TCONS_00021270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021270
Unique NameTCONS_00021270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021270 ID=TCONS_00021270|Name=TCONS_00021270|organism=Clytia hemisphaerica|type=transcript|length=2001bp
AATACACGTAATTTTCAAACCTCATTGACTTTATTGATATATCGTGTTCG
GTTGTATAATTTCATAGTTGGTCAAGTAGTTTTTATAAACGCTTTTAACA
CTATATAAGACTTGGTAACGTGTACTTTATTGAGAAAATTCGTTTGTCTA
ATGGATTACTAACACAAGCTCGTAAACTTTCCTCCTTGATGTCTGACAAC
ACAAAGTCAAAGTTTATGGCAAAGAAGGTGTACCGCTGACATTGCAATGC
AAGAATAATACCGCGGGTCGATTCCAATCAGTAATATGGACAACAAACGC
ATATTCAAACTACAAATACACAGCATTCAGTTACAATCATCTTGGAGAaa
tgaaaattcataaaaactTTCGCAATAGGATTCACAGAGCTAGTGGTACC
TCTATCCAGTTATTGAACAGCAAATTGACCGATACTGGGAATTGGGAATG
CGATATCATTTTCACGTATAGGAAAGGAAATGAAATCAAAGAACGAAAAC
GAGTCAAGACATTAGCTAATTATGATGTCATCATTGTCAGTCCACCAACA
ATCAAGCATGTGTACCCACTCTCAGTCTCTGCACCACTAACATACAAAAA
AGAAGCAATCTGTGAAGCCTACAGTCCGAACCCTTTTACTTTAACATGGA
TCAAAATCCACGGCAATTTCACCAAAGACACTGTCATGGATATTCAGGAG
AACTTTGCAAATAACCAATACAAGAAGAGGAATATCATAACATTTAATAG
TTTGTCTGTAAATGATATCGGACAGTATCTATGtgttgcaaaaaatattg
ccgGACAGGTGTCAAGAGAAGTGGAGGTCAATGTTGAAGCAAAACCAATG
ATGCTTGTACCCAAACCTCGAGTCCATGTCAACATTGGACAAAGCGTTGA
GCTGAAATGCGTTGCTATGGGTTACCCTAAAGTCTCCTTCGAATGGTTAT
TTACTCACAACTACGAACAAATCCAACTCATCCCCACTACGAAGAAGGGT
GATTTTTCTGTTTCCCGAACACGTTTTCAATACTATGATGGCAAAGAACG
CTCCACCTCGGTGttgagaattgaaaatgttactCCAAAGCATTGGGGAA
CGTATCGATGTCAAGCAGAAAATAAGATTGGTTATGCAGAAGCTAAATTC
ACTATCGAAGGCCATAGTATCCCAGATGCTCCAGCCCTCCTCAATACAGA
AGATATCGGCAAACATCACATCACGTTGTTATGGTTACTAGACAAAGCTA
ACGGTCAAATCAAGTCCATTTTTATCGAGAAACGACAAATCGGTCAAAAA
GAATGGGACCGAGTGGAGGTACACAAAGCCATTACCAAATACACTTTCAG
TAATCTAGATGAAGATACGTTGTTTGAATTTCGGCTAAGAGCAACGAACG
TGGTCGGAACAAGCGCGTACAGTGAAATACAAAAACTGAGAACTAATAAA
ACTCCTATCGTTGcCAAAAGCAGTAAGAAAGATACACCAAAAGAAGAATC
AAAAACAAAGAACATTATTTTTGGTCTTGACATTATTGCATTGACAGCCA
TTGGTGGCGGAATACTCATCCTGATTACGTGCGTCTGTGCAGTGGGAATC
ATTGTAGTGCAACGGAAGAAATTTCGTTCtcagaaaaagagaaaaagtac
tGAAAAGAAAACACTAATTCAAATGAACAGACCGGCAAGTAGAACATCGG
TATGAAGGAAAGGGAGTATGAGATATCAAATGGGTGTCGACGGAGGAAGG
TTCGACGATGGCTTGACCTTGGTTGAAATAAAAGGTCTGTGATAAACGTC
CGTGGTCCGTGAAATATATCTTTATGTATGGCGTAATTTTCAAGGTGGCT
CATATCGGAGGTTCAGGttacttaacaaaagagaaaacCCAGTTTTGCAT
CGACTTTAAATGAGTGCTGATATGTCCAACttttagaaaaaagcaaaaag
attgGTCAATTAGACCTTCTTTGTCCTTTTCTTGGCtaaaatgtaaagaa
a
Run BLAST on NCBI

transcript from alignment at sc0000380:177779..184586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021270 ID=TCONS_00021270|Name=TCONS_00021270|organism=Clytia hemisphaerica|type=transcript|length=6808bp|location=Sequence derived from alignment at sc0000380:177779..184586- (Clytia hemisphaerica)
