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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021270 ID=TCONS_00021270|Name=TCONS_00021270|organism=Clytia hemisphaerica|type=transcript|length=2001bp AATACACGTAATTTTCAAACCTCATTGACTTTATTGATATATCGTGTTCG GTTGTATAATTTCATAGTTGGTCAAGTAGTTTTTATAAACGCTTTTAACA CTATATAAGACTTGGTAACGTGTACTTTATTGAGAAAATTCGTTTGTCTA ATGGATTACTAACACAAGCTCGTAAACTTTCCTCCTTGATGTCTGACAAC ACAAAGTCAAAGTTTATGGCAAAGAAGGTGTACCGCTGACATTGCAATGC AAGAATAATACCGCGGGTCGATTCCAATCAGTAATATGGACAACAAACGC ATATTCAAACTACAAATACACAGCATTCAGTTACAATCATCTTGGAGAaa tgaaaattcataaaaactTTCGCAATAGGATTCACAGAGCTAGTGGTACC TCTATCCAGTTATTGAACAGCAAATTGACCGATACTGGGAATTGGGAATG CGATATCATTTTCACGTATAGGAAAGGAAATGAAATCAAAGAACGAAAAC GAGTCAAGACATTAGCTAATTATGATGTCATCATTGTCAGTCCACCAACA ATCAAGCATGTGTACCCACTCTCAGTCTCTGCACCACTAACATACAAAAA AGAAGCAATCTGTGAAGCCTACAGTCCGAACCCTTTTACTTTAACATGGA TCAAAATCCACGGCAATTTCACCAAAGACACTGTCATGGATATTCAGGAG AACTTTGCAAATAACCAATACAAGAAGAGGAATATCATAACATTTAATAG TTTGTCTGTAAATGATATCGGACAGTATCTATGtgttgcaaaaaatattg ccgGACAGGTGTCAAGAGAAGTGGAGGTCAATGTTGAAGCAAAACCAATG ATGCTTGTACCCAAACCTCGAGTCCATGTCAACATTGGACAAAGCGTTGA GCTGAAATGCGTTGCTATGGGTTACCCTAAAGTCTCCTTCGAATGGTTAT TTACTCACAACTACGAACAAATCCAACTCATCCCCACTACGAAGAAGGGT GATTTTTCTGTTTCCCGAACACGTTTTCAATACTATGATGGCAAAGAACG CTCCACCTCGGTGttgagaattgaaaatgttactCCAAAGCATTGGGGAA CGTATCGATGTCAAGCAGAAAATAAGATTGGTTATGCAGAAGCTAAATTC ACTATCGAAGGCCATAGTATCCCAGATGCTCCAGCCCTCCTCAATACAGA AGATATCGGCAAACATCACATCACGTTGTTATGGTTACTAGACAAAGCTA ACGGTCAAATCAAGTCCATTTTTATCGAGAAACGACAAATCGGTCAAAAA GAATGGGACCGAGTGGAGGTACACAAAGCCATTACCAAATACACTTTCAG TAATCTAGATGAAGATACGTTGTTTGAATTTCGGCTAAGAGCAACGAACG TGGTCGGAACAAGCGCGTACAGTGAAATACAAAAACTGAGAACTAATAAA ACTCCTATCGTTGcCAAAAGCAGTAAGAAAGATACACCAAAAGAAGAATC AAAAACAAAGAACATTATTTTTGGTCTTGACATTATTGCATTGACAGCCA TTGGTGGCGGAATACTCATCCTGATTACGTGCGTCTGTGCAGTGGGAATC ATTGTAGTGCAACGGAAGAAATTTCGTTCtcagaaaaagagaaaaagtac tGAAAAGAAAACACTAATTCAAATGAACAGACCGGCAAGTAGAACATCGG TATGAAGGAAAGGGAGTATGAGATATCAAATGGGTGTCGACGGAGGAAGG TTCGACGATGGCTTGACCTTGGTTGAAATAAAAGGTCTGTGATAAACGTC CGTGGTCCGTGAAATATATCTTTATGTATGGCGTAATTTTCAAGGTGGCT CATATCGGAGGTTCAGGttacttaacaaaagagaaaacCCAGTTTTGCAT CGACTTTAAATGAGTGCTGATATGTCCAACttttagaaaaaagcaaaaag attgGTCAATTAGACCTTCTTTGTCCTTTTCTTGGCtaaaatgtaaagaa a Run BLAST on NCBI transcript from alignment at sc0000380:177779..184586- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021270 ID=TCONS_00021270|Name=TCONS_00021270|organism=Clytia hemisphaerica|type=transcript|length=6808bp|location=Sequence derived from alignment at sc0000380:177779..184586- (Clytia hemisphaerica) AATACACGTAATTTTCAAACCTCATTGACTTTATTGATATATCGTGTTCG
