TCONS_00021334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021334
Unique NameTCONS_00021334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021334 ID=TCONS_00021334|Name=TCONS_00021334|organism=Clytia hemisphaerica|type=transcript|length=2486bp
aaaaaataaagagtgtaagaaaaatctaaaaatgcaaaaaaaatattttg
cagtcgCCTGGCACCGAATTCTGAAATGGCAGTTCATGCATTGAGTGTac
aaaaaagatattttgacaCAATAAAAGATGGGACAAAAAAGGTTGAAGGT
CGTGTTGGTAAAGTTGACACATCAAAAGGAATCAATGAGAATTACAAAGA
ATCACAATCTGTTTATAAACAAGATGATGAGATCAAATTTGTAATATCTG
GTGAAGAAGAAACATCAGAGATTTTGATGTGTAAGATTttgaaagttgaa
ttttttgatACCATTGAAGACATGTTGAAATTATGTGGACTATCGAACTG
TTTACCTGGTATAACCTCTTACGAAGAAGGAGTTCAAATTTATCATGGAT
TTCCAAATTATGCAGAACGTGAAAAACTTTATGGAGCTATTGGAATTTAT
GTTCAAGTGTTGAAAACAGTATAGGATTTTTTTTGGTTATAATCTTTAAG
TTTATTACAGTATAACATGCATTCCACATTAAAAACAATACAGTTCAGTT
CTTATCTCTGGTTTTCTTTCtcagaatttttttattgtatttatcTATTC
AAAgcacttttttttaaaccaatcaagAGAATaatagaagaaaagaaaaa
tgaaaagagcTGCTTCAACATCAATTGATGACGAAGATGAGAGATATTAT
TGCACACCATCAACTCTCACTGAACAACACTTCAAGATTCTAAAATCACT
CTTCCAAAATGCAAACACAAATATGAGTTCATTGATAGAAATTTACCGTA
AATTGAGTGAAAAATTGGATGAAAGTGACTTTCCGAAATTGTACAAAGTA
CATGGTATAGTTCAACCTATATATAAATGGTTAGATTTGCTCTATTTGAG
AGAATTTAAGCACCAATGGGCGGGCAATCCAGATCCTGAGAAAATCAACT
TCAAGTTTTTATTCAAGAGGACAGATAAAGagattttaccattagaaagt
cACAAACAATACATTTATGAAGCACACAGAGGTATAAAGACATTCAAAGG
AATGTACAGCCGTGACAAACATCGTAATTATAGGCATAATGATGCTAAAA
CTACAAAGAAACTGTTAAGGACGAAATTTACTGTTGGAAAGTATGAGTTT
GGTATACCAGAGGACTCTATAATGAACGAGGTGTCGCTGTGTGAACAGTG
CAAGATATTCCAACGTGATAAGATACCTGTCATCAAGAAGCCTTGGATAC
CTCGTAAACATGTTGAACCGCCCCCAAAATCAACAAATGGTTCTGCAGAT
AATGGTGCAGTGTTGAGATACCCGATCACTCAAGCATGGGAATGGTCTAA
TGAAGAAAGTATCTGGTACAATAGATCTGGTTTGAAAGCAGAGAATGATC
GTCTTGCAAAGATTAGAAACATCATACAGGAAATTGGCGTTGACTTGCCT
GCTACACTTACTGGCAACCCTTCTGCTCAAAAACGTGTTTTGACAAAAAT
AGTTTGTGCAAAGATGATGATTAACGATAAAACGGAACAACTGCAACCAG
AACAATacaatatgaatgttcaaactctCTGCGAAGGAATGGACACCTTT
TTTGAAGAATCATTGAAACATTGCANAATGGTTCTGCAGATAATGGTGCA
GTGTTGAGATACCCGATCACTCAAGCATGGGAATGGTCTAATGAAGAAAG
TATCTGGTACAATAGATCTGGTTTGAAAGCAGAGAATGATCGTCTTGCAA
AGATTAGAAACATCATACAGGAAATTGGCGTTGACTTGCCTGCTACACTT
ACTGGCAACCCTTCTGCTCAAAAACGTGTTTTGACAAAAATAGTTTGTGC
AAAGATGATGATTAACGATAAAATGGAACAACTGCAACCAGAACAATaca
atatgaatgttcaaactctCTGCGAAGGAATGGACACCTTTTTTGAAGAA
TCATTGAAACATTGCAATTATAAGACGTTCATGTACGATATCAACAGTCT
ACTTTTCAATAAAGTCTCTCTCACCGATGATAGACAcaAACTTTGGGATA
ATCTATGGGAGCAATTCGAATCGAGGTTGCAAGACATTTTGAAGTTGGAT
CAAACAATACCTCGAAAACAAATCGATGGGTTCACTATTGACTTTGATAA
ACctgtacaattaacaaaacaagaTCTTGATGGATTTGAAATAGGCGTAA
AAGATCATGAAAAAGAGGCTGGAAACTCATCACTCGTgtcttcaaattaa
agaaaGTAGATTGAAAAGTGCTTTGATTGTTGCCATCATTTCATTGTACT
ATTATGATAGAGTTACAGGAGCCAATAGGATGTTTGTTATTGTGTAcagt
attttcagttttttagtatCTTTTTTATAGGAATTATTTTGTAGAAGTCA
CATGTTTTCCTTTTTATTATCGATTTGTTCATTTACATCACAAGTTATAT
