TCONS_00021248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021248
Unique NameTCONS_00021248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021248 ID=TCONS_00021248|Name=TCONS_00021248|organism=Clytia hemisphaerica|type=transcript|length=964bp
GGAGGATACTTGGAGCTCTACCTAGAAATGGTTGACCTTCTTCTTAGTAC
GATTCACTGTCAACGTACATCAAACTGGGATGGCTACTTGCAATGCATCA
AAGAGTTTCTACCCTACTGTTTCACCCACAATCGCCACAATTATGCCAGA
AATCTCACGTATTGCTATGTACATATGAAAATGCTAAAGGAAGACCATCC
TCAGCTTTATAACGAAATTTTGCTACACGGTTTTACCGTCTCACTTACTG
GACAACCATTTACAAAAATCCCTTGTGATCAAGTCATTGAAATGACAGTC
AATCGTGCATGCAAATCAACAGGCGGTCTATCCGGTAAGACAGAAAATGT
TGGCGCCAGTGAAAGATGGATGAAGATTAATCATCTTTTGGCAGCGATGA
GAGACAAACTCGACAACGTTACGCGCAGACGAAGCTTTTTCTCACATAAT
GACTACGGTCAAAAGAGATGGGAAATAGAAGAAACTGACATCCAAACAAT
GAAGCAAACGTTAAATGAGTGGGTGCCCAACTTATGGGAGAAAGATCAAC
ACATTGTGAACATCGCGACTGGTTGTTTAGCTAGCGAAGAGATGAAAAAT
AACCTGGACAGTCTACATCAAAGAGGGACCGACGCCCTTGAATCTTTCCT
TGAAAGAATAGTCGAAGGAAAAGAACAGAAAGAGCAAAAGGTGCCGTCAA
AAACGTATTACGACAAGATCACAAAAGAAAAGATCGTATCCTTCACTACA
AAGAAAGCCAAGAAAGAATTGAGTGCAATGCAGGATGAAAACGTCTCCTT
TGGTGAGATTCTCTCTCGATATGAGGGTAAAAGATTGAATCTTCGTCAGG
TTATGGATTGGCCAATTACAAGCAAGCCGTATGCAATCGCACCTGAAGAT
GGTAAAACAAGATCGAAGAACAAAAGTCTTTTCAGAAATTACCTTCAAGG
CCTCAGTCCCGAAA
Run BLAST on NCBI

protein sequence of TCONS_00021248-protein

>TCONS_00021248-protein ID=TCONS_00021248-protein|Name=TCONS_00021248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
GGYLELYLEMVDLLLSTIHCQRTSNWDGYLQCIKEFLPYCFTHNRHNYAR
NLTYCYVHMKMLKEDHPQLYNEILLHGFTVSLTGQPFTKIPCDQVIEMTV
NRACKSTGGLSGKTENVGASERWMKINHLLAAMRDKLDNVTRRRSFFSHN
DYGQKRWEIEETDIQTMKQTLNEWVPNLWEKDQHIVNIATGCLASEEMKN
NLDSLHQRGTDALESFLERIVEGKEQKEQKVPSKTYYDKITKEKIVSFTT
KKAKKELSAMQDENVSFGEILSRYEGKRLNLRQVMDWPITSKPYAIAPED
GKTRSKNKSLFRNYLQGLSPE
Run BLAST on NCBI

