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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021010 ID=TCONS_00021010|Name=TCONS_00021010|organism=Clytia hemisphaerica|type=transcript|length=564bp TCCCTTTACACTTCTCTGTCTGTAGATATAAAACAAACTAAAAAACTACT TTTTAATCATCTGTTGGAAGAGGAAGTTTAGTTTCATTACAATGAATTAT TCTCAAGAACAAAGAAGTTATGATGACAGATTGGAGTATCAATTCTTGCA AGATCAAGTTCGCAGGTTAACGGCTGTGGTTAGAGAATACCAACGAAGAT ATCTCCCAATAGAAGAGAGAACTGTCGAGGATGCACCTTTAGCTCCATGG ATGACAGACCCAAGCATGTTATCGCCATTGCTCGTGGAATATGACAACAA TATCAGATCTCTAAAAGAACAAGTCAAGTCTTACAAAGAAGAGTTTGAAA ACCTGCAAGGAAAATCCAAAACAATTGTAGAAGAGAATAACAGGCTACAT CGTGAGCTGCGAACGACAATAGAAAACCAACTAGAAGTCTTGCAGCAATC AGATGGAATCAACAATAAAACACAAGTGCAGATTGACCAATTACAACAGA AAATGAAGCGAATCAGTGATgaaaaagaaagaattgcTGCAAATTTCGAA GAATGTAACAGGGA Run BLAST on NCBI protein sequence of TCONS_00021010-protein >TCONS_00021010-protein ID=TCONS_00021010-protein|Name=TCONS_00021010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MNYSQEQRSYDDRLEYQFLQDQVRRLTAVVREYQRRYLPIEERTVEDAPL APWMTDPSMLSPLLVEYDNNIRSLKEQVKSYKEEFENLQGKSKTIVEENN RLHRELRTTIENQLEVLQQSDGINNKTQVQIDQLQQKMKRISDEKERIAA NFEECNR Run BLAST on NCBI transcript from alignment at sc0000376:190594..194945- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021010 ID=TCONS_00021010|Name=TCONS_00021010|organism=Clytia hemisphaerica|type=transcript|length=4352bp|location=Sequence derived from alignment at sc0000376:190594..194945- (Clytia hemisphaerica) TCCCTTTACACTTCTCTGTCTGTAGATATAAAACAAACTAAAAAACTACT
TTTTAATCATCTGTTGGAAGAGGAAGTTTAGTTTCATTACAATGAATTAT
TCTCAAGAACAAAGAAGTTATGATGACAGATTGGAGTATCAATTCTTGCA
AGATCAAGGTTGGTTTTGTGTATCTTTTCTTCGTCCAAGATTTTGAAAAT
CAATTGTTTAATTCACTTCAATTTGACTAAAGCACCTGGATAGGAAGGGT
ACATTGAGATGTAAAACTTAAAATAAATGTTGTTTTAGTTCGCAGGTTAA
CGGCTGTGGTTAGAGAATACCAACGAAGATATCTCCCAATAGAAGAGAGA
ACTGTCGAGGTATTGCATGTGGCTTTGAACCATTTTTAGCATTTTATTAA
GTAATGATTATTTTGAAAGCATTGTTTAACTCTTGTTACTAGAAAAAAAG
AATTCCAAGGAGCTGGGAACATTTTTAATTACAATTTTTAGAGCAAAGTA
GCTGAAGATGTGTTCAAGTATTTTTAAAAATTAATAAAAAATCTCCTGAT
TTTTCATTGTTTTCCAAATCTTTCAGAAGGAGCCTTTAAAAATTATACAC
CCAATTAAAATTTCTAGTATAAGTTAATTTATATAAAGATTTTAAATAGG
GCTAAAACTTGCAAAGATTGGTATTGTGATTTTTAAAACAATACATATTG
CTAAAAGATTCCTTTTCTTTTTCGTGAACTAGGAGAAAATATCAAATCTT
TTTTTTCATGAATATTTGTACACAAGTTGATAAGATAAAAAATTAATATG
TCATTAATTGATTTTTAGGATGCACCTTTAGCTCCATGGATGACAGACCC
AAGGTAAACAGTTAAGATTGTTTTGGATAGTAAGGAAAGTGCCTTTTTTG
AGTAAATCAAGATTTTAATCTGCATTCCACCTTATAAATTTACAATAAGG
