TCONS_00021266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021266
Unique NameTCONS_00021266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021266 ID=TCONS_00021266|Name=TCONS_00021266|organism=Clytia hemisphaerica|type=transcript|length=2135bp
AGTTGAATGTATTGGATTAAATACTTGGACAACCTAATTATTCAAACTCA
TTctcaataaaataaaactttaggTGTTTACTgtaattagaaaaaataag
atttgatcAGAATCTTAACGATGGAAGCAATATCAGAATTCTACAAATGG
GCTGAATCGATCAGTGATCCAAGAGTTGCAGATTGGTTTCTTATACCCAG
TCCCCTTCCAACTTATTCGATGTCTTTTTTCTACGTAATATTTTCATGGA
AGATTGGTCCATATCTTATGCACAACAGAGAACCcttcaatttgaaatat
ttgctgatCATTTATAATTTATCAATGGTTTACTTgaattatcatatttt
caaggaGCTCTTATTTGGAATGCTGGAAGCTGGTTATTCATACCCATGTC
AACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGATTGCCAGAGCT
CTGTGGTGGTACTTTgcatcgaagttgatcgaattCATTGACACTTTGTT
CTTCATCTTACGCAAGAAAGATAATCAGATTTCATTTTTGCACGTTTACC
ATCATGCCACAATGCCCATGTTATGGTGGATTGGCACCAAATGGGTTCCT
GCTGGACAGTGTGAGTATATTCTTCATCCGGCTCTTCTGCACCCGCTGCC
ATCCTGAATGCATTCATCCATATTATTATGTATTTTTATTACGGGGTGGC
TGCTTTTGGTCCTTCGCTTCAAAAATACCTCTGGTGGAAGAGATACCTTA
CACAAATGCAACTGATTCAATTTTGTATAGCATTGGGAACGGCAACGTAT
TCTTTGTACAGTGGCTGTGATTTCCCACGTTGGATGAGCTGGGCGTTGAT
CCTCTATATGATCTCTTTCCTCGTTTTGTTCGGTAACTTTTACATTCAAG
CATActtaacaaaaaagaaaaagaaaaatgacgaACTCAGAAATGGCGAA
ATGAAGACTTCTGTTAAAGGAACGAGTAGAGACAATAATGGAGAATTAAG
ATCTAGGAACAAAATCTCATCCTAATTTATAATTATATTTAcagttcgag
ttatagagtaaggtttataaggcattgatAACTGAAGGGATgggaaaact
ttttcgagtaaagaGAACATTCTTGAGTGTAGGAAACATTCGTGTTGTAT
AGGTGCAGAATTGAATGAATTTGTGCTTGCGCGACGCAGGATGCAGAGAA
AGTTgtttactttaatcggattaacttttgcgagattaaatttcgcgatt
tcgcgtatttttgccattttcgcgaagttaaaactcgcgaaaacgcgtga
gattcctgactcgcgaaattaaatccaccacaaatttttttaaatcgcat
TTTCGGCGGAGAAACTAGTCCAAAGTCTCCATAtgtggcaaaaaaaaatt
tcagcatgACAATAAGTCAGTTTTCACCTcgaatttgacttttttttgat
aattttttctattttaatgattttttataagattttttgattttttaagc
aTAACCGTAggtttcaaaggaagaaattttagcggcCATCCAATTCTTGA
AAGCTTTTTGCTGAGAATTTAATCTGACAAATAGATTGGTGGGAGAATTT
CGCCAATCTTCTTCCTTTAAAAcagatttttggacctacctggaggtcct
ataaattaacctttgtccgtccgtccgtccgttcgttcgttcgtccgtcc
ttctgttaccagcttttctcgagattggctcattacgttttttctgattt
ttggcacaatgatgcaaaatggtaatgcccaaaatgtgacggagcccgat
tttcgaaaaaaaatcatttccggccgaaaatgccggaaatgtgccggaaa
aaccggttttttggcattttctcgagatttcatcattagttttttctgaa
tttttgcacaaagatgcgtattagcaatgcccaaaacttggccgagtccg
atttttgagaaaaaatcttttccggtcgaaaatgccggaaatatgccgga
aatcgccgtttttgcagtttttcattgggcttttcccttataattggtta
ttttttcattcaaaaacattattaatagcaatgcccaccatcaagcatgt
ttcaattttcaataaaattgatttttgaagccgga
Run BLAST on NCBI

transcript from alignment at sc0000380:294922..298684+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021266 ID=TCONS_00021266|Name=TCONS_00021266|organism=Clytia hemisphaerica|type=transcript|length=3763bp|location=Sequence derived from alignment at sc0000380:294922..298684+ (Clytia hemisphaerica)
