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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021016 ID=TCONS_00021016|Name=TCONS_00021016|organism=Clytia hemisphaerica|type=transcript|length=4387bp
CTCAAATTGTGTGTAAATTCTGGTAAAGTTTTAGAACGTGCTACTCTGTT
TCCTTCCTCGGTTGTATACAGTATCCCGCAAATACGGTTTAATATAATGA
TTTAGATTTATGCGTTAAAATATTCAGTCAATAGTCAGTCAATATTGACT
TGCCCTTCTTAATATCGATGGCATTAAATTTTGAGAAGAGAAAAGGGTGG
GGATagtctttaaaaaactttagaTCGATTCATTATCCATCTAAGTAATT
GCCACACGCTGCCGTTTTGTATAATCTTTGAAATAAAAGTCGTTTTGCAC
CCTGGTGATAAACTCCTGTCTTCTTTTAAGAAGGCTTTATTTTACGAAAC
TATCATCTTtcgtttttttcataaaatgggATCATATTTCGAAGCTTAGT
CATGTTCAGACAAGAGATGAGGGGGAAAATGGGATTAGGAAATGCTTACG
AAGTATATTCGCATTAATAGGGAGATGTAAGGAAAGAAATCTAGACAGCT
TAGATATAATTTTCACTCTGTTTATAGCTTACATCgtcaggtttgttttg
atttagacTTAGACTTTTGATATAGGTATCTTACCTTATTTTACTCTTAT
CTAGCCAGCTATGACAAACTTAAGGAAGATTCtcttaaaatatataaatt
ctGTCCTATTGGGTAGACTTTTAATTGAccagtttttgttttctttgcaa
CAACAATCGGAGGGACATGACTATCATATCACCACAGTATAAGGTATAAG
AAAGTCGGCTTTCTAATACTATGGTATCACTTATCATCTCAACTCTTTTT
CAGGAAGAATataaatcatcaaaaaatgcAAATGTTTCTCACATCAATCA
TCATATTTGTGACACTTCTCGTACAAAATACCAGGCCATGTGATGAAGAC
TACCAAATACTTAATCACCAGAATAAATATCAACTGTTTTCATCCACCAA
ACATGGTACCTACATGATCCAGAGTTTGATGAGCGTCTCCGAAGGTGGAC
CATGCGATCGAATTTCTATCGGAGGCTTAATTCGTGTCTTAGCTGTCAAA
TTTGCTATCGAAACAAGAAAGGTTGCCACGAATCTAAGTATTGGATATCG
AATCGACGATACATGTTTAAACTTACCAGTAACCATGAATCGAGGTATTG
AGATTATTAATTCTCATGAACAAACAACTTGTTTGGCTACCAACCAAAAC
ACTTGCCCAACCAATCATAACGTCAGAAAATCGAACATTTTTCTAGCAGT
TATCGGtggttatttttctttcacaacGATCCCATTATCAAGCCTCTTAA
GCGCTTATTCTATTCCACAGTTAAGCTTTGGTGCGTCTTCACCCTTACTG
AGTAAACGCAGCCTGTACAAGACTACTTTTCGAAGTATTCCGTCAGATGA
GAGTGCAGTACAGGCTCTTATTGACGTCGTTGGTAAATTTGGGTGGACGT
ACATATACGTTATAGGCTCTGATGACGAATATGGTAAAATTGGTGTCCAT
TTGTTGAAGAAGCATGCAGCCGAAAATGATGTTTGTATTACGGGAGAAAT
GTATATTCCTTTCGAATCCAAAGACACACAACGTATTGCAAAAGAAATCG
CTTTGGACATGCAGAAACAAGAAAATGCCACCGTTGTTGTTATGTTTAAT
TATGCACTAAAAATGGGTGAATATATTTTACAAGAAGCTTCTCATTTGAA
TCTGAGTCGTCTCTATTTGACTGGCGAAGCTTGGAATCCTGAGGTCTTAT
CTTCAGCAAATATACCGGTGGAGCAACTCGAATCTGTCGTTACTGTCTCC
