TCONS_00021242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021242
Unique NameTCONS_00021242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021242 ID=TCONS_00021242|Name=TCONS_00021242|organism=Clytia hemisphaerica|type=transcript|length=569bp
CAAAGTTTACCGATCACATCAGGGAAAACATGGACAAATCGAAAGCTGGA
GCCCTTTTCATGGACTTACGCAAGGCTTTTGATACCGTTATAATCACAGC
TGTCTTCTCAGTAAACTCCCATACTACGGTATTACTGGTAAGGAAGTAAA
TTGGTTTGCAAGCTATTTATTTCATCGTAGCCAAGCTGTTTCAATTGATG
GAGTGACATTGAAATCTGAATTTGTTACACACGGTGTACCCCAAGGATCT
ATCTTGGGTCCGTTACTCTTTGTTATTCTGATTAATGATCTTCCATTACA
ATCATTAAACTGCCAAGTTTTAATGTATGCGGACGATACAGTAATTTATT
TCTCACATAAATCCATCTCTGAGATTGAGAAGTGCATAAATGCTGATGCA
CATTGAATAAATCTTTGGCTGAACGAAAACTGTTTAATCCTCAATCCTAA
GAAGGGAAAAACGGAGTTCATAATTTTTGCTTCACGATTACGTGACCAAA
CTGCAAACATAGTGATAAACAACAACGCTATCAACCAGCCTGATCTTTAT
GAATACCTTGGAGTTAAAC
Run BLAST on NCBI

transcript from alignment at sc0000379:395304..395872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021242 ID=TCONS_00021242|Name=TCONS_00021242|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000379:395304..395872 (Clytia hemisphaerica)
GTTTAACTCCAAGGTATTCATAAAGATCAGGCTGGTTGATAGCGTTGTTG
TTTATCACTATGTTTGCAGTTTGGTCACGTAATCGTGAAGCAAAAATTAT
GAACTCCGTTTTTCCCTTCTTAGGATTGAGGATTAAACAGTTTTCGTTCA
GCCAAAGATTTATTCAATGTGCATCAGCATTTATGCACTTCTCAATCTCA
GAGATGGATTTATGTGAGAAATAAATTACTGTATCGTCCGCATACATTAA
AACTTGGCAGTTTAATGATTGTAATGGAAGATCATTAATCAGAATAACAA
AGAGTAACGGACCCAAGATAGATCCTTGGGGTACACCGTGTGTAACAAAT
TCAGATTTCAATGTCACTCCATCAATTGAAACAGCTTGGCTACGATGAAA
TAAATAGCTTGCAAACCAATTTACTTCCTTACCAGTAATACCGTAGTATG
GGAGTTTACTGAGAAGACAGCTGTGATTATAACGGTATCAAAAGCCTTGC
GTAAGTCCATGAAAAGGGCTCCAGCTTTCGATTTGTCCATGTTTTCCCTG
ATGTGATCGGTAAACTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011889XLOC_011889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021242-exon-sc0000379-1491911889:395304..395872TCONS_00021242-exon-sc0000379-1491911889:395304..395872Clytia hemisphaericaexon
TCONS_00021242-exon-sc0000379-1510915933:395304..395872TCONS_00021242-exon-sc0000379-1510915933:395304..395872Clytia hemisphaericaexon
TCONS_00021242-exon-sc0000379-1575043694:395304..395872TCONS_00021242-exon-sc0000379-1575043694:395304..395872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:395304..395872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.02601	5.18946	3.79381	4.80331	0.398698	1.05019	0.380102	0.474462	0.498274	0.822923	0	0.525066	0.524336	0.408396	0.279798	0.420372	0.0739806	0.682449	1.46664	1.42511	0.190566	0.278854	0.451979	0.410914	0	0.377724	1.7567	1.44215	0.109382	0.668658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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