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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021278 ID=TCONS_00021278|Name=TCONS_00021278|organism=Clytia hemisphaerica|type=transcript|length=992bp
cagaattccaaaaAAGTTGGGCTAAAAGTATGGCACATTTCACAACGGTT
TATCATGGACATATCTTACCAAATGGTATGGTTCCGTTGCATACATCACA
AGGACAAGAATTGCTTCagaaaacaacaaagaaaaataaaattgttgtgA
ATGATTTTAAAACTCAAATTGGCGACACTAACTGTGGCCCAACCTCTCTA
GCATTGGTTTTAAATGCGATCAATAGTTTTCATGTTAAACTTTCAGATCC
TGATTTAACGGACAAAGAATATGAAACCCTGATGGAAAAAATGAATGATG
ACAAGGAATTAATTCTGACTGAGTTTGATATTATTAACCATGGAAAAGTG
AAAGATTATTTTAGAGATATCAATATTGAAAAGAATGGGATGACTTTGTT
ACAGCTGGGACATGTTGCTACTCGTTTGGGATATGGTGTGAATACTTATT
TTGCTTACAATAATTCAATAGAAATATCTGaggataaaaaaagtgaattc
aACGATTTGATTAGTTCACCAACTTTTCATACACTCGAAACATCTAGTGA
TTTTGAAGCACTTGTTGAAAACCGTATTAGAAGGCCAGTAACTGGCGTGA
TATTAAATTATGACATGTCAAAATTAGGTTATACATCGTTCCCAGGACAC
TACAGCCCCATTGGAGCTTTGAATGATGAAATGATCCTTGTGATGGATGT
ATGGAAACAAACAAAACCTGCTTGGGTTGATAAGAAACTCTTGTTTGATG
CAATGTCAACTGTCGATAGTGATTGTGGATTTCCAAGAGGACTTCTACAT
ATTCATGAACTTTTATAGTATATTAGCATCACAACTATTGAATTGTTTTa
ctttgaaattcttttatCACATGCCTAAGTTACTCctaatttttaaatca
ataagTTCAAATGattcttttttgctttaatCTTTTCAtggattgggctc
ttccagaaaaaatccgttcatggggggtggaggatatattat Run BLAST on NCBI transcript from alignment at sc0000380:300914..303564- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021278 ID=TCONS_00021278|Name=TCONS_00021278|organism=Clytia hemisphaerica|type=transcript|length=2651bp|location=Sequence derived from alignment at sc0000380:300914..303564- (Clytia hemisphaerica)
CAGAATTCCAAAAAAGTTGGGCTAAAAGTGAGTATCTTTGAAAGAATTTT
TGTTTGTTGTCATTTTTCTATCTGTAGTGTGCCAGACACCAGAGGTGACA
AAGTTGAAATATATAGACTGGCATAGGATAAAGTTCAAAGTTCAAAGAGG
GGGTTATAAATCTAAAGAATCCAGTTTGCAGAGTGCTCGAGATCTCGAGT
GCACAACTCGGAAAAAGTTGAGTGCAGCTGTAAAATTGGAGGCTTTAAGC
TTTTTTCACATAATGCACGTAAAATTTTACTTTAGACCTTACGGAAAATC
GTTCGTAAGGCTGTCTTTTGAGAATTTCCCCAACATTATGACGTAGAGTT
TTTGTTGATTAAGACAGTGTAGACCTAAAGCTCTAAACCAGCATCTAATA
ACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTATAAAGTG
CACTTACAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTGCGGGG
CTTTGGCTTAAGTGCTTGAGTGCAGCATAAGGGTACAAAGTCCAAATATG
CGTTTCCCGTAATTTTTGTATGAAGAGTTAGGTCTATACTGTAAGAGAGG
GGGTCTTACGTGACTTTTTCTTCCGTTCAAAACTTTTTGAACGTAAGCAA
ACTCTACATACTGACATAAGGCCTTAAAACACTACGTAAGCTTAGAGAAA
TTCCCCAATCTTCAAGGTCTTAGGTAAAATTTTACTTACATGTAAAAAAA
GCTTTAAGATGCAAGTGCAGACGGTTTTTTAACCCTAAGTGCAGAGTTCC
ACTATTTTCTCCTCAAGTGCGGCTAATTTTAGCAATTTTTTTGCCTTTTG
GGCCAATTTTTAAGGTATAGGTGCTCCTTGTCTGGACCAAAATTTATCAG