TTGGAGTATGGTCAACCGAGTCAAAAATTCCTTGATTATGTTAACGAAAC
CATCAATTCATGCTATGATAAAGATATTTGGTtgaaacaatatatttttc
aacaatCTGGATGCTTAGTGACTTCCAATGATGATTTTGGAAGGCTCACT
GGCAAagatttaaacaataaaacttgtgaaatcgaaagtaatgaCATTTT
GCAGCGAATCTTAAATGACAATCCAAGTCAAATTAATAATTTGATCGATT
TGGTTGATTCTGTCAGCAATGCTTTAGATGGTTTTACATCAAAGAACTGC
CCCTTATCTTCCATTGATTGTGGAACTAGCATCAAGCCCAGTCAAGTCAG
CGAGGCGTTAAAagcagtcgattttcaaactcgcCGTGGAGACCCATTCA
AATATGATCCTAATGGAAATCCAGTCTACGTGTCGTACTCTATCGAGCAA
ATTCAGTTTGATGCAGTCTCTGGTCAGCACAAATATGAACAGTTAGGACG
CTGGGAATCTCAAAGAGAAAAGAGACTCGATATTGACAAAGCAATGATTA
GAATACCCTCATGGTCGGGCAATGAAATGCCGACTTCATCATGCAGTGAA
AAATGTGTTGCAGGGGAAAAAATCACCGCTAAACAACGTTGTTGTTGGAA
ATGTGAACGATGTCCTAAAGGATCCATAAGCACCGAACCCAATAGCCTTC
AATGTTCACCATGCACCAAGGGTTACCATACTAAAGATTTTATAAATTGT
GAATTGACACCGATTAAACATATCACTTTGGAAGACACTATTGGACTAAC
GACAACGATCATCAGCTGTATAGGGATCGTATTAATGTTTCTGTGTCTCT
ACTTGTTACGCTATTTGAAGGAAACTGCCATAGTCAAGTCTATGGACGTC
AGATTCGTGGCATCATCAACCCTCCTCGTTTTAACATCATTTTGTTACAC
CTTCTTGCATTTGATTTTACCAACCAATAATATTTGCCGAGTACGAAATA
TCTTCTTCCATGCTTTATTGACATTGTTCAGTATGGTGCTTCTTTTAAAG
AACAGATCTGTTTCCAGATTCATTTCAAAGTTTGTTAATAATAAACAAAG
TAGCACGTTTGCCGGTGCTCTGATCTCAGCATTCATTCTTGTATTAGAAA
CTGCTTTCATCTTAGTCTGGCAATTTATGGAAAGTTTTCCCGTCACCAAA
ACTCAAGCAAACTATGAATATTTTGAAGAATGTAAATTGGAATTCAGTTT
GTATCGAATGTTGGCGTTCGTTTTACCATTCATTATAACTGTGATCGCTT
CTGTTCAAAGTTTATCGGAAAGTCATGCTAAAGTACAGTTCGGAGAATAT
AAATTCCTTCATTATACTTGTTTGGCTTTTTGTATCATCAATGTCGCACA
TATCATTACTTTAAACTTGGTCAATAACAGGTATCAAGTCTTAGTTTTAC
TAATCACTACAATGTCTTATGGGTATGTTTACATGGGCTGTATAATATGT
ACCAAAATTTTTCACGGATTTTCCAGCCCTAAACAGGAATCAAAGCAAGT
AATGGGAGTATGCAACATTGGTTTTGAGACCAATAAAACAAGTGAAAACG
AGACAGGAAGTCAATCTATTTCAAAGAGATTCTCCAAAAGCAAAGAACTT
CAAACTTTATAAGTATGTTAGccgtaaatatttttttgttattgcTGTAA
GTTAtgtatttttattgaaattttaaaatgatgTTTGATTAATCCAGATA
TGAAATTTCCGCTCTGCGACAGAGAGTACACCGCCCAACGACTACCCTAA
GGAAAGGGGATCACTTGAActgatgtaaatatttttagatttcgaagAAC
CCATGGTGAATTATTGCGGAAGTAACTttaacagtagttttaccaaattg
tttatcatttcattgaagtagaagatttcttttttcaatttagaaGATCT
TATTATTTTTAAGAGTCTTTTGAAAGTCTCAGCAACTACTTGGCGTGCTG