ATGTATACTTAAATACAAAATCAACACAAGTCAACT
Run BLAST on NCBI

transcript from alignment at sc0000385:196180..200588+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021334 ID=TCONS_00021334|Name=TCONS_00021334|organism=Clytia hemisphaerica|type=transcript|length=4409bp|location=Sequence derived from alignment at sc0000385:196180..200588+ (Clytia hemisphaerica)
aaaaaataaagagtgtaagaaaaatctaaaaatgcaaaaaaaatattttg
cagtcgCCTGGgtgagtttttttttcgtcggccgcatttccggaaacaag
actactttttttggcctgattttctttttgaaatacaTGAAATCACTTAC
ATGGTTACCTTTCGTATATATGTTTGTTAATATCGATCTATTCAGAAAGT
TGTTTAATTCAAAAGGTTCCTTCTACATAGCCAGCTTTCTCTGCTGTTAT
TATATTATTAGCACCGAATTCTGAAATGGCAGTTCATGCATTGAGTGTac
aaaaaagatattttgacaCAATAAAAGATGGGACAAAAAAGGTTGAAGGT
CGTGTTGGTAAAGTTGACACATCAAAAGGAATCAATGAGAATTACAAAGA
ATCACAATCTGTTTATAAACAAGATGATGAGATCAAATTTGTAATATCTG
GTGAAGAAGAAACATCAGAGATTTTGATGTGTAAGATTttgaaagttgaa
ttttttgatACCATTGAAGACATGTTGAAATTATGTGGACTATCGAACTG
TTTACCTGGTATAACCTCTTACGAAGAAGGAGTTCAAATTTATCATGGAT
TTCCAAATTATGCAGAACGTGAAAAACTTTATGGAGCTATTGGAATTTAT
GTTCAAGTGTTGAAAACAGTATAGGATTTTTTTTGGTTATAATCTTTAAG
TTTATTACAGTATAACATGCATTCCACATTAAAAACAATACAGTTCAGTT
CTTATCTCTGGTTTTCTTTCtcagaatttttttattgtatttatcTATTC
AAAgcacttttttttaaaccaatcaagAGAATaatagaagaaaagaaaaa
tgaaaagagcTGCTTCAACATCAATTGATGACGAAGATGAGAGATATTAT
TGCACACCATCAACTCTCACTGAACAACACTTCAAGATTCTAAAATCACT
CTTCCAAAATGCAAACACAAATATGAGTTCATTGATAGAAATTTACCGTA
AATTGAGTGAAAAATTGGATGAAAGTGACTTTCCGAAATTGTACAAAGTA
CATGGTATAGTTCAACCTATATATAAATGGTTAGATTTGCTCTATTTGAG
AGAATTTAAGCACCAATGGGCGGGCAATCCAGATCCTGAGAAAATCAACT
TCAAGTTTTTATTCAAGAGGACAGATAAAGagattttaccattagaaagt
cACAAACAATACATTTATGAAGCACACAGAGGTATAAAGACATTCAAAGG
AATGTACAGCCGTGACAAACATCGTAATTATAGGCATAATGATGCTAAAA
CTACAAAGAAACTGgtgagattttaatttttttaagtttctcTGGACAAA
TCACTTAATTTCTCAACGCCATTATTTGTAGCAAATGGGGTTTATGAGCT
TCTATGAAAAAGCAGCACATAGCCTGTTGTAATAGATACGAGAGAGAGAA
ATTTGCTCAATGCCCAAGGCCATTGAAAATGCAAAATAATAAATTTATAG
GTAGTTTATAATTGGGTTTTTATTAGTCTTCTGTTTCTCTCCATTCAGTT
AAGGACGAAATTTACTGTTGGAAAGTATGAGTTTGGTATACCAGAGGACT
CTATAATGAACGAGGTGTCGCTGTGTGAACAGTGCAAGATATTCCAACGT
GATAAGATACCTGTCATCAAGAAGCCTTGGATACCTCGTAAACATGTTGA
ACCGCCCCCAAAATCAACAAATGGTTCTGCAGATAATGGTGCAGTGTTGA
GATACCCGATCACTCAAGCATGGGAATGGTCTAATGAAGAAAGTATCTGG
TACAATAGATCTGGTGGGAATTCTATGATTTTTAATTAAACTGTTTTCAC
CACTTTTTCTCTTTACAGCAAGAAGATAGAAAAGAGTCAGGTTGTGAAGT
TGATATGTCATTTcgtaatcagatggtttgagattcTTGGCTTGTGAAGT
CATTTCATGGTCCTGAGTAAAACCTCCAATTTTTTGGTCCAAGTGTTTTC
CAAGGTTGAAATACAATATAAAACGGTGCTTACCATATGttaggattttt
tttaataCTTGCAAAAGTGCATAACTTGTAACTTGAATATCTGGACTTCG
AAGAGATTTTAGTAAAACGATTTGGATTtgggtttttttttctcatttca
ttaaaataaatttacagccCAAAGATTTCATGTTCATACATACATACTGT
TTCGTGTTTTATAGGTTTGAAAGCAGAGAATGATCGTCTTGCAAAGATTA
GAAACATCATACAGGAAATTGGCGTTGACTTGCCTGCTACACTTACTGGC
AACCCTTCTGCTCAAAAACGTGTTTTGACAAGTAAGAAATTACAATCAAT
GtgagaattatgttttgaaATAATGTTAAAAACTGAATAATTGGAATACT
