TCONS_00021326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021326
Unique NameTCONS_00021326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021326 ID=TCONS_00021326|Name=TCONS_00021326|organism=Clytia hemisphaerica|type=transcript|length=1050bp
TAAGTGTATACACTTGTAGTGCTAGTGCACCACAAACACCACTATGGCAA
CTCAAACAACTATCATTATACAACAACACGGCAATCCATACACAGAACAA
CCATATCCACCACCCCAACACGCCAACATCGATCCCATCCAACCGACCTT
CAATGATTCAAAACCCGCCCAACCTGTAGATTACACCGCCCCTCAGCAAC
CTTATTATGTGGATATCCCAAAGGATTATACTAAAACTGGTGCCCCTTCT
GAACAATCACCGCCCGCGTATAACGCCAATAGTGGATACACTGGATCGAC
CGGAGGACAACGTAATTTTGAATTCTTGAAAACTGTACCTGGCATTCTGA
ACATCATCGCTCTTgtTTTGTTATTCACTGCGTGGATGGCGATGGCAGCA
TGGCGGGGCCACATCGGGTCCACATTTTATCTCTTGCATGTGGAtggttc
ttcatttttcttcttcaccattcttcttccttttttcgTGAAAGTTGGAT
ATTTATTACTTGTGGTGCTTGGACTCATCAAGTATAGATACATCGACAGA
CTTGACTGGAATTTTACTGTGATGGTGAATGACGGATTGAGTGGATTCTT
CATGCTTGTTTCATCCTGTATCGTTGCCCGAAGAGTGGAAGAACACCTAT
GTCTCAATCATAATTGTACCATCATTCAAACAGCTGCAGCATTTGGATTC
CTTTCATCATTCATGTTCGCTGGCATCGTAGCTTATTATTTCAAAAGATG
GAAGCAAGGACCTCCTGTTCACCAATGAAACAAATGAACATTCAAAGCAA
GAAATGGAGAGTTTTTTGGAGAGACTAATTTATTTTCTGAGAACAATAAA
TCATGGTAATTATAATTTACAACATCAATGAAGATCgatagttaaaaaaa
attgataatgaTTACAAATTTGATGTCGCTTCGATAACCAAcctaaaagt
gaaaaaaaagaagatgttTTACGATAAAAGATAATATTATACCTGATGAT
AATGTCACAATAATACTTAAATACTATTACTAATACTAATACTTTCCACT
Run BLAST on NCBI

protein sequence of TCONS_00021326-protein

>TCONS_00021326-protein ID=TCONS_00021326-protein|Name=TCONS_00021326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MATQTTIIIQQHGNPYTEQPYPPPQHANIDPIQPTFNDSKPAQPVDYTAP
QQPYYVDIPKDYTKTGAPSEQSPPAYNANSGYTGSTGGQRNFEFLKTVPG
ILNIIALVLLFTAWMAMAAWRGHIGSTFYLLHVDGSSFFFFTILLPFFVK
VGYLLLVVLGLIKYRYIDRLDWNFTVMVNDGLSGFFMLVSSCIVARRVEE
HLCLNHNCTIIQTAAAFGFLSSFMFAGIVAYYFKRWKQGPPVHQ
Run BLAST on NCBI

transcript from alignment at sc0000385:47162..51842+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021326 ID=TCONS_00021326|Name=TCONS_00021326|organism=Clytia hemisphaerica|type=transcript|length=4681bp|location=Sequence derived from alignment at sc0000385:47162..51842+ (Clytia hemisphaerica)
TAAGTGTATACACTTGTAGTGGTACGTATTTTGATGCAAACTTTGGTTAa
gatttttaatcattttgatTTCTGGGATTTTATATCTTGCGAGTCTCTCA
TATTGATTCTtcatttatttttacaaaacgGACATTGTCTCATTAAAAGA
AAAGCCTCGATTTATTAATGTTTCTATAGTGAACTTTGATGTAGAATTGT
TATTTATTTCAGCTAGTGCACCACAAACACCACTATGGCAACTCAAACAA
CTATCATTATACAACAACACGGCAATCCATACACAGAACAACCATATCCA
CCACCCCAACACGCCAACATCGATCCCATCCAACCGACCTTCAATGATTC
AAAACCCGCCCAACCTGTAGATTACACCGCCCCTCAGCAACCTTATTATG
TGGATATCCCAAAGGATTATACTAAAACTGGTGCCCCTTCTGAACAATCA
CCGCCCGCGTATAACGCCAATAGTGGATACACTGGATCGACCGGAGGACA
ACGTAATTTTGAATTCTTGAAAACTGTACCTGGCATTCTGAACATCATCG