GATACCCATTAACGGATTCTTGCTTTAGATACTACCtacggttttgtaga
ggtctgcaattcagactaGCAATTACCTGATCAAGTTCAAAAAACCTATT
TCGACAGTtagttaccttatcggggaaaacttcgtcggggaaaagtgacg
aaattttggccaagtgacgaatatttttccccgacgaaaattttccccga
taaggtatacagTACTCAAAACTTAGCCTTTCCAACacgcaagatttttt
aaaatccaaaatttcaaactggcataaaagcttgtaaattgaGAGTTAGA
CCCGAGTTAGACTATGATTTTGTTGTCATTGGAaaggtatttctatttta
aatcATATGGTCAGAAGTTATAGCCTTAAATCTAAGACTCTGgatattta
caaatttagaaCGAGTATACACGTCACTCGGGTTTGAAGGGTTATTGTAG
ATTCTCATACTAAACGTAGCTTTAAGCTCAacataaactttgtttgatgt
CAACGAGTGCGTAAATGAGGTAAGTGATTTTTATTCATTATTCtacaatt
ttctgatttttctttcctttatttGCTCTTTTTACCC Run BLAST on NCBI protein sequence of TCONS_00021016-protein >TCONS_00021016-protein ID=TCONS_00021016-protein|Name=TCONS_00021016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=878bp
MQMFLTSIIIFVTLLVQNTRPCDEDYQILNHQNKYQLFSSTKHGTYMIQS
LMSVSEGGPCDRISIGGLIRVLAVKFAIETRKVATNLSIGYRIDDTCLNL
PVTMNRGIEIINSHEQTTCLATNQNTCPTNHNVRKSNIFLAVIGGYFSFT
TIPLSSLLSAYSIPQLSFGASSPLLSKRSLYKTTFRSIPSDESAVQALID
VVGKFGWTYIYVIGSDDEYGKIGVHLLKKHAAENDVCITGEMYIPFESKD
TQRIAKEIALDMQKQENATVVVMFNYALKMGEYILQEASHLNLSRLYLTG
EAWNPEVLSSANIPVEQLESVVTVSLEYGQPSQKFLDYVNETINSCYDKD
IWLKQYIFQQSGCLVTSNDDFGRLTGKDLNNKTCEIESNDILQRILNDNP
SQINNLIDLVDSVSNALDGFTSKNCPLSSIDCGTSIKPSQVSEALKAVDF
QTRRGDPFKYDPNGNPVYVSYSIEQIQFDAVSGQHKYEQLGRWESQREKR
LDIDKAMIRIPSWSGNEMPTSSCSEKCVAGEKITAKQRCCWKCERCPKGS
ISTEPNSLQCSPCTKGYHTKDFINCELTPIKHITLEDTIGLTTTIISCIG
IVLMFLCLYLLRYLKETAIVKSMDVRFVASSTLLVLTSFCYTFLHLILPT
NNICRVRNIFFHALLTLFSMVLLLKNRSVSRFISKFVNNKQSSTFAGALI
SAFILVLETAFILVWQFMESFPVTKTQANYEYFEECKLEFSLYRMLAFVL
PFIITVIASVQSLSESHAKVQFGEYKFLHYTCLAFCIINVAHIITLNLVN
NRYQVLVLLITTMSYGYVYMGCIICTKIFHGFSSPKQESKQVMGVCNIGF
ETNKTSENETGSQSISKRFSKSKELQTL Run BLAST on NCBI transcript from alignment at sc0000376:30907..35293 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021016 ID=TCONS_00021016|Name=TCONS_00021016|organism=Clytia hemisphaerica|type=transcript|length=4387bp|location=Sequence derived from alignment at sc0000376:30907..35293 (Clytia hemisphaerica)
GGGTAAAAAGAGCaaataaaggaaagaaaaatcagaaaattgtaGAATAA
TGAATAAAAATCACTTACCTCATTTACGCACTCGTTGacatcaaacaaag