AGTTGAATGTATTGGATTAAATACTTGGACAACCTAATTATTCAAACTCA
TTctcaataaaataaaactttaggTGTTTACTgtaattagaaaaaataag
atttgatcAGAATCTTAACGATGGAAGCAATATCAGAATTCTACAAATGG
GCTGAATCGATCAGTGGTAAGTTCAGGGAAAGATAACGGTGTTAATAATA
ATAGTATAGAGAcattatttctttaaatctaTCAATAACTTATTTTTGTT
CCAAAGCTTTAATCAGGGTAAATACCATAACTACGTGTGATGCtgacata
ccttgtctaattctatcatagcaactatctggtctttaaactgtttataa
ataaaacctTCTAAATAAGCTGGtttaaaaaattagttttaCTACTTGTA
ActactttgcagaccagatagttgctatggcGAAATTATTTATACTGTTT
TCTTTATGATTTCTTTTAGATCCAAGAGTTGCAGATTGGTTTCTTATACC
CAGTCCCCTTCCAACTTATTCGATGTCTTTTTTCTACGTAATATTTTCAT
GGAAGATTGGTCCATATCTTATGCACAACAGAGAACCcttcaatttgaaa
tatttgctgatCATTTATAATTTATCAATGGTTTACTTgaattatcatat
tttcaaggaGGTTGGTACTATGTGTTCACAAATTGAAAATCAAGATAGAC
TAGTATATATCTATCCTCATAAGAATCATTTACAACTAAGAGTAACACTT
TATTTTGACTGTAGAATCCTCACTCTTTGATCATCAAAAGTAGCTTTTTT
CAAATGCATCCATTcggaaaattaaaattaaaattttagctAAAGTTTTT
AGGAAAAGTGCTGAAAAGTGTTAAAATCATGATATTGAAATTTCTATTTA
AAAGCTCTTATTTGGAATGCTGGAAGCTGGTTATTCATACCCATGTCAAC
CCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGGTAAGCTTTGTTTGT
GAAATGAATCTGGAATGAACCGTTTGCTTGATCtgctcttttgaaaaaaa
atatgcgTCTGCCAAGATTTTGACATGTCAGCATTTATAAATTGTATTAT
ATAAAGCTTTTGTTGAACTTTCAATTATATGTTTTAAAATAAGAGCCACA
ATTTATTGATCATTTCTAAACGGAATAGACACAGAGATGTGAATTGTGAA
TTATGTTATATCCACCTTTTGAGCTTTTATCATAAATTGGGATCAATTTT
AGATTCATTAGAAATTACTGGCACTTGCATTCAACTTTATCACGGTAGTG
TCTATTGCTTATTGGTTAATTCTTccgtttatttatttataaattcAACA
GATTGCCAGAGCTCTGTGGTGGTACTTTgcatcgaagttgatcgaattCA
TTGACACTGTAAGTTAAATGATTTCTTCATTCCTATTTTCGTTAGCAGTt
ttatttgaatgaaaaattacaattttttaaGTTACCAATTAAAAATCTTT
ACACTATTTCTTTCTAGATGAAAATATGAGAATTGTGTGTAAACTCGTTT
AGTCGAAGGTCAAGGCTATCATGCATTTACCATCTGCCTTTCACTTTACA
GTTGTTCTTCATCTTACGCAAGAAAGATAATCAGATTTCATTTTTGCACG
TTTACCATCATGCCACAATGCCCATGTTATGGTGGATTGGCACCAAATGG
GTTCCTGCTGGACAGTGTGAGTATATTCTTCATCCGGCTCTTGTAAAACC
GTTTTTCAGTTTTATCGCTTCTCGAACTTCTACAAATTTAAAACACGTTC
TATATGAACTAGGTGTAGAAAGCAATAAACTTTTGAGATTTTCCGTGcca
ctttttatttcaaaattgaaacattAGCATTAATctcttcttcatttaaa
aaattaagaactgTTGGCTGTACAGCTAAACTTCCTTACGATTAAAACAC
TTTTCGATTTTAGCTGCACCCGCTGCCATCCTGAATGCATTCATCCATAT
TATTATGTATTTTTATTACGGGGTGGCTGCTTTTGGTCCTTCGCTTCAAA
AATACCTCTGGTGGAAGAGATACCTTACACAAATGCAACTGGTAGGTTAT
TATAATATCTCTAAGTAGAAAAAGGTCTGCTTTTATTATGATTATCAATT
TAGCCTCAGAGTTAGCCTGTGCTCGTTGTGATTCTATTCATATTTGGTAT
ACATGTGAAGAAATCAAGAATTTCTGTCTAACTATCTTCTtccaggagat
ttgggtggcagagcagcattatgcatttcgtccttgtTGGGACTCATCAG
CACTGCGTACTGCTATATTTACTGCGTACTATATATTAAAAAATGCCAAT
TTCTAAGGATCTTCAATaagagaatttctttttcatttccagATTCAATT
TTGTATAGCATTGGGAACGGCAACGTATTCTTTGTACAGTGGCTGTGATT
TCCCACGTTGGATGAGCTGGGCGTTGATCCTCTATATGATCTCTTTCCTC
GTTTTGTTCGGTAACTTTTACATTCAAGCATActtaacaaaaaagaaaaa
gaaaaatgacgaACTCAGAAATGGCGAAATGAAGACTTCTGTTAAAGGAA
CGAGTAGAGACAATAATGGAGAATTAAGATCTAGGAACAAAATCTCATCC
TAATTTATAATTATATTTAcagttcgagttatagagtaaggtttataagg
cattgatAACTGAAGGGATgggaaaactttttcgagtaaagaGAACATTC
