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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021052 ID=TCONS_00021052|Name=TCONS_00021052|organism=Clytia hemisphaerica|type=transcript|length=2108bpRun BLAST on NCBI transcript from alignment at sc0000377:287328..301418+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021052 ID=TCONS_00021052|Name=TCONS_00021052|organism=Clytia hemisphaerica|type=transcript|length=14091bp|location=Sequence derived from alignment at sc0000377:287328..301418+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021052 vs. Swiss-Prot (Human)
Match: TWF1 (Twinfilin-1 OS=Homo sapiens GN=TWF1 PE=1 SV=3) HSP 1 Score: 343.584 bits (880), Expect = 4.570e-111 Identity = 165/341 (48.39%), Postives = 238/341 (69.79%), Query Frame = 1
Query: 151 LPASEELKTFLSSAKDGNCRLIKIGIANEELVLIKSDDVRGSWEEDFDDILANSVEAKQPSYLFFRLDTKNNLGYEWLFIAYSPDDSQVREKMLYAGTRTTMKLEFGGGYITEEIFATLKSDVTLRGFREHKDLKAADAPMTYQEEELKEVK--QMHISAAATTKASTLPGISFPMSEEAINELVRIASKEVSYVQLSIDVNKEMINLEKTCDIETSQLAGEVPTDKPRYHFFLFKHTHEGDYLESIVFIYSMPGYACSVKERMLYSSCKATLLSGCEDVLKMEVTKKLEISEGSELTEEFLQDELHPKKNLHRXXXXXXX--XXXRGAKRIIKPSANAES 1161
+ ASE++K + A++G RL+KI I NE+LV+ SW++D+D + +E KQP Y+ FRLD++N GYEW+FIA+SPD S VR+KMLYA TR T+K EFGGG+I +E+F T+K DV+L G++++ +++ AP+T EEEL+++K ++ TK TL G++FP+S EA L ++ +++++YVQL ID+ E+I L T + E L +P D RYHFFL+KH+HEGDYLESIVFIYSMPGY CS++ERMLYSSCK+ LL E L+M+V +K+EI G ELT +FL +E+HPK++ H+ F+KPK RG +R+I+ A E+
Sbjct: 7 IQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPLLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEA 347 The following BLAST results are available for this feature:
BLAST of TCONS_00021052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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