tttatgtTGAGCTTAAAGCTACGTTTAGTATGAGAATCTACAATAACCCT
TCAAACCCGAGTGACGTGTATACTCGttctaaatttgtaaatatcCAGAG
TCTTAGATTTAAGGCTATAACTTCTGACCATATgatttaaaatagaaata
ccttTCCAATGACAACAAAATCATAGTCTAACTCGGGTCTAACTCtcaat
ttacaagcttttatgccagtttgaaattttggattttaaaaaatcttgcg
tGTTGGAAAGGCTAAGTTTTGAGTActgtataccttatcggggaaaattt
tcgtcggggaaaaatattcgtcacttggccaaaatttcgtcacttttccc
cgacgaagttttccccgataaggtaactaACTGTCGAAATAGGTTTTTTG
AACTTGATCAGGTAATTGCtagtctgaattgcagacctctacaaaaccgt
aGGTAGTATCTAAAGCAAGAATCCGTTAATGGGTATCCAGCACGCCAAGT
AGTTGCTGAGACTTTCAAAAGACTCTTAAAAATAATAAGATCttctaaat
tgaaaaaagaaatcttctacttcaatgaaatgataaacaatttggtaaaa
ctactgttaaAGTTACTTCCGCAATAATTCACCATGGGTTcttcgaaatc
taaaaatatttacatcagTTCAAGTGATCCCCTTTCCTTAGGGTAGTCGT
TGGGCGGTGTACTCTCTGTCGCAGAGCGGAAATTTCATATCTGGATTAAT
CAAAcatcattttaaaatttcaataaaaatacaTAACTTACAgcaataac
aaaaaaatatttacggCTAACATACTTATAAAGTTTGAAGTTCTTTGCTT
TTGGAGAATCTCTTTGAAATAGATTGACTTCCTGTCTCGTTTTCACTTGT
TTTATTGGTCTCAAAACCAATGTTGCATACTCCCATTACTTGCTTTGATT
CCTGTTTAGGGCTGGAAAATCCGTGAAAAATTTTGGTACATATTATACAG
CCCATGTAAACATACCCATAAGACATTGTAGTGATTAGTAAAACTAAGAC
TTGATACCTGTTATTGACCAAGTTTAAAGTAATGATATGTGCGACATTGA
TGATACAAAAAGCCAAACAAGTATAATGAAGGAATTTATATTCTCCGAAC
TGTACTTTAGCATGACTTTCCGATAAACTTTGAACAGAAGCGATCACAGT
TATAATGAATGGTAAAACGAACGCCAACATTCGATACAAACTGAATTCCA
ATTTACATTCTTCAAAATATTCATAGTTTGCTTGAGTTTTGGTGACGGGA
AAACTTTCCATAAATTGCCAGACTAAGATGAAAGCAGTTTCTAATACAAG
AATGAATGCTGAGATCAGAGCACCGGCAAACGTGCTACTTTGTTTATTAT
TAACAAACTTTGAAATGAATCTGGAAACAGATCTGTTCTTTAAAAGAAGC
ACCATACTGAACAATGTCAATAAAGCATGGAAGAAGATATTTCGTACTCG
GCAAATATTATTGGTTGGTAAAATCAAATGCAAGAAGGTGTAACAAAATG
ATGTTAAAACGAGGAGGGTTGATGATGCCACGAATCTGACGTCCATAGAC
TTGACTATGGCAGTTTCCTTCAAATAGCGTAACAAGTAGAGACACAGAAA
CATTAATACGATCCCTATACAGCTGATGATCGTTGTCGTTAGTCCAATAG
TGTCTTCCAAAGTGATATGTTTAATCGGTGTCAATTCACAATTTATAAAA
TCTTTAGTATGGTAACCCTTGGTGCATGGTGAACATTGAAGGCTATTGGG
TTCGGTGCTTATGGATCCTTTAGGACATCGTTCACATTTCCAACAACAAC
GTTGTTTAGCGGTGATTTTTTCCCCTGCAACACATTTTTCACTGCATGAT
GAAGTCGGCATTTCATTGCCCGACCATGAGGGTATTCTAATCATTGCTTT
GTCAATATCGAGTCTCTTTTCTCTTTGAGATTCCCAGCGTCCTAACTGTT