TTGACTACTAAGATCGGAAATAGATTTCTTACGGCTTAATAATCCGGAAA
GAATAACCAAGATATTTTTTAAACCTGCATATTCAACCTTCTCTGCAAGT
CTTGCTTTCATAATCCTAGAAATAGTTTGTGCAAAGATGATGATTAACGA
TAAAACGGAACAACTGCAACCAGAACAATacaatatgaatgttcaaactc
tCTGCGAAGGAATGGACACCTTTTTTGAAGAATCATTGAAACATTGCANA
ATGGTTCTGCAGATAATGGTGCAGTGTTGAGATACCCGATCACTCAAGCA
TGGGAATGGTCTAATGAAGAAAGTATCTGGTACAATAGATCTGGTGGGAA
TTCTATGATTTTTAATTAAACTGTTTTCACCACTTTTTCTCTTTACAGCA
AGAAGATAGAAAAGAGTCAGGTTGTGAAGTTGATATGTCATTTcgtaatc
agatggtttgagattcTTGGCTTGTGAAGTCATTTCATGGTCCTGAGTAA
AACCTCCAATTTTTTGGTCCAAGTGTTTTCCAAGGTTGAAATACAATATA
AAACGGTGCTTACCATATGttaggattttttttaataCTTGCAAAAGTGC
ATAACTTGTAACTTGAATATCTGGACTTCGAAGAGATTTTAGTAAAACGA
TTTGGATTtgggtttttttttctcatttcattaaaataaatttacagccC
AAAGATTTCATGTTCATACATACATACTGTTTCGTGTTTTATAGGTTTGA
AAGCAGAGAATGATCGTCTTGCAAAGATTAGAAACATCATACAGGAAATT
GGCGTTGACTTGCCTGCTACACTTACTGGCAACCCTTCTGCTCAAAAACG
TGTTTTGACAAGTAAGAAATTACAATCAATGtgagaattatgttttgaaA
TAATGTTAAAAACTGAATAATTGGAATACTTTGACTACTAAGATCGGAAA
TAGATTTCTTACGGCTTAATGATCCGGAAAGAATAAACAAGATATTTTTT
AAACCTACATATTCAACCTTCTCTGCAAGTCTTGCTTTCATAATCCTAGA
AATAGTTTGTGCAAAGATGATGATTAACGATAAAATGGAACAACTGCAAC
CAGAACAATacaatatgaatgttcaaactctCTGCGAAGGAATGGACACC
TTTTTTGAAGAATCATTGAAACATTGCAATTATAAGACGTTCATGTACGA
TATCAACAGTCTACTTTTCAATAAAGTCTCTCTCACCGATGATAGACAGT
AAGTTAATCTCGTTCAATTTTTTATAGGAAATAAAAGCGACTTTCGTTAA
AAATAAAAGGATATCGAAAATCGAACGCTCTTGATAGTATCCTTTATTTA
CTAGTTTAGGAGCATCTTAGAACATCCAGGAACATCTAGTGTTTGTTTGT
GAGCAATTATGAATGTTGAATTGAGTTGATTATTAACCTTGGTACTCAAA
TTGTCGTTAGAAACGTTCCCAAATGTTCTGGTGAAGTTATTGCAATGggg
catatcatgaataatgattTCTCTGTTGAGCCTGAACTCTtggatttctt
tattttcagcaAACTTTGGGATAATCTATGGGAGCAATTCGAATCGAGGT
TGCAAGACATTTTGAAGTTGGATCAAACAATACCTCGAAAACAAATCGAT
GGGTTCACTATTGACTTTGATAAACctgtacaattaacaaaacaagaTCT
TGATGGATTTGAAATAGGCGTAAAAGATCATGAAAAAGAGGCTGGAAACT
CATCACTCGTgtcttcaaattaaagaaaGTAGATTGAAAAGTGCTTTGAT
TGTTGCCATCATTTCATTGTACTATTATGATAGAGTTACAGGAGCCAATA
GGATGTTTGTTATTGTGTAcagtattttcagttttttagtatCTTTTTTA
TAGGAATTATTTTGTAGAAGTCACATGTTTTCCTTTTTATTATCGATTTG
TTCATTTACATCACAAGTTATATATGTATACTTAAATACAAAATCAACAC
AAGTCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011950XLOC_011950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021334-exon-sc0000385-1491911889:196180..196240TCONS_00021334-exon-sc0000385-1491911889:196180..196240Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:196180..196240TCONS_00021334-exon-sc0000385-1510915933:196180..196240Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:196180..196240TCONS_00021334-exon-sc0000385-1575043694:196180..196240Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:196441..197493TCONS_00021334-exon-sc0000385-1491911889:196441..197493Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:196441..197493TCONS_00021334-exon-sc0000385-1510915933:196441