TCONS_00021239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021239
Unique NameTCONS_00021239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021239 ID=TCONS_00021239|Name=TCONS_00021239|organism=Clytia hemisphaerica|type=transcript|length=306bp
TGTAACTTTATATTATTAGGCAATACCTATTACAAATATAAATTGATATA
CTAAAAAATCTAAATGAGAATACACTGTTTAACAATCATATTAGCTTACC
TGTCACAAATATTATATTGGTTATATATTGGTtatgttatgaaaaaaact
ataagaatacATCGTTATACCAATCATGCTAGAGTACACAGACTATCAAT
TAATGCTTCCCTTATTTAGCCAAAATCAGCAATGAAAATTTAGGtttaaa
acaataatatcacatTAAAGTTTTGTGGTCCATAGTTTGCAGTTAATCAT
TCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000379:159524..159829

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021239 ID=TCONS_00021239|Name=TCONS_00021239|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0000379:159524..159829 (Clytia hemisphaerica)
CTTTGAATGATTAACTGCAAACTATGGACCACAAAACTTTAatgtgatat
tattgttttaaaCCTAAATTTTCATTGCTGATTTTGGCTAAATAAGGGAA
GCATTAATTGATAGTCTGTGTACTCTAGCATGATTGGTATAACGATgtat
tcttatagtttttttcataacataACCAATATATAACCAATATAATATTT
GTGACAGGTAAGCTAATATGATTGTTAAACAGTGTATTCTCATTTAGATT
TTTTAGTATATCAATTTATATTTGTAATAGGTATTGCCTAATAATATAAA
GTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011886XLOC_011886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021239-exon-sc0000379-1491911889:159524..159829TCONS_00021239-exon-sc0000379-1491911889:159524..159829Clytia hemisphaericaexon
TCONS_00021239-exon-sc0000379-1510915933:159524..159829TCONS_00021239-exon-sc0000379-1510915933:159524..159829Clytia hemisphaericaexon
TCONS_00021239-exon-sc0000379-1575043694:159524..159829TCONS_00021239-exon-sc0000379-1575043694:159524..159829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:159524..159829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	23.2505	13.6321	0.469901	0.439915	0.573802	0	0	0.902381	0	0.50488	0	0	0	1.28471	0	0	12.5732	14.0183	0.0541634	3.44813	0	0	3.96369	7.68414	0.36735	0.413314
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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