transcript from alignment at sc0000380:151671..152835+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021248 ID=TCONS_00021248|Name=TCONS_00021248|organism=Clytia hemisphaerica|type=transcript|length=1165bp|location=Sequence derived from alignment at sc0000380:151671..152835+ (Clytia hemisphaerica)
GGAGGATACTTGGAGCTCTACCTAGAAATGGTTGACCTTCTTCTTAGTAC
GATTCACTGTCAACGTACATCAAACTGGGATGGCTACTTGCAATGCATCA
AAGAGTTTCTACCCTACTGTTTCACCCACAATCGCCACAATTATGCCAGA
AATCTCACGTATTGCTATGTACATATGAAAATGCTAAAGGAAGACCATCC
TCAGCTTTATAACGAAATTTTGCTACACGGTTTTACCGTCTCACTTACTG
GACAACCATTTACAAAAATCCCTTGTGATCAAGTCATTGAAATGACAGTC
AATCGTGCATGCAAATCAACAGGCGGTCTATCCGGTAAGACAGAAAATGT
TGGCGCCAGTGAAAGATGGATGAAGATTAATCATCTTTTGGCAGCGATGA
GAGACAAACTCGACAACGTTACGCGCAGACGAAGCTTTTTCTCACATAAT
GACTACGGTCAAAAGAGATGGGAAATAGAAGAAACTGACATCCAAACAAT
GAAGCAAACGTTAAATGAGTGGGTGCCCAACTTATGGGAGAAAGATCAAC
ACATTGTGAACATCGCGACTGGTAAGCATGAATTTCGTATAATAAGTGAT
TCCCATTCCTAGTTTTAATTAACATTTTTATATTGGATAGTCGTAGATAC
TCGTATAGTTCTTGAAATTCGTTCACTGTTTGGAAGTTACCCAaataata
tcatgaattcctATAAAGTTACTTTCAGAGTTGACTATATCGTACCTTTT
CTTTCCTCATTCTAATTTCCAGGTTGTTTAGCTAGCGAAGAGATGAAAAA
TAACCTGGACAGTCTACATCAAAGAGGGACCGACGCCCTTGAATCTTTCC
TTGAAAGAATAGTCGAAGGAAAAGAACAGAAAGAGCAAAAGGTGCCGTCA
AAAACGTATTACGACAAGATCACAAAAGAAAAGATCGTATCCTTCACTAC
AAAGAAAGCCAAGAAAGAATTGAGTGCAATGCAGGATGAAAACGTCTCCT
TTGGTGAGATTCTCTCTCGATATGAGGGTAAAAGATTGAATCTTCGTCAG
GTTATGGATTGGCCAATTACAAGCAAGCCGTATGCAATCGCACCTGAAGA
TGGTAAAACAAGATCGAAGAACAAAAGTCTTTTCAGAAATTACCTTCAAG
GCCTCAGTCCCGAAA