..197493Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:196441..197493TCONS_00021334-exon-sc0000385-1575043694:196441..197493Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:197728..197992TCONS_00021334-exon-sc0000385-1491911889:197728..197992Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:197728..197992TCONS_00021334-exon-sc0000385-1510915933:197728..197992Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:197728..197992TCONS_00021334-exon-sc0000385-1575043694:197728..197992Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:198394..198510TCONS_00021334-exon-sc0000385-1491911889:198394..198510Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:198394..198510TCONS_00021334-exon-sc0000385-1510915933:198394..198510Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:198394..198510TCONS_00021334-exon-sc0000385-1575043694:198394..198510Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:198699..198922TCONS_00021334-exon-sc0000385-1491911889:198699..198922Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:198699..198922TCONS_00021334-exon-sc0000385-1510915933:198699..198922Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:198699..198922TCONS_00021334-exon-sc0000385-1575043694:198699..198922Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:199324..199440TCONS_00021334-exon-sc0000385-1491911889:199324..199440Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:199324..199440TCONS_00021334-exon-sc0000385-1510915933:199324..199440Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:199324..199440TCONS_00021334-exon-sc0000385-1575043694:199324..199440Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:199629..199827TCONS_00021334-exon-sc0000385-1491911889:199629..199827Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:199629..199827TCONS_00021334-exon-sc0000385-1510915933:199629..199827Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:199629..199827TCONS_00021334-exon-sc0000385-1575043694:199629..199827Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1491911889:200139..200588TCONS_00021334-exon-sc0000385-1491911889:200139..200588Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1510915933:200139..200588TCONS_00021334-exon-sc0000385-1510915933:200139..200588Clytia hemisphaericaexon
TCONS_00021334-exon-sc0000385-1575043694:200139..200588TCONS_00021334-exon-sc0000385-1575043694:200139..200588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:196180..200588 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.19041	7.46637	1.7831	4.20344	2.61475	2.56946	4.70303	1.63009	2.35108	2.07443	0.464692	0	0	1.53969	1.25029e-08	0.877577	1.41091	2.80173	0.461282	0.818206	0	0	2.55322	3.36908	3.131	3.08671	0	0.666925	2.07858	2.94122
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top