CTCTTGTAAGATGAAATATTAATCACAGTATTTCAGTGCTAAAAATACCT
GCATTCTGTGGGCCAGGGACTGTAGTGTAAATTGAAATTTCCAAGAAAGC
CTGAAAAGCTTGCTCGCGAAAAATAACGTCATCATAAAATGCCCCAAAAA
AGGTCTAAAACTTTTCGAATCGACTGCGGGTTTTTTGGTGGTTTTTGGAC
CTCTTTCAGCCACCTCTGATTTATTTTTAGGTGACTGAGGATATGAAATG
ATGTCGTTCTACTCTAGAGAAATTGAATACTTTATCCCCAAAGCCTGTGC
TATAACTTCCTTAGATAGATTCCACTGGGTTTTGCTTTCAGTATTATTGT
ATTAAAATGCTAGAGCTAGATATATTAACTAACTTGTGTatgttgtgaat
ttttttttccaggtTTTGTTATTCACTGCGTGGATGGCGATGGCAGCATG
GCGGGGCCACATCGGGTCCACATTTTATCTCTTGCATGTGGAtggttctt
catttttcttcttcaccattcttcttccttttttcgTGAAAGTTGGATAT
TTATTACTTGTGGTGCTTGGACTCATCAAGTATAGATACATCGACAGACT
TGACTGGAATTTTACTGTAAGTGAGATCATCTTAGGTTACAtaatatctt
ccttcgtttcgagtgTAAAACGAGTGATGCGCCtaaaaagcctggagctg
tcaaTTATGTAGACTACTATCATCTGTATTGTCTGTACTGTGCAGCCACT
AATTTAATCTAACAGAAAAGCGATATAACCACGTTTGTCTTAACTTTAGC
AGTGCAATTTTggggcaattttttttcggagcACGTAAAGCTTTTTCGAA
TTCTTGGCTTGGAATTTTTTCCGTCTTTTaacgtattacttcgaataaac
gcccctcctttAACGAACGCCCCAGCAAATAAACACCTTTCCTCTCTTCT
ACTTCCCTAAGAGGGGCGTTTGTTTGAAACAAGTAGCTGTAAGAAAGTGC
gatatgagaaaaaaaattaaaaataagacgCTCGAAGTAATACTGTAAGA
tgaattcagtgaaaaattaCTTTATAGCCCTTTTGTGAAAAGCACATATG
AATTTTTAGGTGATGGTGAATGACGGATTGAGTGGATTCTTCATGCTTGT
TTCATCCTGTATCGTTGCCCGAAGAGTGGAAGAACACCTATGTCTCAATC
ATAATTGTACCATCATTCAAACAGCTGCAGTAAGTAACTACACCCACACT
GTCTCCCGATTTCTCGACTAGAAGTATTTCGTATTTAGGTTTAGTGTCTC
CCATTTTATATTCTAAGCCTTACAACATTTTTGATCTTTCCTATCTTGAG
ATCGCGTATGGCGGGTTTTAAGTCTaataatgttaaaactctacattCAA
CAAAAAGTAAGTTTTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNttaacttccatcccctttcagacacattgaagagtcattt
tgctctatttctcatcattttttactgaaattccatttgtctacaacctt
ttgtccggcattgtacCTTTAAGGGAAAGAAAGCAATATTACAAACAGGT
TATTTCTTCTCATTTTCAGGCATTTGGATTCCTTTCATCATTCATGTTCG
CTGGCATCGTAGCTTATTATTTCAAAAGATGGAAGCAAGGACCTCCTGTT
CACCAATGAAACAAATGAACATTCAAAGCAAGAAATGGAGAGTTTTTTGG
AGAGACTAATTTATTTTCTGAGAACAATAAATCATGGTAATTATAATTTA
CAACATCAATGAAGATCgatagttaaaaaaaattgataatgaTTACAAAT
TTGATGTCGCTTCGATAACCAAcctaaaagtgaaaaaaaagaagatgttT
TACGATAAAAGATAATATTATACCTGATGATAATGTCACAATAATACTTA
AATACTATTACTAATACTAATACTTTCCACT

Coding sequence (CDS) from alignment at sc0000385:47162..51842+

>TCONS_00021326 ID=TCONS_00021326|Name=TCONS_00021326|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0000385:47162..51842+ (Clytia hemisphaerica)
ATGGCAACTCAAACAACTATCATTATACAACAACACGGCAATCCATACAC
AGAACAACCATATCCACCACCCCAACACGCCAACATCGATCCCATCCAAC
CGACCTTCAATGATTCAAAACCCGCCCAACCTGTAGATTACACCGCCCCT
CAGCAACCTTATTATGTGGATATCCCAAAGGATTATACTAAAACTGGTGC
CCCTTCTGAACAATCACCGCCCGCGTATAACGCCAATAGTGGATACACTG
GATCGACCGGAGGACAACGTAATTTTGAATTCTTGAAAACTGTACCTGGC
ATTCTGAACATCATCGCTCTTgtTTTGTTATTCACTGCGTGGATGGCGAT