GTGCACTCTTGCAGTGTTGAATTGGTATTTCCAAATTTTCCAATAATTGA
CTGAAAATACCAAAATACCAACATAAATAAGAGTCTTTTACCAATTAATT
TTTCCCCTGCCAATGGACCAATATCCTGTAAGCCCCCCCCCTAATATGCC
AAATGTTTTGAACTCCAAATGAAAATAAAAACACAGCATTGATTTTTTTA
AACCTCTATCAAAAACTGAATATAGGCTGTATGAATTTTTCAGGAATTGA
TTCTTACTCTCACTCTTTGTCATTTTTAAATTTTTCAAAATTTTTTACAT
CGATATCTCCCAACTTCCCAATGGGCACAAGTTTGCAATCAAATTTTAAC
ATTATCAAGAATTATCCCCATTTGCAATAATTATTTGAAAAGGGCTTCAA
ATTTTTAGTTTGATTTAATATTGGATAACTAATTATATTGTTCTGAAAGT
CTAATTAAGTATACATTCTTCTTTTTTATCTCAAAGGTATGGCACATTTC
ACAACGGTTTATCATGGACATATCTTACCAAATGGTATGGTTCCGTTGCA
TACATCACAAGGACAAGAATTGCTTCAGAAAACAACAAAGAAAAATAAAA
TTGTTGTGAATGATTTTAAAACTCAAATTGGCGACACTAACTGTGGCCCA
ACCTCTCTAGCATTGGTTTTAAATGCGATCAATAGTTTTCATGTTAAACT
TTCAGATCCTGATTTAACGGACAAAGAATATGAAACCCTGATGGAAAAAA
TGAATGATGACAAGGAATTAATTCTGACTGAGTTTGATATTATTAACCAT
GGAAAAGTGAAAGATTATTTTAGAGATATCAATATTGAAAAGAATGGGAT
GACTTTGTTACAGCTGGGACATGTTGCTACTCGTTTGGGATATGGTGTGA
ATACTTATTTTGCTTACAATAATTCAATAGAAATATCTGAGGATAAAAAA
AGTGAATTCAACGATTTGATTAGTTCACCAACTTTTCATACACTCGAAAC
ATCTAGTGATTTTGAAGCACTTGTTGAAAACCGTATTAGAAGGCCAGTAA
CTGGCGTGATATTAAATTATGACATGTCAAAATTAGGTTATACATCGTTC
CCAGGACACTACAGCCCCATTGGAGCTTTGAATGATGAAATGATCCTTGT
GATGGATGTATGGAAACAAACAAAACCTGCTTGGGTTGATAAGAAACTCT
TGTTTGATGCAATGTCAACTGTCGATAGTGATTGTGGATTTCCAAGAGGA
CTTCTACATATTCATGAACTTTTATAGTATATTAGCATCACAACTATTGA
ATTGTTTTACTTTGAAATTCTTTTATCACATGCCTAAGTTACTCCTAATT
TTTAAATCAATAAGTTCAAATGATTCTTTTTTGCTTTAATCTTTTCATGG
ATTGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021278-exon-sc0000380-1575043694:303538..303564 | TCONS_00021278-exon-sc0000380-1575043694:303538..303564 | Clytia hemisphaerica | exon |
| TCONS_00021278-exon-sc0000380-1575043694:300914..301878 | TCONS_00021278-exon-sc0000380-1575043694:300914..301878 | Clytia hemisphaerica | exon |
| TCONS_00021278-exon-sc0000380-1510915933:303538..303564 | TCONS_00021278-exon-sc0000380-1510915933:303538..303564 | Clytia hemisphaerica | exon |
| TCONS_00021278-exon-sc0000380-1510915933:300914..301878 | TCONS_00021278-exon-sc0000380-1510915933:300914..301878 | Clytia hemisphaerica | exon |
| TCONS_00021278-exon-sc0000380-1491911889:303538..303564 | TCONS_00021278-exon-sc0000380-1491911889:303538..303564 | Clytia hemisphaerica | exon |
| TCONS_00021278-exon-sc0000380-1491911889:300914..301878 | TCONS_00021278-exon-sc0000380-1491911889:300914..301878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:300914..303564 - |
Blast
The following BLAST results are available for this feature:
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