CATATTTGTGCTGACCAGAGACTGCATCAAACTGAATTTGCTCGATAGAG
TACGACACGTAGACTGGATTTCCATTAGGATCATATTTGAATGGGTCTCC
ACGgcgagtttgaaaatcgactgctTTTAACGCCTCGCTGACTTGACTGG
GCTTGATGCTAGTTCCACAATCAATGGAAGATAAGGGGCAGTTCTTTGAT
GTAAAACCATCTAAAGCATTGCTGACAGAATCAACCAAATCGATCAAATT
ATTAATTTGACTTGGATTGTCATTTAAGATTCGCTGCAAAATGtcattac
tttcgatttcacaagttttattgtttaaatctTTGCCAGTGAGCCTTCCA
AAATCATCATTGGAAGTCACTAAGCATCCAGattgttgaaaaatatattg
tttcaACCAAATATCTTTATCATAGCATGAATTGATGGTTTCGTTAACAT
AATCAAGGAATTTTTGACTCGGTTGACCATACTCCAAGGAGACAGTAACG
ACAGATTCGAGTTGCTCCACCGGTATATTTGCTGAAGATAAGACCTCAGG
ATTCCAAGCTTCGCCAGTCAAATAGAGACGACTCAGATTCAAATGAGAAG
CTTCTTGTAAAATATATTCACCCATTTTTAGTGCATAATTAAACATAACA
ACAACGGTGGCATTTTCTTGTTTCTGCATGTCCAAAGCGATTTCTTTTGC
AATACGTTGTGTGTCTTTGGATTCGAAAGGAATATACATTTCTCCCGTAA
TACAAACATCATTTTCGGCTGCATGCTTCTTCAACAAATGGACACCAATT
TTACCATATTCGTCATCAGAGCCTATAACGTATATGTACGTCCACCCAAA
TTTACCAACGACGTCAATAAGAGCCTGTACTGCACTCTCATCTGACGGAA
TACTTCGAAAAGTAGTCTTGTACAGGCTGCGTTTACTCAGTAAGGGTGAA
GACGCACCAAAGCTTAACTGTGGAATAGAATAAGCGCTTAAGAGGCTTGA
TAATGGGATCgttgtgaaagaaaaataaccaCCGATAACTGCTAGAAAAA
TGTTCGATTTTCTGACGTTATGATTGGTTGGGCAAGTGTTTTGGTTGGTA
GCCAAACAAGTTGTTTGTTCATGAGAATTAATAATCTCAATACCTCGATT
CATGGTTACTGGTAAGTTTAAACATGTATCGTCGATTCGATATCCAATAC
TTAGATTCGTGGCAACCTTTCTTGTTTCGATAGCAAATTTGACAGCTAAG
ACACGAATTAAGCCTCCGATAGAAATTCGATCGCATGGTCCACCTTCGGA
GACGCTCATCAAACTCTGGATCATGTAGGTACCATGTTTGGTGGATGAAA
ACAGTTGATATTTATTCTGGTGATTAAGTATTTGGTAGTCTTCATCACAT
GGCCTGGTATTTTGTACGAGAAGTGTCACAAATATGATGATTGATGTGAG
AAACATTTgcattttttgatgatttatATTCTTCCTGAAAAAGAGTTGAG
ATGATAAGTGATACCATAGTATTAGAAAGCCGACTTTCTTATACCTTATA
CTGTGGTGATATGATAGTCATGTCCCTCCGATTGTTGttgcaaagaaaac
aaaaactggTCAATTAAAAGTCTACCCAATAGGACagaatttatatattt
taagaGAATCTTCCTTAAGTTTGTCATAGCTGGCTAGATAAGAGTAAAAT
AAGGTAAGATACCTATATCAAAAGTCTAAgtctaaatcaaaacaaacctg
acGATGTAAGCTATAAACAGAGTGAAAATTATATCTAAGCTGTCTAGATT
TCTTTCCTTACATCTCCCTATTAATGCGAATATACTTCGTAAGCATTTCC
TAATCCCATTTTCCCCCTCATCTCTTGTCTGAACATGACTAAGCTTCGAA
ATATGATcccattttatgaaaaaaacgaAAGATGATAGTTTCGTAAAATA
AAGCCTTCTTAAAAGAAGACAGGAGTTTATCACCAGGGTGCAAAACGACT