GTTGTATAATTTCATAGTTGGTCAAGTAGTTTTTATAAACGCTTTTAACA
CTATATAAGACTTGGTAACGTGTACTTTATTGAGAAAATTCGTTTGTCTA
ATGGATTACTAACACAAGCTCGTAAACTTTCCTCCTTGATGTCTGTAACA
ATCTAAGTACTGCTACAAATTTTTGACTTGATTACGTTATCGTTTATCAA
GATAAAGATTTCAAACATCAAGAATATTTTGGCTTTCGAAAATATGGATA
TTTCTATTAGAAGTTACTTTTTGTTAACGATCTGTTGCATTTCGCTGATT
TCAGGATCCAGTAAGTATCATTTTGTTCATGAATTTAATTTAAATTTTTA
AGATTAAATATAAATGCTAATATGAAAGAAGCTTTCCAATGGAAAAATCT
GGAAATATCTTTAAAAATGCAATAATACTGTAAAACAGATGATTCTAAAA
TTATAGTATCTTTCCGAATTTTATTTCTCGTTTTTTGGGGGCCTTTATTC
GTTATTCGTTATTCGTTATTCGTTACTCCACACTTCTTCTCCATAAGAAA
GATACCCTGAAATTGATCACTACTTGGAAACTAATGACCTCTCAGACCTA
GACCGAAGGATGACTGACGATGGTGAAAAAAGTTCTCATCTCTCTGTAAA
AGCTTTTAAAAATCATATATTGTTCTTCATAGGACAACACAAAGTCAAAG
TTTATGGCAAAGAAGGTGTACCGCTGACATTGCAATGCAAGAATAATACC
GCGGGTCGATTCCAATCAGTAATATGGACAACAAACGCATATTCAAACTA
CAAATACACAGCATTCAGTTACAATCATCTTGGAGAAATGAAAATTCATA
AAAACTTTCGCAATAGGATTCACAGAGCTAGTGGTACCTCTATCCAGTTA
TTGAACAGCAAATTGACCGATACTGGGAATTGGGAATGCGATATCATTTT
CACGTATAGGAAAGGAAATGAAATCAAAGAACGAAAACGAGTCAAGACAT
TAGCTAATTATGATGTCATCATTGTCAGTAAGTTCAATTTAAGTCCAGTC
CACCGGTCAATATTTAATTCTCATAGTTCTTATATGACTAGCATACAGCA
CCCGAGTATCAATCTATTGAAGCAAGGTCGGCATTCATAATTTTGTGAAG
GGACAAAAACTTAAAATAAGAACAACCGAAGCACAGCTAAAAATTACTGC
TCCTTATAGAAATTCCTTAGTTTTTTTGTTTGTCACATATTTTTTTTTTA
ACTTCCAAACAATTTATTGGAGGATTTTACGACAACAATTTTGTGTTTTC
ATTTCGTTGAGTGGTAATTCTGTTTCCTGGACGAAAAATATTTCTGCTTG
TTTGTAGCAATATTTTGACAGAAGACACCTTTTTACCACATACCATCAAA
ATCATCTTTTGAACGTACAAAATACGTCTCGGGCAACTATTTCTATATCT
GGTAGAAGAGCACTTAGCACATTAATGACACTCGACATTCATCAAAGGGT
TCTTTATTAGCGAATATCGCGAACTTTGATAACGGTTATATCTTAAATCC
TACTTACGATTTCATCCAAAAAATACACATTACTGTAAAGCTAGCTTTTC
ATGCTATTCTTTTTATACGTCACATATTCACATTTAAAAGAGCATCTACA
AATGCAAGGAGACTTATCTTGAAGAAAAAGTCACGTCTTTGTAAAAAGCC
CTTCTATATTCCCACTGTCATAGCGAGTACTTGTGTTTTTCTGCAACGCA
GCCGGTTTTTTATTTTTGTAGACCCTTACTGAGAACGACAGTGAATCAGT
ACTTTTGCCGTCCTTGATTTTGCGGGCCAAAGCTGCGATTTGTTCAAAAC
CGTCTAAGTCACTTCGCCTTATCTTCAGATACATAACTTCACTAGAAGAC
ATTAGCGTAACGTACAATGCAGTCTTTCTTCCAATAAGAGTCAGTAAATT
TTGACTCAGTCTTCCCTGTTCTATTTTTTTCTAATTTTTTTAAGTTTTTC
CAATGAATAAATTGTTCATATTTCTATTTTTATCTTCTACCCGTTAAATT
CTACTTTTCAGGTCCACCAACAATCAAGCATGTGTACCCACTCTCAGTCT
CTGCACCACTAACATACAAAAAAGNTCAGGTCCACCAACAATCAAGCATG
TGTACCCACTCTCAGTCTCTGCACCATTAACATACAAAAAAGAAGCAATC
TGTGAAGCCTACAGTCCGAACCCTTTTACTTTAACATGGATCAAAATCCA
CGGCAATTTCACCAAAGACACTGTCATGGATATTCAGGAGAACTTTGCAA
ATAACCAATACAAGAAGAGGAATATCATAACATTTAATAGTTTGTCTGTA