AATACACGTAATTTTCAAACCTCATTGACTTTATTGATATATCGTGTTCG GTTGTATAATTTCATAGTTGGTCAAGTAGTTTTTATAAACGCTTTTAACA CTATATAAGACTTGGTAACGTGTACTTTATTGAGAAAATTCGTTTGTCTA ATGGATTACTAACACAAGCTCGTAAACTTTCCTCCTTGATGTCTGTAACA ATCTAAGTACTGCTACAAATTTTTGACTTGATTACGTTATCGTTTATCAA GATAAAGATTTCAAACATCAAGAATATTTTGGCTTTCGAAAATATGGATA TTTCTATTAGAAGTTACTTTTTGTTAACGATCTGTTGCATTTCGCTGATT TCAGGATCCAGTAAGTATCATTTTGTTCATGAATTTAATTTAAATTTTTA AGATTAAATATAAATGCTAATATGAAAGAAGCTTTCCAATGGAAAAATCT GGAAATATCTTTAAAAATGCAATAATACTGTAAAACAGATGATTCTAAAA TTATAGTATCTTTCCGAATTTTATTTCTCGTTTTTTGGGGGCCTTTATTC GTTATTCGTTATTCGTTATTCGTTACTCCACACTTCTTCTCCATAAGAAA GATACCCTGAAATTGATCACTACTTGGAAACTAATGACCTCTCAGACCTA GACCGAAGGATGACTGACGATGGTGAAAAAAGTTCTCATCTCTCTGTAAA AGCTTTTAAAAATCATATATTGTTCTTCATAGGACAACACAAAGTCAAAG TTTATGGCAAAGAAGGTGTACCGCTGACATTGCAATGCAAGAATAATACC GCGGGTCGATTCCAATCAGTAATATGGACAACAAACGCATATTCAAACTA CAAATACACAGCATTCAGTTACAATCATCTTGGAGAAATGAAAATTCATA AAAACTTTCGCAATAGGATTCACAGAGCTAGTGGTACCTCTATCCAGTTA TTGAACAGCAAATTGACCGATACTGGGAATTGGGAATGCGATATCATTTT CACGTATAGGAAAGGAAATGAAATCAAAGAACGAAAACGAGTCAAGACAT TAGCTAATTATGATGTCATCATTGTCAGTAAGTTCAATTTAAGTCCAGTC CACCGGTCAATATTTAATTCTCATAGTTCTTATATGACTAGCATACAGCA CCCGAGTATCAATCTATTGAAGCAAGGTCGGCATTCATAATTTTGTGAAG GGACAAAAACTTAAAATAAGAACAACCGAAGCACAGCTAAAAATTACTGC TCCTTATAGAAATTCCTTAGTTTTTTTGTTTGTCACATATTTTTTTTTTA ACTTCCAAACAATTTATTGGAGGATTTTACGACAACAATTTTGTGTTTTC ATTTCGTTGAGTGGTAATTCTGTTTCCTGGACGAAAAATATTTCTGCTTG TTTGTAGCAATATTTTGACAGAAGACACCTTTTTACCACATACCATCAAA ATCATCTTTTGAACGTACAAAATACGTCTCGGGCAACTATTTCTATATCT GGTAGAAGAGCACTTAGCACATTAATGACACTCGACATTCATCAAAGGGT TCTTTATTAGCGAATATCGCGAACTTTGATAACGGTTATATCTTAAATCC TACTTACGATTTCATCCAAAAAATACACATTACTGTAAAGCTAGCTTTTC ATGCTATTCTTTTTATACGTCACATATTCACATTTAAAAGAGCATCTACA AATGCAAGGAGACTTATCTTGAAGAAAAAGTCACGTCTTTGTAAAAAGCC CTTCTATATTCCCACTGTCATAGCGAGTACTTGTGTTTTTCTGCAACGCA GCCGGTTTTTTATTTTTGTAGACCCTTACTGAGAACGACAGTGAATCAGT ACTTTTGCCGTCCTTGATTTTGCGGGCCAAAGCTGCGATTTGTTCAAAAC CGTCTAAGTCACTTCGCCTTATCTTCAGATACATAACTTCACTAGAAGAC ATTAGCGTAACGTACAATGCAGTCTTTCTTCCAATAAGAGTCAGTAAATT TTGACTCAGTCTTCCCTGTTCTATTTTTTTCTAATTTTTTTAAGTTTTTC CAATGAATAAATTGTTCATATTTCTATTTTTATCTTCTACCCGTTAAATT CTACTTTTCAGGTCCACCAACAATCAAGCATGTGTACCCACTCTCAGTCT CTGCACCACTAACATACAAAAAAGNTCAGGTCCACCAACAATCAAGCATG TGTACCCACTCTCAGTCTCTGCACCATTAACATACAAAAAAGAAGCAATC TGTGAAGCCTACAGTCCGAACCCTTTTACTTTAACATGGATCAAAATCCA CGGCAATTTCACCAAAGACACTGTCATGGATATTCAGGAGAACTTTGCAA ATAACCAATACAAGAAGAGGAATATCATAACATTTAATAGTTTGTCTGTA AATGATATCGGACAGTATCTATGTGTTGCAAAAAATATTGCCGGACAGGT