|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021476 ID=TCONS_00021476|Name=TCONS_00021476|organism=Clytia hemisphaerica|type=transcript|length=1585bp
AAGGAGGAGGTGTATGTATCGGCACACATTGTCATGGCGTTGGGTATATT
TGGTTGGTGCAAGGACTGGGCATCCTGAGATGATATGGTTGATGGTTTCG
GGTTTGGTCTTACAGGCTCTACAGGTGTCGTCATTGGTGGTTTTGAAGAT
ATGTTTTTGTGTGTATTTGGTGGTTATTGCATTTTCCTGGATTGCGCAGA
TGGTTGATTCGGTAGTTCTTTTCAATGTGGAGGATCTTAGCCATGACAAT
GAAGCGTCTTTGTCGATGCGGGGTTGGTCTAGCGTGATGAAGAATTGGCC
GTGCATGGGTTTTTCTTTGAGGATTTCGAGTTTTTGTTTGGAGCGTTTGG
TTTTGACTTGCAATTTCAATTGTGGTTTTGTAAGTTCGTTTGCTTGGTTT
TCGTCAATGTTGAGTTCTGCTAGGTACTTCTCAGCTTTTTGGTGGAGGGA
TTTTGCTCCTCTGTCGGTTTGTGACGTTGATACTAATATCATGAGATGTT
CGGTGGAGTTTTTAAGGTATTTACTGTATTGAATGATTTggtttttgtag
aggtctgtgatgtTGAGTAAACCTCTTCCTCCATTTCTACGTGGNCAAAT
TGCATGTGGATGTCGTTGCTGAACATTGACACGATTTCGAGGAGGTCTTG
GAGATGTTCGTCATTGTTGGCGTACAATTTCAGGTCATCCATGAAAAGCA
GGTGGCTGATAGTTGTGCGATTGTTTCTCGGGCCAATTGAGTAGCCGATG
GATGTTCTTTTGATAAGCCAAGAGAGCGGTAGAAGGCTTATGACGAAATT
CAGCCCAGATGGACAATCTCCTTGAAAGATGCCGTTGTGGATATTaatag
gctctgaagatatagTGCTGTTTTGCGTTGTGATATTTAGAGTTGTTTTC
CATTTTGTCATTGTAGTTGAAAAGAAGTTTATAAGTTTGTGTGGGAATTT
GTGTATTTCTAGTGATCTCCTCAGCCAATCGTGGGGTACAGAATCGAAAG
CTTTTCGGTAATCGATCCATGCTGTTGACAGATTACGTTTTGATTTCTTT
GCGTTTCCAAGTATCATGTCGTCAATCAGGAGTTGGTCTACGGTTCCTTG
GTTTCCTGAGATACCACCTATTTGCTCTTCAGGGAGTAGACTGAAGGTGT
CGAGATGAGACTTCATCCGTTTTGTAATTATACTTGTCATTATTTTGTAT
GTGATTGGCAAGCAAGTGATGGGTCTGTAGTTCGATGGGATCTCGGTTTG
TGGTTTCTTAGGTACGAGTGTTATGTAATGCCTTTTTGAAAGTggctaaa
gattttttctctctAACACATAGGGGAAGGAGGTTCCACGATGTTGAAGC
TCTGTAGGCAAAAGAGCGTTTGTATCCGACATAGTTGAGAGCTGGTTGGT
CGATTTTGCATTCGTTTCGTGTGCGTTTTGTTTTGGTTGATTTGTTGATG
AAGTCTTTCAATAACGGTGAAGTCAAGTCATTGTAGATTTTATAAGTTTT
GCATGTAAGATGTTTCTTATAGTAGAAAGCAAGAGGCTTCCACTTTGCTT
GAGCGAGAACTTCACAGTCTTTTACTTTCTTCTTG Run BLAST on NCBI protein sequence of TCONS_00021476-protein >TCONS_00021476-protein ID=TCONS_00021476-protein|Name=TCONS_00021476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MTSIITKRMKSHLDTFSLLPEEQIGGISGNQGTVDQLLIDDMILGNAKKS
KRNLSTAWIDYRKAFDSVPHDWLRRSLEIHKFPHKLINFFSTTMTKWKTT
LNITTQNSTISSEPINIHNGIFQGDCPSGLNFVISLLPLSWLIKRTSIGY
SIGPRNNRTTISHLLFMDDLKLYANNDEHLQDLLEIVSMFSNDIHMQFXH
VEMEEEVYSTSQTSTKTKSFNTVNTLKTPPNIS Run BLAST on NCBI transcript from alignment at sc0000386:188668..190252 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021476 ID=TCONS_00021476|Name=TCONS_00021476|organism=Clytia hemisphaerica|type=transcript|length=1585bp|location=Sequence derived from alignment at sc0000386:188668..190252 (Clytia hemisphaerica)
CAAGAAGAAAGTAAAAGACTGTGAAGTTCTCGCTCAAGCAAAGTGGAAGC
CTCTTGCTTTCTACTATAAGAAACATCTTACATGCAAAACTTATAAAATC
TACAATGACTTGACTTCACCGTTATTGAAAGACTTCATCAACAAATCAAC
CAAAACAAAACGCACACGAAACGAATGCAAAATCGACCAACCAGCTCTCA
ACTATGTCGGATACAAACGCTCTTTTGCCTACAGAGCTTCAACATCGTGG
AACCTCCTTCCCCTATGTGTTagagagaaaaaatctttagccACTTTCAA