TAACTATTGACACACTCGTCCAAAGAGTGTTAAGCAATAGGAAACGATTA
CTCATCTTTATTATAATATTATTCCAAAATCAAACTTGAGAATCATTCAC
TTCAAGTTAGATTGTAAACTGATTTTCTTTGGTGAAAAATGAAATTCTCT
TTAAAATATTTTCTTGATAGCATGTTATCGCCATTGCTCGTGGAATATGA
CAACAATATCAGATCTCTAAAAGAACAAGTCAAGTCTTACAAAGTGAGTA
GCTACTTTTTACTCTTTGTTGTCATTTGAGGTTTAGGCTCTTGATTTGAC
CCAGGGGTTTCGGAACAATCGACTATTTTAACCTCTGACTTATCAATAAC
CCTCCAGATTTTGACATGTCTTCTTTAATAAAGTTCTTTCTTTGTAATTA
TCTTTTTGTGTATTTCCAGGAAGAGTTTGAAAACCTGCAAGGAAAATCCA
AAACAATTGTAGAAGAGAATAACAGGTTACTGTATTATACATATTTTTCA
ATTTCTTATTCTTTACAGTTTCCATTTAAGTGTCTGTTGTAATCATTTGC
TCCCCCTAAGCTGACAAAATGGCCATATATGAAAATTGTTTATCCTATAC
TTCAAANCTAGATTCTGTTGTAATCATTTGCTCCCCCCTGAGCTGACAAA
ATGGCCATATATGCAAATTGTTTATCCTATACTTCAAAATGCTCAAAGTA
TTCTGACTTTGATTGATTTCTGTTTATAGCCAGGCTGAAGCTATGACTCA
GAATTTAAAAAAATTCAAAGAAATCGCGTGTTTTAATTTTTTAGTTTAAA
CGATTTTGGAACTAACCTTGTTTATAATCTTTCATTTACATTTTTATGAC
AGGCTACATCGTGAGCTGCGAACGACAATAGAAAACCAACTAGAAGTCTT
GCAGCAATCAGATGGAATCAACAATAAAACACAAGTGCAGATTGACCAAT
TACAACAGAAAATGAAGCGAATCAGTGATGTAAAACATTTATTGGTTTTT
TACCTTTACTTTTTTCGCCTCAATAGTGAGATAATCTTGATGTACTGATG
TACTGAAAGAGCTTCCATTAAAAATCATATATTTCTATGAAAAGTTGAAA
ATTAACATGTCGGCTCTTGTAGGGAGGTTTGTGTGTTGAGTAATACCGGG
TGCACCAAAAAAAAGTATACAACTTTGTCGAGATATTGTGAGCTTCAGGA
TTTATTTTTTTTTTTATTGTATAGAGGATGCTCTCACTTGAATTTTGAGC
TAATATACATTAAATTTGAAAACGTAGCTCAAAAATTATTTCAAAAAAAC
TGACTTTTTTTTAATGTCGAAATTTCAAAAAACCATCAAAAACAGCGAGC
AAACTTTTCTCTTGACACTTACCTTGTTTACATATAAAAATACCAAAAAA
TGCAACTGTGTTCATCAAAACTCGTCACGGAATTTAAGAATATGGTAAAA
CAAGCTATTCCCATGTAAGATGATATTTTTGGAAAAGCTGAAATTTTTTT
GGAAATCTCCAAGGTTTTGATGTTATGCTATGTGAGAAAATTTTTGAAAA
AATAGATCACCATTCCTCGACTAGTTGTTTAAAGAACTTGGGTCTGCATT
GAGTTTGATGGTTTTGAAAATGTTCATGACGTGCAAATAAGATGGACAAA
CTGTTGGAAAAATATAAGCGGAGAGAAAAAAGAATAAAAGAAACAATGAA
ATAGTTTTTTTGTTATTTTGTCTTATTTATAGCGTGATTGCTGTTTTTAA
TGATTTTTTGAAATTTCGACATGAAAAAAAGTTAGTTTTTTAGAAATAAC
GTTCGAATTGCTTTTTCTAATTTAATGTATAATAGCTCAAAATTCAAGTT
AGAGCATCCTCTATACAATAAAAAAAGGATGAACAAAAAATTTAAATCCT
GAAGCTCACAATATCTCGACAAACCTGTATACTTTTTTTGGTGCACCCGG
TAGAACTGGGGGCAGAGCTGATAGGTTACAAATATTTTAAATTATGTTAA
AAATCTATGCTGTGGGGAAGGTTTTGACCCCTCTTTAAAAATGTTTTTGC
CTGCTGCTCAATAAATTTATTGGGAATTTACATACAAAATTTGTGAAGGT
GGGGGCGTGGGGTACGTTTTTAAAATTTAGCCGAGGGCTATTTTCTTACT
CCCCCTGAAAATGCTGGAGGTTTAAATAGGGCAAATGTGCTGACTATCCT
GCTAGTGGTGGATCAGGGGGGGTCAACATCCAGATACCAGACCCATAGCC
GGGTGGTGGTGTCTTTTTTTCCTTTAAAAGTCTGAAAAGTCAATTGGTAT
TGATGGGGTGGGTCCCCCTTTTTTTAGAAAAAGAGTTATCCTCAGTTGGT