TTTATTTCAAAGATTATACAAAACGGCAGCGTGTGGCAATTACTTAGATG
GATAATGAATCGAtctaaagttttttaaagactATCCCCACCCTTTTCTC
TTCTCAAAATTTAATGCCATCGATATTAAGAAGGGCAAGTCAATATTGAC
TGACTATTGACTGAATATTTTAACGCATAAATCTAAATCATTATATTAAA
CCGTATTTGCGGGATACTGTATACAACCGAGGAAGGAAACAGAGTAGCAC
GTTCTAAAACTTTACCAGAATTTACACACAATTTGAG Coding sequence (CDS) from alignment at sc0000376:30907..35293 >TCONS_00021016 ID=TCONS_00021016|Name=TCONS_00021016|organism=Clytia hemisphaerica|type=CDS|length=2637bp|location=Sequence derived from alignment at sc0000376:30907..35293 (Clytia hemisphaerica)
TTATAAAGTTTGAAGTTCTTTGCTTTTGGAGAATCTCTTTGAAATAGATT
GACTTCCTGTCTCGTTTTCACTTGTTTTATTGGTCTCAAAACCAATGTTG
CATACTCCCATTACTTGCTTTGATTCCTGTTTAGGGCTGGAAAATCCGTG
AAAAATTTTGGTACATATTATACAGCCCATGTAAACATACCCATAAGACA
TTGTAGTGATTAGTAAAACTAAGACTTGATACCTGTTATTGACCAAGTTT
AAAGTAATGATATGTGCGACATTGATGATACAAAAAGCCAAACAAGTATA
ATGAAGGAATTTATATTCTCCGAACTGTACTTTAGCATGACTTTCCGATA
AACTTTGAACAGAAGCGATCACAGTTATAATGAATGGTAAAACGAACGCC
AACATTCGATACAAACTGAATTCCAATTTACATTCTTCAAAATATTCATA
GTTTGCTTGAGTTTTGGTGACGGGAAAACTTTCCATAAATTGCCAGACTA
AGATGAAAGCAGTTTCTAATACAAGAATGAATGCTGAGATCAGAGCACCG
GCAAACGTGCTACTTTGTTTATTATTAACAAACTTTGAAATGAATCTGGA
AACAGATCTGTTCTTTAAAAGAAGCACCATACTGAACAATGTCAATAAAG
CATGGAAGAAGATATTTCGTACTCGGCAAATATTATTGGTTGGTAAAATC
AAATGCAAGAAGGTGTAACAAAATGATGTTAAAACGAGGAGGGTTGATGA
TGCCACGAATCTGACGTCCATAGACTTGACTATGGCAGTTTCCTTCAAAT
AGCGTAACAAGTAGAGACACAGAAACATTAATACGATCCCTATACAGCTG
ATGATCGTTGTCGTTAGTCCAATAGTGTCTTCCAAAGTGATATGTTTAAT
CGGTGTCAATTCACAATTTATAAAATCTTTAGTATGGTAACCCTTGGTGC
ATGGTGAACATTGAAGGCTATTGGGTTCGGTGCTTATGGATCCTTTAGGA
CATCGTTCACATTTCCAACAACAACGTTGTTTAGCGGTGATTTTTTCCCC
TGCAACACATTTTTCACTGCATGATGAAGTCGGCATTTCATTGCCCGACC
ATGAGGGTATTCTAATCATTGCTTTGTCAATATCGAGTCTCTTTTCTCTT
TGAGATTCCCAGCGTCCTAACTGTTCATATTTGTGCTGACCAGAGACTGC
ATCAAACTGAATTTGCTCGATAGAGTACGACACGTAGACTGGATTTCCAT
TAGGATCATATTTGAATGGGTCTCCACGgcgagtttgaaaatcgactgct
TTTAACGCCTCGCTGACTTGACTGGGCTTGATGCTAGTTCCACAATCAAT
GGAAGATAAGGGGCAGTTCTTTGATGTAAAACCATCTAAAGCATTGCTGA
CAGAATCAACCAAATCGATCAAATTATTAATTTGACTTGGATTGTCATTT
AAGATTCGCTGCAAAATGtcattactttcgatttcacaagttttattgtt