Coding sequence (CDS) from alignment at sc0000380:151671..152835+

>TCONS_00021248 ID=TCONS_00021248|Name=TCONS_00021248|organism=Clytia hemisphaerica|type=CDS|length=1926bp|location=Sequence derived from alignment at sc0000380:151671..152835+ (Clytia hemisphaerica)
GGAGGATACTTGGAGCTCTACCTAGAAATGGTTGACCTTCTTCTTAGTAC
GATTCACTGTCAACGTACATCAAACTGGGATGGCTACTTGCAATGCATCA
AAGAGTTTCTACCCTACTGTTTCACCCACAATCGCCACAATTATGCCAGA
AATCTCACGTATTGCTATGTACATATGAAAATGCTAAAGGAAGACCATCC
TCAGCTTTATAACGAAATTTTGCTACACGGTTTTACCGTCTCACTTACTG
GACAACCATTTACAAAAATCCCTTGTGATCAAGTCATTGAAATGACAGTC
AATCGTGCATGCAAATCAACAGGCGGTCTATCCGGTAAGACAGAAAATGT
TGGCGCCAGTGAAAGATGGATGAAGATTAATCATCTTTTGGCAGCGATGA
GAGACAAACTCGACAACGTTACGCGCAGACGAAGCTTTTTCTCACATAAT
GACTACGGTCAAAAGAGATGGGAAATAGAAGAAACTGACATCCAAACAAT
GAAGCAAACGTTAAATGAGTGGGTGCCCAACTTATGGGAGAAAGATCAAC
ACATTGTGAACATCGCGACTGGTTGTTTAGCTAGCGAAGAGATGAAAAAT
AACCTGGACAGTCTACATCAAAGAGGGACCGACGCCCTTGAATCTTTCCT
TGAAAGAATAGTCGAAGGAAAAGAACAGAAAGAGCAAAAGGTGCCGTCAA
AAACGTATTACGACAAGATCACAAAAGAAAAGATCGTATCCTTCACTACA
AAGAAAGCCAAGAAAGAATTGAGTGCAATGCAGGATGAAAACGTCTCCTT
TGGTGAGATTCTCTCTCGATATGAGGGTAAAAGATTGAATCTTCGTCAGG
TTATGGATTGGCCAATTACAAGCAAGCCGTATGCAATCGCACCTGAAGAT
GGTAAAACAAGATCGAAGAACAAAAGTCTTTTCAGAAATTACCTTCAAGG
CCTCAGTCCCGAAGGAGGATACTTGGAGCTCTACCTAGAAATGGTTGACC
TTCTTCTTAGTACGATTCACTGTCAACGTACATCAAACTGGGATGGCTAC
TTGCAATGCATCAAAGAGTTTCTACCCTACTGTTTCACCCACAATCGCCA
CAATTATGCCAGAAATCTCACGTATTGCTATGTACATATGAAAATGCTAA
AGGAAGACCATCCTCAGCTTTATAACGAAATTTTGCTACACGGTTTTACC
GTCTCACTTACTGGACAACCATTTACAAAAATCCCTTGTGATCAAGTCAT
TGAAATGACAGTCAATCGTGCATGCAAATCAACAGGCGGTCTATCCGGTA
AGACAGAAAATGTTGGCGCCAGTGAAAGATGGATGAAGATTAATCATCTT
TTGGCAGCGATGAGAGACAAACTCGACAACGTTACGCGCAGACGAAGCTT
TTTCTCACATAATGACTACGGTCAAAAGAGATGGGAAATAGAAGAAACTG
ACATCCAAACAATGAAGCAAACGTTAAATGAGTGGGTGCCCAACTTATGG
GAGAAAGATCAACACATTGTGAACATCGCGACTGGTTGTTTAGCTAGCGA
AGAGATGAAAAATAACCTGGACAGTCTACATCAAAGAGGGACCGACGCCC
TTGAATCTTTCCTTGAAAGAATAGTCGAAGGAAAAGAACAGAAAGAGCAA
AAGGTGCCGTCAAAAACGTATTACGACAAGATCACAAAAGAAAAGATCGT
ATCCTTCACTACAAAGAAAGCCAAGAAAGAATTGAGTGCAATGCAGGATG
AAAACGTCTCCTTTGGTGAGATTCTCTCTCGATATGAGGGTAAAAGATTG
AATCTTCGTCAGGTTATGGATTGGCCAATTACAAGCAAGCCGTATGCAAT
CGCACCTGAAGATGGTAAAACAAGATCGAAGAACAAAAGTCTTTTCAGAA
ATTACCTTCAAGGCCTCAGTCCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011895XLOC_011895Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021248-proteinTCONS_00021248-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021248-exon-sc0000380-1491911889:151671..152241TCONS_00021248-exon-sc0000380-1491911889:151671..152241Clytia hemisphaericaexon
TCONS_00021248-exon-sc0000380-1510915933:151671..152241TCONS_00021248-exon-sc0000380-1510915933:151671..152241Clytia hemisphaericaexon
TCONS_00021248-exon-sc0000380-1575043694:151671..152241TCONS_00021248-exon-sc0000380-1575043694:151671..152241Clytia hemisphaericaexon
TCONS_00021248-exon-sc0000380-1491911889:152443..152835TCONS_00021248-exon-sc0000380-1491911889:152443..152835Clytia hemisphaericaexon
TCONS_00021248-exon-sc0000380-1510915933:152443..152835TCONS_00021248-exon-sc0000380-1510915933:152443..152835Clytia hemisphaericaexon
TCONS_00021248-exon-sc0000380-1575043694:152443..152835TCONS_00021248-exon-sc0000380-1575043694:152443..152835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:151671..152835 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187962	0.366584	0.638459	0.416422	0.570322	0	0.543722	0.339351	0.237587	0.441435	0.19043	0.219067	0.0937555	0.292098	0.106731	0.257712	0.070551	0.144625	0.149855	0.209084	0.136299	0.398891	0	0.146949	0.35316	0.315187	0.0644331	0.0687648	0	0.0531384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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