_00021483-exon-sc0000388-1575043694:13042..14836 | TCONS_00021483-exon-sc0000388-1575043694:13042..14836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:10245..14836 + |
Blast
BLAST of TCONS_00021483 vs. Swiss-Prot (Human)
Match: KGP1 (cGMP-dependent protein kinase 1 OS=Homo sapiens GN=PRKG1 PE=1 SV=3) HSP 1 Score: 502.286 bits (1292), Expect = 4.845e-169 Identity = 244/423 (57.68%), Postives = 307/423 (72.58%), Query Frame = 2
Query: 143 EPQEIRTLNKGDYFGEKALLSEDLRTASIIALAGGVNCLVIERENFLSFIGDLDSIKEKDYGDLERKAAAQLXXXXXXXXXXXXXXXXXXXXXXXHRTSTEIIRAEFETKRLSAFKLLSTLGMGGFGRVELIQDKENKSKTYALKCLIKQHVVETKQQEHVFNEKKILMSLDSPFIINLYKTFKDKRFVYFLMEVCLGGELWTILRDKDYFDEPTSRFYTACVVEAFEYLHARGIVFRDLKPENLLLDNRGYVKLVDFGFAKKIKSGTKTWTFCGTPEYVAPEIILNKGHDCSADYWSLGVLIYELMTGNPPFTSSDPMNTYNIILRGIDALEFSSLISRNAQLLIKRLCKENPMERLGNQKDGVMDIRKHKWFTGFHWSGLQARTLQAPIMPKIKDASDHSNFDYFSPNKD-IPPEENSGWD 1408
+P +RTL KGD+FGEKAL ED+RTA++IA A V CLVI+R++F IG LD + K Y D E KA + F +LS F ++ TLG+GGFGRVEL+Q K +SKT+A+K L K+H+V+T+QQEH+ +EK+I+ S FI+ LY+TFKD +++Y LME CLGGELWTILRD+ F++ T+RFYTACVVEAF YLH++GI++RDLKPENL+LD+RGY KLVDFGFAKKI G KTWTFCGTPEYVAPEIILNKGHD SADYWSLG+L+YEL+TG+PPF+ DPM TYNIILRGID +EF I++NA LIK+LC++NP ERLGN K+GV DI+KHKWF GF+W GL+ TL PI+P + +D SNFD F + D PP++NSGWD
Sbjct: 277 DPVFLRTLGKGDWFGEKALQGEDVRTANVIA-AEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEAAF------------------------------FANLKLSDFNIIDTLGVGGFGRVELVQLKSEESKTFAMKILKKRHIVDTRQQEHIRSEKQIMQGAHSDFIVRLYRTFKDSKYLYMLMEACLGGELWTILRDRGSFEDSTTRFYTACVVEAFAYLHSKGIIYRDLKPENLILDHRGYAKLVDFGFAKKIGFGKKTWTFCGTPEYVAPEIILNKGHDISADYWSLGILMYELLTGSPPFSGPDPMKTYNIILRGIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDIQKHKWFEGFNWEGLRKGTLTPPIIPSVASPTDTSNFDSFPEDNDEPPPDDNSGWD 668
The following BLAST results are available for this feature:
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