TCONS_00021317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021317
Unique NameTCONS_00021317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021317 ID=TCONS_00021317|Name=TCONS_00021317|organism=Clytia hemisphaerica|type=transcript|length=271bp
ggtaatattttcattgcaATAATTGGTTGCTGAATGACAGAAGGTATTCT
TGCACTCTTTAATGCTTAATTGTAAGAGTCAATCTGTACCATCTTCAAGG
GATTGACAATACTATACCATCACGTGTTGTATAGCACAATAACCTCAGTC
TAATAAGTGAACAACGAAACTGAGGACTGGAGTGAGattgtgggtcatat
ttttggaaaatatcaccgtaatataattttataagaccccctcccatttt
atgaattttttctgaaaagNN
Run BLAST on NCBI

transcript from alignment at sc0000382:229522..229792

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021317 ID=TCONS_00021317|Name=TCONS_00021317|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0000382:229522..229792 (Clytia hemisphaerica)
NNcttttcagaaaaaattcataaaatgggagggggtcttataaaattata
ttacggtgatattttccaaaaatatgacccacaatCTCACTCCAGTCCTC
AGTTTCGTTGTTCACTTATTAGACTGAGGTTATTGTGCTATACAACACGT
GATGGTATAGTATTGTCAATCCCTTGAAGATGGTACAGATTGACTCTTAC
AATTAAGCATTAAAGAGTGCAAGAATACCTTCTGTCATTCAGCAACCAAT
TATtgcaatgaaaatattacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011938XLOC_011938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021317-exon-sc0000382-1491911889:229522..229792TCONS_00021317-exon-sc0000382-1491911889:229522..229792Clytia hemisphaericaexon
TCONS_00021317-exon-sc0000382-1510915933:229522..229792TCONS_00021317-exon-sc0000382-1510915933:229522..229792Clytia hemisphaericaexon
TCONS_00021317-exon-sc0000382-1575043694:229522..229792TCONS_00021317-exon-sc0000382-1575043694:229522..229792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000382supercontigsc0000382:229522..229792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4991	17.5898	3.79594	8.57333	258.873	217.258	119.126	124.959	41.1726	39.2556	62.3032	47.7896	36.2743	33.6179	27.5315	37.616	30.7919	36.0152	39.5079	54.0911	28.9672	37.9961	18.5125	32.9316	69.5471	89.4389	50.4384	41.5704	18.6326	23.9606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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