taaatctTTGCCAGTGAGCCTTCCAAAATCATCATTGGAAGTCACTAAGC
ATCCAGattgttgaaaaatatattgtttcaACCAAATATCTTTATCATAG
CATGAATTGATGGTTTCGTTAACATAATCAAGGAATTTTTGACTCGGTTG
ACCATACTCCAAGGAGACAGTAACGACAGATTCGAGTTGCTCCACCGGTA
TATTTGCTGAAGATAAGACCTCAGGATTCCAAGCTTCGCCAGTCAAATAG
AGACGACTCAGATTCAAATGAGAAGCTTCTTGTAAAATATATTCACCCAT
TTTTAGTGCATAATTAAACATAACAACAACGGTGGCATTTTCTTGTTTCT
GCATGTCCAAAGCGATTTCTTTTGCAATACGTTGTGTGTCTTTGGATTCG
AAAGGAATATACATTTCTCCCGTAATACAAACATCATTTTCGGCTGCATG
CTTCTTCAACAAATGGACACCAATTTTACCATATTCGTCATCAGAGCCTA
TAACGTATATGTACGTCCACCCAAATTTACCAACGACGTCAATAAGAGCC
TGTACTGCACTCTCATCTGACGGAATACTTCGAAAAGTAGTCTTGTACAG
GCTGCGTTTACTCAGTAAGGGTGAAGACGCACCAAAGCTTAACTGTGGAA
TAGAATAAGCGCTTAAGAGGCTTGATAATGGGATCgttgtgaaagaaaaa
taaccaCCGATAACTGCTAGAAAAATGTTCGATTTTCTGACGTTATGATT
GGTTGGGCAAGTGTTTTGGTTGGTAGCCAAACAAGTTGTTTGTTCATGAG
AATTAATAATCTCAATACCTCGATTCATGGTTACTGGTAAGTTTAAACAT
GTATCGTCGATTCGATATCCAATACTTAGATTCGTGGCAACCTTTCTTGT
TTCGATAGCAAATTTGACAGCTAAGACACGAATTAAGCCTCCGATAGAAA
TTCGATCGCATGGTCCACCTTCGGAGACGCTCATCAAACTCTGGATCATG
TAGGTACCATGTTTGGTGGATGAAAACAGTTGATATTTATTCTGGTGATT
AAGTATTTGGTAGTCTTCATCACATGGCCTGGTATTTTGTACGAGAAGTG
TCACAAATATGATGATTGATGTGAGAAACATTTgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021016-exon-sc0000376-1491911889:30907..35293 | TCONS_00021016-exon-sc0000376-1491911889:30907..35293 | Clytia hemisphaerica | exon |
| TCONS_00021016-exon-sc0000376-1510915933:30907..35293 | TCONS_00021016-exon-sc0000376-1510915933:30907..35293 | Clytia hemisphaerica | exon |
| TCONS_00021016-exon-sc0000376-1575043694:30907..35293 | TCONS_00021016-exon-sc0000376-1575043694:30907..35293 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000376 | supercontig | sc0000376:30907..35293 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00021016 vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 1.611e-51 Identity = 189/831 (22.74%), Postives = 357/831 (42.96%), Query Frame = 1