TTGAGTGTAGGAAACATTCGTGTTGTATAGGTGCAGAATTGAATGAATTT
GTGCTTGCGCGACGCAGGATGCAGAGAAAGTTgtttactttaatcggatt
aacttttgcgagattaaatttcgcgatttcgcgtatttttgccattttcg
cgaagttaaaactcgcgaaaacgcgtgagattcctgactcgcgaaattaa
atccaccacaaatttttttaaatcgcatTTTCGGCGGAGAAACTAGTCCA
AAGTCTCCATAtgtggcaaaaaaaaatttcagcatgACAATAAGTCAGTT
TTCACCTcgaatttgacttttttttgataattttttctattttaatgatt
ttttataagattttttgattttttaagcaTAACCGTAggtttcaaaggaa
gaaattttagcggcCATCCAATTCTTGAAAGCTTTTTGCTGAGAATTTAA
TCTGACAAATAGATTGGTGGGAGAATTTCGCCAATCTTCTTCCTTTAAAA
cagatttttggacctacctggaggtcctataaattaacctttgtccgtcc
gtccgtccgttcgttcgttcgtccgtccttctgttaccagcttttctcga
gattggctcattacgttttttctgatttttggcacaatgatgcaaaatgg
taatgcccaaaatgtgacggagcccgattttcgaaaaaaaatcatttccg
gccgaaaatgccggaaatgtgccggaaaaaccggttttttggcattttct
cgagatttcatcattagttttttctgaatttttgcacaaagatgcgtatt
agcaatgcccaaaacttggccgagtccgatttttgagaaaaaatcttttc
cggtcgaaaatgccggaaatatgccggaaatcgccgtttttgcagttttt
cattgggcttttcccttataattggttattttttcattcaaaaacattat
taatagcaatgcccaccatcaagcatgtttcaattttcaataaaattgat
ttttgaagccgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011901XLOC_011901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021266-exon-sc0000380-1491911889:294922..295087TCONS_00021266-exon-sc0000380-1491911889:294922..295087Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:294922..295087TCONS_00021266-exon-sc0000380-1510915933:294922..295087Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:294922..295087TCONS_00021266-exon-sc0000380-1575043694:294922..295087Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1491911889:295391..295581TCONS_00021266-exon-sc0000380-1491911889:295391..295581Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:295391..295581TCONS_00021266-exon-sc0000380-1510915933:295391..295581Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:295391..295581TCONS_00021266-exon-sc0000380-1575043694:295391..295581Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1491911889:295826..295906TCONS_00021266-exon-sc0000380-1491911889:295826..295906Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:295826..295906TCONS_00021266-exon-sc0000380-1510915933:295826..295906Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:295826..295906TCONS_00021266-exon-sc0000380-1575043694:295826..295906Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1491911889:296273..296329TCONS_00021266-exon-sc0000380-1491911889:296273..296329Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:296273..296329TCONS_00021266-exon-sc0000380-1510915933:296273..296329Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:296273..296329TCONS_00021266-exon-sc0000380-1575043694:296273..296329Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1491911889:296523..296663TCONS_00021266-exon-sc0000380-1491911889:296523..296663Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