TCONS_00021289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021289
Unique NameTCONS_00021289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021289 ID=TCONS_00021289|Name=TCONS_00021289|organism=Clytia hemisphaerica|type=transcript|length=256bp
GAAGCCCTGAATATACCGCAAAATTAGTTTCAtgataattttttctaatt
cattcgTTGCCTTTTATAGGGACCACTGGGTGAACCGATAATCGAGATCG
TTCTCAGGTAGACATGACATGTCAACTTGACTAAAACACGACAGAAAAAT
CGTTTGTTCACCATCGAAGCGCGAAGAACTATGCACCCGATTGTATCCAC
GGAGATTATATATacaaattcttttattacacccctatatcagtgacccg
gtcagt
Run BLAST on NCBI

transcript from alignment at sc0000380:275788..276043

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021289 ID=TCONS_00021289|Name=TCONS_00021289|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at sc0000380:275788..276043 (Clytia hemisphaerica)
actgaccgggtcactgatataggggtgtaataaaagaatttgtATATATA
ATCTCCGTGGATACAATCGGGTGCATAGTTCTTCGCGCTTCGATGGTGAA
CAAACGATTTTTCTGTCGTGTTTTAGTCAAGTTGACATGTCATGTCTACC
TGAGAACGATCTCGATTATCGGTTCACCCAGTGGTCCCTATAAAAGGCAA
cgaatgaattagaaaaaattatcaTGAAACTAATTTTGCGGTATATTCAG
GGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011918XLOC_011918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021289-exon-sc0000380-1491911889:275788..276043TCONS_00021289-exon-sc0000380-1491911889:275788..276043Clytia hemisphaericaexon
TCONS_00021289-exon-sc0000380-1510915933:275788..276043TCONS_00021289-exon-sc0000380-1510915933:275788..276043Clytia hemisphaericaexon
TCONS_00021289-exon-sc0000380-1575043694:275788..276043TCONS_00021289-exon-sc0000380-1575043694:275788..276043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:275788..276043 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15237	1.09874	2.57165	2.49249	62.6701	42.8495	58.7462	56.3946	15.1983	10.3867	11.8259	17.395	16.8087	18.6706	14.0135	13.4954	15.9169	22.515	9.91143	6.55098	12.1492	2.80989	2.20929	4.73714	36.2239	47.5777	0	0	3.2777	3.29836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top