Query: 952 HGTYMIQSLMSVSEGG----PCDRISIG-GLIRVLAVKFAIE----TRKVATNLSIGYRIDDTCLNLPVTMNRGIEIINSHEQTTCLATNQNTCPTNHNVRKSNIFL---AVIGGYFSFTTIPLSSLLSAYSIPQLSFGASSPLLSKRSLYKTTFRSIPSDESAVQALIDVVGKFGWTYIYVIGSDDEYGKIGVHLLKKHAAENDVCITGEMYIPFESKDTQRIAKEIALDMQKQENATVVVMFNYALKMGEYILQEASHLNLSRLYLTGEAWNPEVLSSANIPVEQLESVVTVSLEYG-QPSQKFLDYVNETINSCYDKDIWLKQYIFQQSGCLVTSNDDFGRLTGKDLNNKTCEIESNDILQRILNDNPSQINNLIDLVDSVSNALDGFTSKNCPLSSIDCGTSIKPSQVSEALKAVDFQTRRGD---------PF----------KYDPNGNPVYVSYSIEQIQFDAVSGQHKYEQLGRWESQREKRLDIDKAMIRIPSWSGNEMPTSSCSEKCVAGE--KITAKQRCCWKCERC-PKGSISTEPNSLQCSPCTKG-YHTKDFINCELTPIKHITLEDTIGLTTTIISCIGIVXXXXXXXXXXXXKETAIVKSMDVRFVASSTLLVLTSFCYTFLHLILPTNNICRVRNIFFHALLTLFSMVLLLKNRSVSRFISKFVNNKQSSTFAGALISAFI----LVLETAFILVWQFMESFPVTKTQANYEYFEECKLEFSLY---RMLAFVLPFIITVIASVQSLSESHAKVQFGEYKFLHYTCLAFCIINVAHIITLNLVNNRYQV--LVLLITTMSYGYVYMGCIICTKI 3309
G ++ L ++E G C RI+ G+ R+ A+ FAI+ + + +G I DTC + + +E + + T + + CP + NI L VIGG +S +I +++LL + IPQ+S+ ++S LS +S Y R++P D +A+ +++ F WTY+ + S+ +YG+ G+ ++ A ++CI + + ++ + ++ ++ NA VVV+F + E ++ AS N S ++ + W + + I + + ++LE QP ++F Y ++ W + + Q+ C + + + R+ K L I+S++ Q S+I +++ V ++++AL CP +++ +A+K +D + D PF K+D G+ + Y++ F V G++ Y ++G W + L +D I WS N +PTS CS+ C E + CCW C C P ++ E C C G + T D C P +I ED + I+C+G + + + + T +VK+ V S+C TF + P+ IC +R + + + LL K ++R N Q F FI ++++ + VW +E+ P T+ E E L+ ++ +++ I+ ++ +V + F E KF+ +T CII +A + + ++ Y+V + I+ G+V +GC+ K+
Sbjct: 36 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA--SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKV--GRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRE-LIAAASRANASFTWVASDGWGAQ---ESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHL-----AIDSSNYEQE------SKIMFVVNAVYAMAHALHKMQRTLCP----------NTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNV--FNFQNVGGKYSYLKVGHW----AETLSLDVNSIH---WSRNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLADE---FTCMDCGSGQWPTADLTGCYDLPEDYIRWEDAWAIGPVTIACLGFMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEA-PGTRRYTLAEKRETVILKCNVKDSSMLISLTYDVILVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKV 823
The following BLAST results are available for this feature:
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