:296523..296663TCONS_00021266-exon-sc0000380-1510915933:296523..296663Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:296523..296663TCONS_00021266-exon-sc0000380-1575043694:296523..296663Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1491911889:296885..297012TCONS_00021266-exon-sc0000380-1491911889:296885..297012Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:296885..297012TCONS_00021266-exon-sc0000380-1510915933:296885..297012Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:296885..297012TCONS_00021266-exon-sc0000380-1575043694:296885..297012Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1491911889:297314..298684TCONS_00021266-exon-sc0000380-1491911889:297314..298684Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1510915933:297314..298684TCONS_00021266-exon-sc0000380-1510915933:297314..298684Clytia hemisphaericaexon
TCONS_00021266-exon-sc0000380-1575043694:297314..298684TCONS_00021266-exon-sc0000380-1575043694:297314..298684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:294922..298684 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0424	1.87413	8.66695	11.876	4.26664	1.34995	2.03747	5.53971e-10	2.27031	1.78731	0.913568	0.632517	1.58797	3.36127	1.47959	1.67366	2.27876	1.96512	1.76689e-08	5.09824e-09	3.08321e-09	3.8986	2.52731	2.37441	1.10866	3.58174	1.73737	1.46012e-08	3.47518	3.34173
Blast
[Close]
BLAST of TCONS_00021266 vs. Swiss-Prot (Human)
Match: ELOV4 (Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.513e-80
Identity = 92/159 (57.86%), Postives = 112/159 (70.44%), Query Frame = 1 
Query:  136 EFYKWAESISDPRVADWFLIPSPLPTYSMSFFYVIFSWKIGPYLMHNREPFNLKYLLIIYNLSMVYLNYHIFKELLFGMLEAGYSYPCQPFLTSTRPVDFRIARALWWYFASKLIEFIDTLFFILRKKDNQISFLHVYHHATMPMLWWIGTKWVPAGQC 612
            EFY+W  SI+D RV +W L+ SP PT S+S  Y++F W +GP  M +REPF ++ +LIIYN  MV LN  IF+EL  G   AGYSY CQ    S    + RIA ALWWYF SK +E++DT+FFILRKK+NQ+SFLHVYHH TM  LWWIG KWV  GQ 
Sbjct:   24 EFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQA 181

HSP 2 Score: 130.183 bits (326), Expect = 3.513e-80
Identity = 67/133 (50.38%), Postives = 86/133 (64.66%), Query Frame = 3 
Query:  618 YSSSGSSAPAAILNAFIHIIMYFYYGVAAFGPSLQKYLWWKRYLTQMQLIQFCIALGTATYSLYSGCDFPRWMSWALILYMISFLVLFGNFYIQAYLTKKKKKNDELRNGEMKTSVKGTSRDNNGELRSRNKI 1016
            + + G +   A LN+FIH+IMY YYG+ AFGP +QKYLWWKRYLT +QLIQF + +G    SLY+ C FP+WM WALI Y ISF+ LF NFYI+ Y   KK K         KT++ G S   NG  +S  ++
Sbjct:  175 WVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAG-------KTAMNGISA--NGVSKSEKQL 298
The following BLAST results are available for this feature:
BLAST of TCONS_00021266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOV43.513e-8057.86Elongation of very long chain fatty acids protein ... [more]
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