GGCAGCATGGCGGGGCCACATCGGGTCCACATTTTATCTCTTGCATGTGG
AtggttcttcatttttcttcttcaccattcttcttccttttttcgTGAAA
GTTGGATATTTATTACTTGTGGTGCTTGGACTCATCAAGTATAGATACAT
CGACAGACTTGACTGGAATTTTACTGTGATGGTGAATGACGGATTGAGTG
GATTCTTCATGCTTGTTTCATCCTGTATCGTTGCCCGAAGAGTGGAAGAA
CACCTATGTCTCAATCATAATTGTACCATCATTCAAACAGCTGCAGCATT
TGGATTCCTTTCATCATTCATGTTCGCTGGCATCGTAGCTTATTATTTCA
AAAGATGGAAGCAAGGACCTCCTGTTCACCAATGAATGGCAACTCAAACA
ACTATCATTATACAACAACACGGCAATCCATACACAGAACAACCATATCC
ACCACCCCAACACGCCAACATCGATCCCATCCAACCGACCTTCAATGATT
CAAAACCCGCCCAACCTGTAGATTACACCGCCCCTCAGCAACCTTATTAT
GTGGATATCCCAAAGGATTATACTAAAACTGGTGCCCCTTCTGAACAATC
ACCGCCCGCGTATAACGCCAATAGTGGATACACTGGATCGACCGGAGGAC
AACGTAATTTTGAATTCTTGAAAACTGTACCTGGCATTCTGAACATCATC
GCTCTTgtTTTGTTATTCACTGCGTGGATGGCGATGGCAGCATGGCGGGG
CCACATCGGGTCCACATTTTATCTCTTGCATGTGGAtggttcttcatttt
tcttcttcaccattcttcttccttttttcgTGAAAGTTGGATATTTATTA
CTTGTGGTGCTTGGACTCATCAAGTATAGATACATCGACAGACTTGACTG
GAATTTTACTGTGATGGTGAATGACGGATTGAGTGGATTCTTCATGCTTG
TTTCATCCTGTATCGTTGCCCGAAGAGTGGAAGAACACCTATGTCTCAAT
CATAATTGTACCATCATTCAAACAGCTGCAGCATTTGGATTCCTTTCATC
ATTCATGTTCGCTGGCATCGTAGCTTATTATTTCAAAAGATGGAAGCAAG
GACCTCCTGTTCACCAATGAATGGCAACTCAAACAACTATCATTATACAA
CAACACGGCAATCCATACACAGAACAACCATATCCACCACCCCAACACGC
CAACATCGATCCCATCCAACCGACCTTCAATGATTCAAAACCCGCCCAAC
CTGTAGATTACACCGCCCCTCAGCAACCTTATTATGTGGATATCCCAAAG
GATTATACTAAAACTGGTGCCCCTTCTGAACAATCACCGCCCGCGTATAA
CGCCAATAGTGGATACACTGGATCGACCGGAGGACAACGTAATTTTGAAT
TCTTGAAAACTGTACCTGGCATTCTGAACATCATCGCTCTTgtTTTGTTA
TTCACTGCGTGGATGGCGATGGCAGCATGGCGGGGCCACATCGGGTCCAC
ATTTTATCTCTTGCATGTGGAtggttcttcatttttcttcttcaccattc
ttcttccttttttcgTGAAAGTTGGATATTTATTACTTGTGGTGCTTGGA
CTCATCAAGTATAGATACATCGACAGACTTGACTGGAATTTTACTGTGAT
GGTGAATGACGGATTGAGTGGATTCTTCATGCTTGTTTCATCCTGTATCG
TTGCCCGAAGAGTGGAAGAACACCTATGTCTCAATCATAATTGTACCATC
ATTCAAACAGCTGCAGCATTTGGATTCCTTTCATCATTCATGTTCGCTGG
CATCGTAGCTTATTATTTCAAAAGATGGAAGCAAGGACCTCCTGTTCACC
AATGAATGGCAACTCAAACAACTATCATTATACAACAACACGGCAATCCA
TACACAGAACAACCATATCCACCACCCCAACACGCCAACATCGATCCCAT
CCAACCGACCTTCAATGATTCAAAACCCGCCCAACCTGTAGATTACACCG
CCCCTCAGCAACCTTATTATGTGGATATCCCAAAGGATTATACTAAAACT
GGTGCCCCTTCTGAACAATCACCGCCCGCGTATAACGCCAATAGTGGATA
CACTGGATCGACCGGAGGACAACGTAATTTTGAATTCTTGAAAACTGTAC
CTGGCATTCTGAACATCATCGCTCTTgtTTTGTTATTCACTGCGTGGATG
GCGATGGCAGCATGGCGGGGCCACATCGGGTCCACATTTTATCTCTTGCA
TGTGGAtggttcttcatttttcttcttcaccattcttcttccttttttcg
TGAAAGTTGGATATTTATTACTTGTGGTGCTTGGACTCATCAAGTATAGA
TACATCGACAGACTTGACTGGAATTTTACTGTGATGGTGAATGACGGATT
GAGTGGATTCTTCATGCTTGTTTCATCCTGTATCGTTGCCCGAAGAGTGG
AAGAACACCTATGTCTCAATCATAATTGTACCATCATTCAAACAGCTGCA
GCATTTGGATTCCTTTCATCATTCATGTTCGCTGGCATCGTAGCTTATTA