AAAGGCATTACATAACACTCGTACCTAAGAAACCACAAACCGAGATCCCA
TCGAACTACAGACCCATCACTTGCTTGCCAATCACATACAAAATAATGAC
AAGTATAATTACAAAACGGATGAAGTCTCATCTCGACACCTTCAGTCTAC
TCCCTGAAGAGCAAATAGGTGGTATCTCAGGAAACCAAGGAACCGTAGAC
CAACTCCTGATTGACGACATGATACTTGGAAACGCAAAGAAATCAAAACG
TAATCTGTCAACAGCATGGATCGATTACCGAAAAGCTTTCGATTCTGTAC
CCCACGATTGGCTGAGGAGATCACTAGAAATACACAAATTCCCACACAAA
CTTATAAACTTCTTTTCAACTACAATGACAAAATGGAAAACAACTCTAAA
TATCACAACGCAAAACAGCActatatcttcagagcctattAATATCCACA
ACGGCATCTTTCAAGGAGATTGTCCATCTGGGCTGAATTTCGTCATAAGC
CTTCTACCGCTCTCTTGGCTTATCAAAAGAACATCCATCGGCTACTCAAT
TGGCCCGAGAAACAATCGCACAACTATCAGCCACCTGCTTTTCATGGATG
ACCTGAAATTGTACGCCAACAATGACGAACATCTCCAAGACCTCCTCGAA
ATCGTGTCAATGTTCAGCAACGACATCCACATGCAATTTGNCCACGTAGA
AATGGAGGAAGAGGTTTACTCAacatcacagacctctacaaaaaccAAAT
CATTCAATACAGTAAATACCTTAAAAACTCCACCGAACATCTCATGATAT
TAGTATCAACGTCACAAACCGACAGAGGAGCAAAATCCCTCCACCAAAAA
GCTGAGAAGTACCTAGCAGAACTCAACATTGACGAAAACCAAGCAAACGA
ACTTACAAAACCACAATTGAAATTGCAAGTCAAAACCAAACGCTCCAAAC
AAAAACTCGAAATCCTCAAAGAAAAACCCATGCACGGCCAATTCTTCATC
ACGCTAGACCAACCCCGCATCGACAAAGACGCTTCATTGTCATGGCTAAG
ATCCTCCACATTGAAAAGAACTACCGAATCAACCATCTGCGCAATCCAGG
AAAATGCAATAACCACCAAATACACACAAAAACATATCTTCAAAACCACC
AATGACGACACCTGTAGAGCCTGTAAGACCAAACCCGAAACCATCAACCA
TATCATCTCAGGATGCCCAGTCCTTGCACCAACCAAATATACCCAACGCC
ATGACAATGTGTGCCGATACATACACCTCCTCCTT Coding sequence (CDS) from alignment at sc0000386:188668..190252 >TCONS_00021476 ID=TCONS_00021476|Name=TCONS_00021476|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000386:188668..190252 (Clytia hemisphaerica)
ATGACAAGTATAATTACAAAACGGATGAAGTCTCATCTCGACACCTTCAG
TCTACTCCCTGAAGAGCAAATAGGTGGTATCTCAGGAAACCAAGGAACCG
TAGACCAACTCCTGATTGACGACATGATACTTGGAAACGCAAAGAAATCA
AAACGTAATCTGTCAACAGCATGGATCGATTACCGAAAAGCTTTCGATTC
TGTACCCCACGATTGGCTGAGGAGATCACTAGAAATACACAAATTCCCAC
ACAAACTTATAAACTTCTTTTCAACTACAATGACAAAATGGAAAACAACT
CTAAATATCACAACGCAAAACAGCActatatcttcagagcctattAATAT
CCACAACGGCATCTTTCAAGGAGATTGTCCATCTGGGCTGAATTTCGTCA
TAAGCCTTCTACCGCTCTCTTGGCTTATCAAAAGAACATCCATCGGCTAC
TCAATTGGCCCGAGAAACAATCGCACAACTATCAGCCACCTGCTTTTCAT
GGATGACCTGAAATTGTACGCCAACAATGACGAACATCTCCAAGACCTCC
TCGAAATCGTGTCAATGTTCAGCAACGACATCCACATGCAATTTGNCCAC
GTAGAAATGGAGGAAGAGGTTTACTCAacatcacagacctctacaaaaac
cAAATCATTCAATACAGTAAATACCTTAAAAACTCCACCGAACATCTCAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021476-exon-sc0000386-1491911889:188668..190252 | TCONS_00021476-exon-sc0000386-1491911889:188668..190252 | Clytia hemisphaerica | exon |
| TCONS_00021476-exon-sc0000386-1510915933:188668..190252 | TCONS_00021476-exon-sc0000386-1510915933:188668..190252 | Clytia hemisphaerica | exon |
| TCONS_00021476-exon-sc0000386-1575043694:188668..190252 | TCONS_00021476-exon-sc0000386-1575043694:188668..190252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:188668..190252 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
