TCONS_00021238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021238
Unique NameTCONS_00021238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021238 ID=TCONS_00021238|Name=TCONS_00021238|organism=Clytia hemisphaerica|type=transcript|length=422bp
TCATTAGGCAATACCTATTACAAATATAAATTGATATACAAAAAAATCTA
AATGAGAATACACTGTTTAACAATCATATTAGCTTACATGTCACAAATAT
TATATTGGTTATATATTGGTTATGTTATGAAAAAAACTATAAGAATACAT
CGTTATACCAATCATGCTAGAGTACACAGACTATCAATTAATGCTTCCCT
TATTTAGCCAAAATCAGCAATGAAAATTTAGGTTTAAAACAATAATATCA
CATTAAAGTTTTGTGGTCCATAGTTTGCAGTTAATCATTCAAAGCGTATA
TAATACAAGATGATATAATAATAGTAATACCATTTCAAATTTAGTCACTT
ATGTGGAAGAATTAGTCAAAACCTTcgaatttttcaagaaaacttaaaaa
tctcaaatttgaaaatgttttt
Run BLAST on NCBI

transcript from alignment at sc0000379:158812..159233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021238 ID=TCONS_00021238|Name=TCONS_00021238|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000379:158812..159233 (Clytia hemisphaerica)
aaaaacattttcaaatttgagatttttaagttttcttgaaaaattcgAAG
GTTTTGACTAATTCTTCCACATAAGTGACTAAATTTGAAATGGTATTACT
ATTATTATATCATCTTGTATTATATACGCTTTGAATGATTAACTGCAAAC
TATGGACCACAAAACTTTAATGTGATATTATTGTTTTAAACCTAAATTTT
CATTGCTGATTTTGGCTAAATAAGGGAAGCATTAATTGATAGTCTGTGTA
CTCTAGCATGATTGGTATAACGATGTATTCTTATAGTTTTTTTCATAACA
TAACCAATATATAACCAATATAATATTTGTGACATGTAAGCTAATATGAT
TGTTAAACAGTGTATTCTCATTTAGATTTTTTTGTATATCAATTTATATT
TGTAATAGGTATTGCCTAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011885XLOC_011885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021238-exon-sc0000379-1491911889:158812..159233TCONS_00021238-exon-sc0000379-1491911889:158812..159233Clytia hemisphaericaexon
TCONS_00021238-exon-sc0000379-1510915933:158812..159233TCONS_00021238-exon-sc0000379-1510915933:158812..159233Clytia hemisphaericaexon
TCONS_00021238-exon-sc0000379-1575043694:158812..159233TCONS_00021238-exon-sc0000379-1575043694:158812..159233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:158812..159233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.308657	0.483096	0	0	0.421351	1.12673	0	0.971442	0	0	0	0	0.432684	0.227296	0	0	3.88518	3.54565	1.82315	3.62487	0	0	2.30731	4.92397	0	0.545265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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