GTCAAGAGAAGTGGAGGTCAATGTTGAAGGTAAGAGTATTTCCAGTTTCA ACTCGAAATTAAATTTTCAACCTTTTCAACTGACAAATTCGAATCTTCAT GGATAGTCTATTTCTCAGTGCAAGGCTAAGATCAGCTTTAGGTGAAATTT CTGGTAGCAAAATAACTTCAAAAAAGGGAACGTGTTTATCCATGGCTGTA ATCTTAAATTGATTTGCGATATTTACAAATTTTCCTATTAATACACCCCT TTCTCACAGACCCGTGGAGGTAAAAGTAACGGACTGAAACTCGATTGGGA TTGTTATTCCCATATTTTTTATGGCTGAGGATTTAAATTCTTTTGTTTTC AAGTCAGAAAACTCAGTGGGGATTAGAAAAAAAGCATAATTTTTTGAAGT GAAGATTGGTTTATTTGATTATTTTCAGTGGCGACAAAAATGGGACGATA ATTTTCCACCCGGGGACGATATTTTTCCAGTGGGAAGGGTTCCCAGTGGG TCTGTGAGAAGGGGATGTTTTAAATGGCTTCTTTTGATAAAATTATATTT TTCTTTGCTTTCAAAAGGTTTGCACGCGACAAACCTCGTGTCAGATGCCA CAAATGGCCTCCCTAAACTTGTTTTGAAAGTCATTTTGTCACAGAAACAA TAACAAAGATGCTTTAAAGAAAATACCTACAAAAAGCATTGCTAAAATTC AGAAAACAGAAATTTCCTTGCCTTGAGACATACCCTGAATTTGCGATGGA CAAATTACTCAAAAGCTGATCCCAAGCTGATGTACGAGATTTTAATTTAT TTCTGATAAAATTCCCTTGAGAACGGACCGAGTCCGAAACATGTCGGGAA AAATCAAAATATAGTAGCCGCATTCTTTTTCACCGTTCAACAATTTATTT CTGATATATTTCTGGCTTATTCCAAATTTTTTCTTGATTTGTGATTCATT TTGATTGATTTTTGATTCGTGAAAAAGGTGTTCGAGATTTATACTTTGTG ATTTACGAAGGAGGTAAATTCCAGGTGAAATTCCATCCTATCGGAAAACG ATACTGAATTTCAATACCGACCAGAAACAGGTTTTAAGAACTCCAAGTGT ATATTTGATTTCTAAATCGACATTGATAAGACTAGATTATGCTCTTTAAC TCTTGCTTCAAGACTTCTTCTAATAGCATATTACTAATATCAGTGATCAA AAAGATTTTGAAATTTCCTTTTCAGCAAAACCAATGATGCTTGTACCCAA ACCTCGAGTCCATGTCAACATTGGACAAAGCGTTGAGCTGAAATGCGTTG CTATGGGTTACCCTAAAGTCTCCTTCGAATGGTTATTTACTCACAACTAC GAACAAATCCAACTCATCCCCACTACGAAGAAGGGTGATTTTTCTGTTTC CCGAACACGTTTTCAATACTATGATGGCAAAGAACGCTCCACCTCGGTGT TGAGAATTGAAAATGTTACTCCAAAGCATTGGGGAACGTATCGATGTCAA GCAGAAAATAAGATTGGTTATGCAGAAGCTAAATTCACTATCGAAGGCCA TAGTAAGTTGGTTTTCGTTTCCAAAACTATGTCTAAAATCATTTAAAGTC GCTTTTTTATAGAATCTTCGATTCTCGATTTTGTCAACTTTGTTCTTTTT TTAAAAATGTACACGAGAAGGAAGTATTCTAGCTGCATACTTAAATTTAA CATAATTTTGGAGGATCTCGACAAGCAATACAATGATAGTAGATACACCA GATCGATTGCCTGTCAAAAACTGTTTTCGAATCTTGACAGTTCTGAAGCA ACTGTATCCTGTAAATTGTTTATTCGACGTTTCGTCACGACATTTATAGT ATATGTATTCAAGAGAGTTTTTTTTACAAATTGACCTTTTCAACTGATTA TGACACTTCATTGATAAACACCATCCTATTATGTCCCCCAGTGTTGTAAT CCTACGCAACTTCGTGAATAACCAGCTATTCGTTCATCAGAAAAAGAAAA AAGAACAGCGGCTGCTAAGATAAAATCAATCCAGGCTACTTTAGAACTTT TGACAAGCTGAGTTCCAAGCTACGCGTTTTTTATAAGATCGTCCATCCTT CGAACGTGTAGTCGGTTTTAATTTTTGCCCAATTTTTGCTTGGTAAAGAT AAGCTATAAAATGTCATTGAAACTTGAGATATGTTTTCACCCGCGCGACC TTTTTGAGTTGTTTATGAGGAGTGAAAGAAATGAAAGATGATTCCAACGC TAACATTTACAATGGTACAATTTGATACCAAACGAGACTAAAACCTCTTA ACTTAAATATGAAGACCGTTTATTTTTATATGATAGCTTTGCTAAATTTT ACATTACAACCAACAGGAAAGGATTTGAAATTTAAGATAAAAAGAAGAAT CATATTTCATAGGATTTCTCCAGGATCAACTAAACCGATAACATCACATC TTTATTTTTAGGTATCCCAGATGCTCCAGCCCTCCTCAATACAGAAGATA