AATGATATCGGACAGTATCTATGTGTTGCAAAAAATATTGCCGGACAGGT
GTCAAGAGAAGTGGAGGTCAATGTTGAAGGTAAGAGTATTTCCAGTTTCA
ACTCGAAATTAAATTTTCAACCTTTTCAACTGACAAATTCGAATCTTCAT
GGATAGTCTATTTCTCAGTGCAAGGCTAAGATCAGCTTTAGGTGAAATTT
CTGGTAGCAAAATAACTTCAAAAAAGGGAACGTGTTTATCCATGGCTGTA
ATCTTAAATTGATTTGCGATATTTACAAATTTTCCTATTAATACACCCCT
TTCTCACAGACCCGTGGAGGTAAAAGTAACGGACTGAAACTCGATTGGGA
TTGTTATTCCCATATTTTTTATGGCTGAGGATTTAAATTCTTTTGTTTTC
AAGTCAGAAAACTCAGTGGGGATTAGAAAAAAAGCATAATTTTTTGAAGT
GAAGATTGGTTTATTTGATTATTTTCAGTGGCGACAAAAATGGGACGATA
ATTTTCCACCCGGGGACGATATTTTTCCAGTGGGAAGGGTTCCCAGTGGG
TCTGTGAGAAGGGGATGTTTTAAATGGCTTCTTTTGATAAAATTATATTT
TTCTTTGCTTTCAAAAGGTTTGCACGCGACAAACCTCGTGTCAGATGCCA
CAAATGGCCTCCCTAAACTTGTTTTGAAAGTCATTTTGTCACAGAAACAA
TAACAAAGATGCTTTAAAGAAAATACCTACAAAAAGCATTGCTAAAATTC
AGAAAACAGAAATTTCCTTGCCTTGAGACATACCCTGAATTTGCGATGGA
CAAATTACTCAAAAGCTGATCCCAAGCTGATGTACGAGATTTTAATTTAT
TTCTGATAAAATTCCCTTGAGAACGGACCGAGTCCGAAACATGTCGGGAA
AAATCAAAATATAGTAGCCGCATTCTTTTTCACCGTTCAACAATTTATTT
CTGATATATTTCTGGCTTATTCCAAATTTTTTCTTGATTTGTGATTCATT
TTGATTGATTTTTGATTCGTGAAAAAGGTGTTCGAGATTTATACTTTGTG
ATTTACGAAGGAGGTAAATTCCAGGTGAAATTCCATCCTATCGGAAAACG
ATACTGAATTTCAATACCGACCAGAAACAGGTTTTAAGAACTCCAAGTGT
ATATTTGATTTCTAAATCGACATTGATAAGACTAGATTATGCTCTTTAAC
TCTTGCTTCAAGACTTCTTCTAATAGCATATTACTAATATCAGTGATCAA
AAAGATTTTGAAATTTCCTTTTCAGCAAAACCAATGATGCTTGTACCCAA
ACCTCGAGTCCATGTCAACATTGGACAAAGCGTTGAGCTGAAATGCGTTG
CTATGGGTTACCCTAAAGTCTCCTTCGAATGGTTATTTACTCACAACTAC
GAACAAATCCAACTCATCCCCACTACGAAGAAGGGTGATTTTTCTGTTTC
CCGAACACGTTTTCAATACTATGATGGCAAAGAACGCTCCACCTCGGTGT
TGAGAATTGAAAATGTTACTCCAAAGCATTGGGGAACGTATCGATGTCAA
GCAGAAAATAAGATTGGTTATGCAGAAGCTAAATTCACTATCGAAGGCCA
TAGTAAGTTGGTTTTCGTTTCCAAAACTATGTCTAAAATCATTTAAAGTC
GCTTTTTTATAGAATCTTCGATTCTCGATTTTGTCAACTTTGTTCTTTTT
TTAAAAATGTACACGAGAAGGAAGTATTCTAGCTGCATACTTAAATTTAA
CATAATTTTGGAGGATCTCGACAAGCAATACAATGATAGTAGATACACCA
GATCGATTGCCTGTCAAAAACTGTTTTCGAATCTTGACAGTTCTGAAGCA
ACTGTATCCTGTAAATTGTTTATTCGACGTTTCGTCACGACATTTATAGT
ATATGTATTCAAGAGAGTTTTTTTTACAAATTGACCTTTTCAACTGATTA
TGACACTTCATTGATAAACACCATCCTATTATGTCCCCCAGTGTTGTAAT
CCTACGCAACTTCGTGAATAACCAGCTATTCGTTCATCAGAAAAAGAAAA
AAGAACAGCGGCTGCTAAGATAAAATCAATCCAGGCTACTTTAGAACTTT
TGACAAGCTGAGTTCCAAGCTACGCGTTTTTTATAAGATCGTCCATCCTT
CGAACGTGTAGTCGGTTTTAATTTTTGCCCAATTTTTGCTTGGTAAAGAT
AAGCTATAAAATGTCATTGAAACTTGAGATATGTTTTCACCCGCGCGACC
TTTTTGAGTTGTTTATGAGGAGTGAAAGAAATGAAAGATGATTCCAACGC
TAACATTTACAATGGTACAATTTGATACCAAACGAGACTAAAACCTCTTA
ACTTAAATATGAAGACCGTTTATTTTTATATGATAGCTTTGCTAAATTTT
ACATTACAACCAACAGGAAAGGATTTGAAATTTAAGATAAAAAGAAGAAT
