TCONS_00021152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021152
Unique NameTCONS_00021152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021152 ID=TCONS_00021152|Name=TCONS_00021152|organism=Clytia hemisphaerica|type=transcript|length=826bp
CAGGTAGCCATTTCATATCTATTACGTCAGACTTGCGAGAGTAGCTCTTC
CAGACGAAGCTAGCTGTGGCATTTTGGACTCGTTTTAATTGGTTGAATAG
ATATTGTGGTGCGTTGTGAATTACGGTATTACCATAGTCTATTTTACTCA
ATACAAGAGATTCTGCCAATTGGCGTCGTACACGGTATGGTAAATATCGT
TTGATGAGGGATAGACTCTTCAGCGTGCCATATGCTTTAGTGACGATTTT
TTTGACATGTTCATTTCATGTTAGGTTTTTGGTGAAGATGATTCCTAGCA
GCTTGAATAAGGGAACACGCTCAATCACATTTTCGTTATTTGACTTgatt
tcgaattcaaaattaTGCCTCCTTGCCATTTGAGATGTGGCAAAGAGCAT
CGATTTAGTTTTTCTGGCGTTAAATATCAAGTTCGAATCCAGCGACCATT
TCTCAATTACGCTAATATCAGAGTTAATTTCAGCGACACAATTTTCAAGC
TCGTTTGGTTTCGATATATAGTCGTGTCATCAGCATATTGAACACATTTT
GCGGTGGTTTTTGTTGCCATGTCGTACACGTAAATGTTGAAGAGAATGGG
TCCAAGTATGCTTCCTTGGGGGACGCCATTGGTAACTGTGAGAATGGATG
ACTTCTTGTCGTTGATCTGTACGTACTGAAGTCGATTGCTCAGATAGTTG
GAGATAACATAGAGTGACTTTTTTAAGAATCGTAGTGTGTGAagtttttg
cgaagcgaatttatgagcgaagcagttttgctatattgtgcacgtacctt
taacttctatcccaagcgaaaatttt
Run BLAST on NCBI

transcript from alignment at sc0000378:210658..211483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021152 ID=TCONS_00021152|Name=TCONS_00021152|organism=Clytia hemisphaerica|type=transcript|length=826bp|location=Sequence derived from alignment at sc0000378:210658..211483 (Clytia hemisphaerica)
aaaattttcgcttgggatagaagttaaaggtacgtgcacaatatagcaaa
actgcttcgctcataaattcgcttcgcaaaaactTCACACACTACGATTC
TTAAAAAAGTCACTCTATGTTATCTCCAACTATCTGAGCAATCGACTTCA
GTACGTACAGATCAACGACAAGAAGTCATCCATTCTCACAGTTACCAATG
GCGTCCCCCAAGGAAGCATACTTGGACCCATTCTCTTCAACATTTACGTG
TACGACATGGCAACAAAAACCACCGCAAAATGTGTTCAATATGCTGATGA
CACGACTATATATCGAAACCAAACGAGCTTGAAAATTGTGTCGCTGAAAT
TAACTCTGATATTAGCGTAATTGAGAAATGGTCGCTGGATTCGAACTTGA
TATTTAACGCCAGAAAAACTAAATCGATGCTCTTTGCCACATCTCAAATG
GCAAGGAGGCAtaattttgaattcgaaatcAAGTCAAATAACGAAAATGT
GATTGAGCGTGTTCCCTTATTCAAGCTGCTAGGAATCATCTTCACCAAAA
ACCTAACATGAAATGAACATGTCAAAAAAATCGTCACTAAAGCATATGGC
ACGCTGAAGAGTCTATCCCTCATCAAACGATATTTACCATACCGTGTACG
ACGCCAATTGGCAGAATCTCTTGTATTGAGTAAAATAGACTATGGTAATA
CCGTAATTCACAACGCACCACAATATCTATTCAACCAATTAAAACGAGTC
CAAAATGCCACAGCTAGCTTCGTCTGGAAGAGCTACTCTCGCAAGTCTGA
CGTAATAGATATGAAATGGCTACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011852XLOC_011852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021152-exon-sc0000378-1491911889:210658..211483TCONS_00021152-exon-sc0000378-1491911889:210658..211483Clytia hemisphaericaexon
TCONS_00021152-exon-sc0000378-1510915933:210658..211483TCONS_00021152-exon-sc0000378-1510915933:210658..211483Clytia hemisphaericaexon
TCONS_00021152-exon-sc0000378-1575043694:210658..211483TCONS_00021152-exon-sc0000378-1575043694:210658..211483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:210658..211483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47453	1.48449	2.13279	2.66274	1.76925	0.70702	1.00988	1.8798	1.07328	2.19089	3.04215	2.41316	1.57946	1.27106	1.50378	1.38337	1.33431	1.50869	2.38515	3.34755	2.3764	3.15718	0.814936	1.81867	1.35715	2.11261	1.3864	1.17136	2.4823	2.69547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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