TCGGCAAACATCACATCACGTTGTTATGGTTACTAGACAAAGCTAACGGT CAAATCAAGTCCATTTTTATCGAGAAACGACAAATCGGTCAAAAAGAATG GGACCGAGTGGAGGTACACAAAGCCATTACCAAATACACTTTCAGTAATC TAGATGAAGATACGTTGTTTGAATTTCGGCTAAGAGCAACGAACGTGGTC GGAACAAGCGCGTACAGTGAAATACAAAAACTGAGAACTAATAAAACTCC TATCGTTGGTAAGTTATCTAATACCCCATACACAACTTCAATTTCGGCTT CAAACCAGAGTATCTTGATTTTTGGGCTATTTTGAGGCCTCAAAACCTTA CTCAGTTGATTAACAAAACAAAAATGCGAACCTTTAAAATGCACTACTGT TTCCCAGCTACAGGAGAAATCTGTTAGCTGTTAAGAAATAAGGTGGACTT GGAGAGAATATATACAGATCTTAAGATTTACGACGTAGTGTTTAGCGGTC GTAGCATGAAGGTAGAGCATCCAGCTATGGCGCGCAAGGTTGTGGGTCCG ATCCCCAGCCGGGTCATACCAAAGATTCCTAAAATGGTACTTGATGCCTC TCTGCTTGATACTCAGCAACTAAAGAGACGGATCAAGGGTAAGTGGAGAA ATTCAGGGAAAGGAGTGGTGCCCTCCCCTACCTTTGGGTAAACAGCTAGA GCTCGGGTAAATTAATGCGTGTCCAAATTTTCGTTATTTTTCCGGAGGCA GTTCCACCCCTCCTAGCATAATAAATTATACCTTTAAAGAAGCGCATTAC GATGTAGAACATTAAAATCGGTGTTACTTAAATTTAGTTTTTGCCAATTT TGCGAAAAATCTGACGTCAGCAAAACTTGATTTTTAAATAACTCCAATTT GGCTAATGGTATGAACATGAAATCTAGAGCAAAGTTGCACATCATTAAAA GTATCATTTTTAAACAAAAGTTTTTTGAAATTTTGCTGATGTCAGCACTT TATTGCAAATTTTCGTATTTTGCTGATTTCTGCTGACGTCAGCAAAATTT GACAAAAAGGATTATGCAAAAATGTTTTTATTAATGATATGCAACTTTGG TCCAAATTTCATGTTTATACCATTAGCCAAACTAGAGTTATTTAAAAAAC AAATTTTGCTGACGTTCCCTCCTTTCCACGCATTAATTTACCCAAGAGAA AAGGAAGCCTTTGGGTCGCCCTCGACTGTGGTCATAGGCTAAAAAAAAGA TTACGGCTGTTTAAAATCATTTTTCGTTTTTATGAATCATGTGATAATAA TTGTTTTCATTCTTTTTCAGCCAAAAGCAGTAAGAAAGATACACCAAAAG AAGAATCAAAAACAAAGAACATTATTTTTGGTCTTGACATTATTGCATTG ACAGCCATTGGTGGCGGAATACTCATCCTGATTACGTGCGTCTGTGCAGT GGGAATCATTGTAGTGCAACGGAAGAAATTTCGTTCTCAGAAAAAGAGAA AAAGTACTGAAAAGAAAACACTAATTCAAATGAACAGACCGGCAAGTAGA ACATCGGTATGAAGGAAAGGGAGTATGAGATATCAAATGGGTGTCGACGG AGGAAGGTTCGACGATGGCTTGACCTTGGTTGAAATAAAAGGTCTGTGAT AAACGTCCGTGGTCCGTGAAATATATCTTTATGTATGGCGTAATTTTCAA GGTGGCTCATATCGGAGGTTCAGGTTACTTAACAAAAGAGAAAACCCAGT TTTGCATCGACTTTAAATGAGTGCTGATATGTCCAACTTTTAGAAAAAAG CAAAAAGATTGGTCAATTAGACCTTCTTTGTCCTTTTCTTGGCTAAAATG TAAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011903XLOC_011903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021270-exon-sc0000380-1575043694:184393..184586TCONS_00021270-exon-sc0000380-1575043694:184393..184586Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1575043694:183510..183854TCONS_00021270-exon-sc0000380-1575043694:183510..183854Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1575043694:182424..182475TCONS_00021270-exon-sc0000380-1575043694:182424..182475Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1575043694:182108..182355TCONS_00021270-exon-sc0000380-1575043694:182108..182355Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