TTTCAAAAGATGGAAGCAAGGACCTCCTGTTCACCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011947XLOC_011947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021326-exon-sc0000385-1491911889:47162..47182TCONS_00021326-exon-sc0000385-1491911889:47162..47182Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1510915933:47162..47182TCONS_00021326-exon-sc0000385-1510915933:47162..47182Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1575043694:47162..47182TCONS_00021326-exon-sc0000385-1575043694:47162..47182Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1491911889:47374..47716TCONS_00021326-exon-sc0000385-1491911889:47374..47716Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1510915933:47374..47716TCONS_00021326-exon-sc0000385-1510915933:47374..47716Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1575043694:47374..47716TCONS_00021326-exon-sc0000385-1575043694:47374..47716Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1491911889:48124..48327TCONS_00021326-exon-sc0000385-1491911889:48124..48327Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1510915933:48124..48327TCONS_00021326-exon-sc0000385-1510915933:48124..48327Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1575043694:48124..48327TCONS_00021326-exon-sc0000385-1575043694:48124..48327Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1491911889:48821..48940TCONS_00021326-exon-sc0000385-1491911889:48821..48940Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1510915933:48821..48940TCONS_00021326-exon-sc0000385-1510915933:48821..48940Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1575043694:48821..48940TCONS_00021326-exon-sc0000385-1575043694:48821..48940Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1491911889:51481..51842TCONS_00021326-exon-sc0000385-1491911889:51481..51842Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1510915933:51481..51842TCONS_00021326-exon-sc0000385-1510915933:51481..51842Clytia hemisphaericaexon
TCONS_00021326-exon-sc0000385-1575043694:51481..51842TCONS_00021326-exon-sc0000385-1575043694:51481..51842Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021326-proteinTCONS_00021326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:47162..51842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0869781	0.0423767	0.0491655	0.0934597	0.0581357	0.0458109	0.111558	0.103673	0.684648	0.134217	0.346032	0.226499	21.2759	25.3028	15.6324	11.4542	3.35078	3.81589	28.5198	19.629	5.70404	5.57648	3.04692	4.9008	6.33211	8.13997	1.16263	0.257628	0.0967783	0.0986594
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008253Marvel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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