CATATTTCATAGGATTTCTCCAGGATCAACTAAACCGATAACATCACATC
TTTATTTTTAGGTATCCCAGATGCTCCAGCCCTCCTCAATACAGAAGATA
TCGGCAAACATCACATCACGTTGTTATGGTTACTAGACAAAGCTAACGGT
CAAATCAAGTCCATTTTTATCGAGAAACGACAAATCGGTCAAAAAGAATG
GGACCGAGTGGAGGTACACAAAGCCATTACCAAATACACTTTCAGTAATC
TAGATGAAGATACGTTGTTTGAATTTCGGCTAAGAGCAACGAACGTGGTC
GGAACAAGCGCGTACAGTGAAATACAAAAACTGAGAACTAATAAAACTCC
TATCGTTGGTAAGTTATCTAATACCCCATACACAACTTCAATTTCGGCTT
CAAACCAGAGTATCTTGATTTTTGGGCTATTTTGAGGCCTCAAAACCTTA
CTCAGTTGATTAACAAAACAAAAATGCGAACCTTTAAAATGCACTACTGT
TTCCCAGCTACAGGAGAAATCTGTTAGCTGTTAAGAAATAAGGTGGACTT
GGAGAGAATATATACAGATCTTAAGATTTACGACGTAGTGTTTAGCGGTC
GTAGCATGAAGGTAGAGCATCCAGCTATGGCGCGCAAGGTTGTGGGTCCG
ATCCCCAGCCGGGTCATACCAAAGATTCCTAAAATGGTACTTGATGCCTC
TCTGCTTGATACTCAGCAACTAAAGAGACGGATCAAGGGTAAGTGGAGAA
ATTCAGGGAAAGGAGTGGTGCCCTCCCCTACCTTTGGGTAAACAGCTAGA
GCTCGGGTAAATTAATGCGTGTCCAAATTTTCGTTATTTTTCCGGAGGCA
GTTCCACCCCTCCTAGCATAATAAATTATACCTTTAAAGAAGCGCATTAC
GATGTAGAACATTAAAATCGGTGTTACTTAAATTTAGTTTTTGCCAATTT
TGCGAAAAATCTGACGTCAGCAAAACTTGATTTTTAAATAACTCCAATTT
GGCTAATGGTATGAACATGAAATCTAGAGCAAAGTTGCACATCATTAAAA
GTATCATTTTTAAACAAAAGTTTTTTGAAATTTTGCTGATGTCAGCACTT
TATTGCAAATTTTCGTATTTTGCTGATTTCTGCTGACGTCAGCAAAATTT
GACAAAAAGGATTATGCAAAAATGTTTTTATTAATGATATGCAACTTTGG
TCCAAATTTCATGTTTATACCATTAGCCAAACTAGAGTTATTTAAAAAAC
AAATTTTGCTGACGTTCCCTCCTTTCCACGCATTAATTTACCCAAGAGAA
AAGGAAGCCTTTGGGTCGCCCTCGACTGTGGTCATAGGCTAAAAAAAAGA
TTACGGCTGTTTAAAATCATTTTTCGTTTTTATGAATCATGTGATAATAA
TTGTTTTCATTCTTTTTCAGCCAAAAGCAGTAAGAAAGATACACCAAAAG
AAGAATCAAAAACAAAGAACATTATTTTTGGTCTTGACATTATTGCATTG
ACAGCCATTGGTGGCGGAATACTCATCCTGATTACGTGCGTCTGTGCAGT
GGGAATCATTGTAGTGCAACGGAAGAAATTTCGTTCTCAGAAAAAGAGAA
AAAGTACTGAAAAGAAAACACTAATTCAAATGAACAGACCGGCAAGTAGA
ACATCGGTATGAAGGAAAGGGAGTATGAGATATCAAATGGGTGTCGACGG
AGGAAGGTTCGACGATGGCTTGACCTTGGTTGAAATAAAAGGTCTGTGAT
AAACGTCCGTGGTCCGTGAAATATATCTTTATGTATGGCGTAATTTTCAA
GGTGGCTCATATCGGAGGTTCAGGTTACTTAACAAAAGAGAAAACCCAGT
TTTGCATCGACTTTAAATGAGTGCTGATATGTCCAACTTTTAGAAAAAAG
CAAAAAGATTGGTCAATTAGACCTTCTTTGTCCTTTTCTTGGCTAAAATG
TAAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00021270-exon-sc0000380-1575043694:184393..184586 | TCONS_00021270-exon-sc0000380-1575043694:184393..184586 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1575043694:183510..183854 | TCONS_00021270-exon-sc0000380-1575043694:183510..183854 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1575043694:182424..182475 | TCONS_00021270-exon-sc0000380-1575043694:182424..182475 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1575043694:182108..182355 | TCONS_00021270-exon-sc0000380-1575043694:182108..182355 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1575043694:180585..180911 | TCONS_00021270-exon-sc0000380-1575043694:180585..180911 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1575043694:179379..179675 | TCONS_00021270-exon-sc0000380-1575043694:179379..179675 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1575043694:177779..178316 | TCONS_00021270-exon-sc0000380-1575043694:177779..178316 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:184393..184586 | TCONS_00021270-exon-sc0000380-1510915933:184393..184586 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:183510..183854 | TCONS_00021270-exon-sc0000380-1510915933:183510..183854 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:182424..182475 | TCONS_00021270-exon-sc0000380-1510915933:182424..182475 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:182108..182355 | TCONS_00021270-exon-sc0000380-1510915933:182108..182355 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:180585..180911 | TCONS_00021270-exon-sc0000380-1510915933:180585..180911 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:179379..179675 | TCONS_00021270-exon-sc0000380-1510915933:179379..179675 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1510915933:177779..178316 | TCONS_00021270-exon-sc0000380-1510915933:177779..178316 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:184393..184586 | TCONS_00021270-exon-sc0000380-1491911889:184393..184586 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:183510..183854 | TCONS_00021270-exon-sc0000380-1491911889:183510..183854 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:182424..182475 | TCONS_00021270-exon-sc0000380-1491911889:182424..182475 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:182108..182355 | TCONS_00021270-exon-sc0000380-1491911889:182108..182355 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:180585..180911 | TCONS_00021270-exon-sc0000380-1491911889:180585..180911 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:179379..179675 | TCONS_00021270-exon-sc0000380-1491911889:179379..179675 | Clytia hemisphaerica | exon |
TCONS_00021270-exon-sc0000380-1491911889:177779..178316 | TCONS_00021270-exon-sc0000380-1491911889:177779..178316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000380 | supercontig | sc0000380:177779..184586 - |
Blast
The following BLAST results are available for this feature:
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