1575043694:180585..180911TCONS_00021270-exon-sc0000380-1575043694:180585..180911Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1575043694:179379..179675TCONS_00021270-exon-sc0000380-1575043694:179379..179675Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1575043694:177779..178316TCONS_00021270-exon-sc0000380-1575043694:177779..178316Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:184393..184586TCONS_00021270-exon-sc0000380-1510915933:184393..184586Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:183510..183854TCONS_00021270-exon-sc0000380-1510915933:183510..183854Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:182424..182475TCONS_00021270-exon-sc0000380-1510915933:182424..182475Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:182108..182355TCONS_00021270-exon-sc0000380-1510915933:182108..182355Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:180585..180911TCONS_00021270-exon-sc0000380-1510915933:180585..180911Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:179379..179675TCONS_00021270-exon-sc0000380-1510915933:179379..179675Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1510915933:177779..178316TCONS_00021270-exon-sc0000380-1510915933:177779..178316Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:184393..184586TCONS_00021270-exon-sc0000380-1491911889:184393..184586Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:183510..183854TCONS_00021270-exon-sc0000380-1491911889:183510..183854Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:182424..182475TCONS_00021270-exon-sc0000380-1491911889:182424..182475Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:182108..182355TCONS_00021270-exon-sc0000380-1491911889:182108..182355Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:180585..180911TCONS_00021270-exon-sc0000380-1491911889:180585..180911Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:179379..179675TCONS_00021270-exon-sc0000380-1491911889:179379..179675Clytia hemisphaericaexon
TCONS_00021270-exon-sc0000380-1491911889:177779..178316TCONS_00021270-exon-sc0000380-1491911889:177779..178316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:177779..184586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0593935 0.0296002 0 0.213586 20.4825 15.2831 24.0227 21.4283 8.39024 7.20703 8.26917 9.5439 6.7317 6.91393 10.4298 19.1517 16.7908 19.2872 10.4532 17.1585 8.94832 8.18377 4.42153 6.83368 6.93318 4.45289 0.784756 1.03646 26.751 45.7925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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