ATTGATACCAAAATAGGGGGTGGGTACCCCTTTTTTTAAATAATATGATT
CAGAAAGTTGGTATCCATATCAAAATGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTATT
GGTACTAAATTAGGGGGTGGGTCCCATGATATTTTGTCAAATTCAAAAAG
TCATGTTGGTATCGATACCAAATTAAGGGGGTGGGTCCCCCATTTTTCTG
AAAATTATGATTTTCAAGTTGGTATCGATACCAAAATAAGGGGGTGGGTC
CCCCCTTTTTCTGAAAATTATGATTTTCAATTTGGAATCGATACCAATTT
TGGGGTGGTGGTGTTAACTTAGCTCAAAAGGTCAAAAGTCAGGTTTTTGG
GCTATGGGTTGGTATTATAAATGTTGACCCCCCCCCCTGGGTGGATAACA
GACAAACATAATAGACTTTTGTGTCGATTTTAGCAAACTTTCATCTCTTT
TTTTACAGGAAAAAGAAAGAATTGCTGCAAATTTCGAAGAATGTAACAGG
GA Coding sequence (CDS) from alignment at sc0000376:190594..194945- >TCONS_00021010 ID=TCONS_00021010|Name=TCONS_00021010|organism=Clytia hemisphaerica|type=CDS|length=3297bp|location=Sequence derived from alignment at sc0000376:190594..194945- (Clytia hemisphaerica) GAAAAAGAAAGAATTGCTGCAAATTTCGAAGAATGTAACAGGGCTACATC GTGAGCTGCGAACGACAATAGAAAACCAACTAGAAGTCTTGCAGCAATCA GATGGAATCAACAATAAAACACAAGTGCAGATTGACCAATTACAACAGAA AATGAAGCGAATCAGTGATGAAGAGTTTGAAAACCTGCAAGGAAAATCCA AAACAATTGTAGAAGAGAATAACAGCATGTTATCGCCATTGCTCGTGGAA TATGACAACAATATCAGATCTCTAAAAGAACAAGTCAAGTCTTACAAAGA TGCACCTTTAGCTCCATGGATGACAGACCCAAGTTCGCAGGTTAACGGCT GTGGTTAGAGAATACCAACGAAGATATCTCCCAATAGAAGAGAGAACTGT CGAGATGAATTATTCTCAAGAACAAAGAAGTTATGATGACAGATTGGAGT ATCAATTCTTGCAAGATCAAGGAAAAAGAAAGAATTGCTGCAAATTTCGA AGAATGTAACAGGGCTACATCGTGAGCTGCGAACGACAATAGAAAACCAA CTAGAAGTCTTGCAGCAATCAGATGGAATCAACAATAAAACACAAGTGCA GATTGACCAATTACAACAGAAAATGAAGCGAATCAGTGATGAAGAGTTTG AAAACCTGCAAGGAAAATCCAAAACAATTGTAGAAGAGAATAACAGCATG TTATCGCCATTGCTCGTGGAATATGACAACAATATCAGATCTCTAAAAGA ACAAGTCAAGTCTTACAAAGATGCACCTTTAGCTCCATGGATGACAGACC CAAGTTCGCAGGTTAACGGCTGTGGTTAGAGAATACCAACGAAGATATCT CCCAATAGAAGAGAGAACTGTCGAGATGAATTATTCTCAAGAACAAAGAA GTTATGATGACAGATTGGAGTATCAATTCTTGCAAGATCAAGGAAAAAGA AAGAATTGCTGCAAATTTCGAAGAATGTAACAGGGCTACATCGTGAGCTG CGAACGACAATAGAAAACCAACTAGAAGTCTTGCAGCAATCAGATGGAAT CAACAATAAAACACAAGTGCAGATTGACCAATTACAACAGAAAATGAAGC GAATCAGTGATGAAGAGTTTGAAAACCTGCAAGGAAAATCCAAAACAATT GTAGAAGAGAATAACAGCATGTTATCGCCATTGCTCGTGGAATATGACAA CAATATCAGATCTCTAAAAGAACAAGTCAAGTCTTACAAAGATGCACCTT TAGCTCCATGGATGACAGACCCAAGTTCGCAGGTTAACGGCTGTGGTTAG AGAATACCAACGAAGATATCTCCCAATAGAAGAGAGAACTGTCGAGATGA ATTATTCTCAAGAACAAAGAAGTTATGATGACAGATTGGAGTATCAATTC TTGCAAGATCAAGGAAAAAGAAAGAATTGCTGCAAATTTCGAAGAATGTA ACAGGGCTACATCGTGAGCTGCGAACGACAATAGAAAACCAACTAGAAGT CTTGCAGCAATCAGATGGAATCAACAATAAAACACAAGTGCAGATTGACC AATTACAACAGAAAATGAAGCGAATCAGTGATGAAGAGTTTGAAAACCTG CAAGGAAAATCCAAAACAATTGTAGAAGAGAATAACAGCATGTTATCGCC ATTGCTCGTGGAATATGACAACAATATCAGATCTCTAAAAGAACAAGTCA AGTCTTACAAAGATGCACCTTTAGCTCCATGGATGACAGACCCAAGTTCG CAGGTTAACGGCTGTGGTTAGAGAATACCAACGAAGATATCTCCCAATAG AAGAGAGAACTGTCGAGATGAATTATTCTCAAGAACAAAGAAGTTATGAT GACAGATTGGAGTATCAATTCTTGCAAGATCAAGGAAAAAGAAAGAATTG CTGCAAATTTCGAAGAATGTAACAGGGCTACATCGTGAGCTGCGAACGAC AATAGAAAACCAACTAGAAGTCTTGCAGCAATCAGATGGAATCAACAATA AAACACAAGTGCAGATTGACCAATTACAACAGAAAATGAAGCGAATCAGT GATGAAGAGTTTGAAAACCTGCAAGGAAAATCCAAAACAATTGTAGAAGA GAATAACAGCATGTTATCGCCATTGCTCGTGGAATATGACAACAATATCA GATCTCTAAAAGAACAAGTCAAGTCTTACAAAGATGCACCTTTAGCTCCA TGGATGACAGACCCAAGTTCGCAGGTTAACGGCTGTGGTTAGAGAATACC AACGAAGATATCTCCCAATAGAAGAGAGAACTGTCGAGATGAATTATTCT CAAGAACAAAGAAGTTATGATGACAGATTGGAGTATCAATTCTTGCAAGA TCAAGGAAAAAGAAAGAATTGCTGCAAATTTCGAAGAATGTAACAGGGCT ACATCGTGAGCTGCGAACGACAATAGAAAACCAACTAGAAGTCTTGCAGC AATCAGATGGAATCAACAATAAAACACAAGTGCAGATTGACCAATTACAA CAGAAAATGAAGCGAATCAGTGATGAAGAGTTTGAAAACCTGCAAGGAAA ATCCAAAACAATTGTAGAAGAGAATAACAGCATGTTATCGCCATTGCTCG TGGAATATGACAACAATATCAGATCTCTAAAAGAACAAGTCAAGTCTTAC AAAGATGCACCTTTAGCTCCATGGATGACAGACCCAAGTTCGCAGGTTAA CGGCTGTGGTTAGAGAATACCAACGAAGATATCTCCCAATAGAAGAGAGA ACTGTCGAGATGAATTATTCTCAAGAACAAAGAAGTTATGATGACAGATT GGAGTATCAATTCTTGCAAGATCAAGGAAAAAGAAAGAATTGCTGCAAAT TTCGAAGAATGTAACAGGGCTACATCGTGAGCTGCGAACGACAATAGAAA ACCAACTAGAAGTCTTGCAGCAATCAGATGGAATCAACAATAAAACACAA GTGCAGATTGACCAATTACAACAGAAAATGAAGCGAATCAGTGATGAAGA GTTTGAAAACCTGCAAGGAAAATCCAAAACAATTGTAGAAGAGAATAACA GCATGTTATCGCCATTGCTCGTGGAATATGACAACAATATCAGATCTCTA AAAGAACAAGTCAAGTCTTACAAAGATGCACCTTTAGCTCCATGGATGAC AGACCCAAGTTCGCAGGTTAACGGCTGTGGTTAGAGAATACCAACGAAGA TATCTCCCAATAGAAGAGAGAACTGTCGAGATGAATTATTCTCAAGAACA AAGAAGTTATGATGACAGATTGGAGTATCAATTCTTGCAAGATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00021010-exon-sc0000376-1575043694:194788..194945 | TCONS_00021010-exon-sc0000376-1575043694:194788..194945 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1575043694:194587..194657 | TCONS_00021010-exon-sc0000376-1575043694:194587..194657 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1575043694:194093..194127 | TCONS_00021010-exon-sc0000376-1575043694:194093..194127 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1575043694:193753..193825 | TCONS_00021010-exon-sc0000376-1575043694:193753..193825 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1575043694:193521..193576 | TCONS_00021010-exon-sc0000376-1575043694:193521..193576 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1575043694:193017..193143 | TCONS_00021010-exon-sc0000376-1575043694:193017..193143 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1575043694:190594..190637 | TCONS_00021010-exon-sc0000376-1575043694:190594..190637 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:194788..194945 | TCONS_00021010-exon-sc0000376-1510915933:194788..194945 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:194587..194657 | TCONS_00021010-exon-sc0000376-1510915933:194587..194657 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:194093..194127 | TCONS_00021010-exon-sc0000376-1510915933:194093..194127 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:193753..193825 | TCONS_00021010-exon-sc0000376-1510915933:193753..193825 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:193521..193576 | TCONS_00021010-exon-sc0000376-1510915933:193521..193576 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:193017..193143 | TCONS_00021010-exon-sc0000376-1510915933:193017..193143 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1510915933:190594..190637 | TCONS_00021010-exon-sc0000376-1510915933:190594..190637 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:194788..194945 | TCONS_00021010-exon-sc0000376-1491911889:194788..194945 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:194587..194657 | TCONS_00021010-exon-sc0000376-1491911889:194587..194657 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:194093..194127 | TCONS_00021010-exon-sc0000376-1491911889:194093..194127 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:193753..193825 | TCONS_00021010-exon-sc0000376-1491911889:193753..193825 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:193521..193576 | TCONS_00021010-exon-sc0000376-1491911889:193521..193576 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:193017..193143 | TCONS_00021010-exon-sc0000376-1491911889:193017..193143 | Clytia hemisphaerica | exon |
TCONS_00021010-exon-sc0000376-1491911889:190594..190637 | TCONS_00021010-exon-sc0000376-1491911889:190594..190637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000376 | supercontig | sc0000376:190594..194945 - |
Blast
The following BLAST results are available for this feature:
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