TCONS_00021009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021009
Unique NameTCONS_00021009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021009 ID=TCONS_00021009|Name=TCONS_00021009|organism=Clytia hemisphaerica|type=transcript|length=469bp
GATATAAAACAAACTAAAAAACTACTTTTTAATCATCTGTTGGAAGAGGA
AGTTTAGTTTCATTACAATGAATTATTCTCAAGAACAAAGAAGTTATGAT
GACAGATTGGAGTATCAATTCTTGCAAGATCAAGGATGCACCTTTAGCTC
CATGGATGACAGACCCAAGCATGTTATCGCCATTGCTCGTGGAATATGAC
AACAATATCAGATCTCTAAAAGAACAAGTCAAGTCTTACAAAGAAGAGTT
TGAAAACCTGCAAGGAAAATCCAAAACAATTGTAGAAGAGAATAACAGGC
TACATCGTGAGCTGCGAACGACAATAGAAAACCAACTAGAAGTCTTGCAG
CAATCAGATGGAATCAACAATAAAACACAAGTGCAGATTGACCAATTACA
ACAGAAAATGAAGCGAATCAGTGATgaaaaagaaagaattgcTGCAAATT
TCGAAGAATGTAACAGGGA
Run BLAST on NCBI

transcript from alignment at sc0000376:190594..194921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021009 ID=TCONS_00021009|Name=TCONS_00021009|organism=Clytia hemisphaerica|type=transcript|length=4328bp|location=Sequence derived from alignment at sc0000376:190594..194921- (Clytia hemisphaerica)
GATATAAAACAAACTAAAAAACTACTTTTTAATCATCTGTTGGAAGAGGA
AGTTTAGTTTCATTACAATGAATTATTCTCAAGAACAAAGAAGTTATGAT
GACAGATTGGAGTATCAATTCTTGCAAGATCAAGGTTGGTTTTGTGTATC
TTTTCTTCGTCCAAGATTTTGAAAATCAATTGTTTAATTCACTTCAATTT
GACTAAAGCACCTGGATAGGAAGGGTACATTGAGATGTAAAACTTAAAAT
AAATGTTGTTTTAGTTCGCAGGTTAACGGCTGTGGTTAGAGAATACCAAC
GAAGATATCTCCCAATAGAAGAGAGAACTGTCGAGGTATTGCATGTGGCT
TTGAACCATTTTTAGCATTTTATTAAGTAATGATTATTTTGAAAGCATTG
TTTAACTCTTGTTACTAGAAAAAAAGAATTCCAAGGAGCTGGGAACATTT
TTAATTACAATTTTTAGAGCAAAGTAGCTGAAGATGTGTTCAAGTATTTT
TAAAAATTAATAAAAAATCTCCTGATTTTTCATTGTTTTCCAAATCTTTC
AGAAGGAGCCTTTAAAAATTATACACCCAATTAAAATTTCTAGTATAAGT
TAATTTATATAAAGATTTTAAATAGGGCTAAAACTTGCAAAGATTGGTAT
TGTGATTTTTAAAACAATACATATTGCTAAAAGATTCCTTTTCTTTTTCG
TGAACTAGGAGAAAATATCAAATCTTTTTTTTCATGAATATTTGTACACA
AGTTGATAAGATAAAAAATTAATATGTCATTAATTGATTTTTAGGATGCA
CCTTTAGCTCCATGGATGACAGACCCAAGGTAAACAGTTAAGATTGTTTT
GGATAGTAAGGAAAGTGCCTTTTTTGAGTAAATCAAGATTTTAATCTGCA
TTCCACCTTATAAATTTACAATAAGGTAACTATTGACACACTCGTCCAAA
GAGTGTTAAGCAATAGGAAACGATTACTCATCTTTATTATAATATTATTC
CAAAATCAAACTTGAGAATCATTCACTTCAAGTTAGATTGTAAACTGATT
TTCTTTGGTGAAAAATGAAATTCTCTTTAAAATATTTTCTTGATAGCATG
TTATCGCCATTGCTCGTGGAATATGACAACAATATCAGATCTCTAAAAGA
ACAAGTCAAGTCTTACAAAGTGAGTAGCTACTTTTTACTCTTTGTTGTCA
TTTGAGGTTTAGGCTCTTGATTTGACCCAGGGGTTTCGGAACAATCGACT
ATTTTAACCTCTGACTTATCAATAACCCTCCAGATTTTGACATGTCTTCT
TTAATAAAGTTCTTTCTTTGTAATTATCTTTTTGTGTATTTCCAGGAAGA
GTTTGAAAACCTGCAAGGAAAATCCAAAACAATTGTAGAAGAGAATAACA
GGTTACTGTATTATACATATTTTTCAATTTCTTATTCTTTACAGTTTCCA
TTTAAGTGTCTGTTGTAATCATTTGCTCCCCCTAAGCTGACAAAATGGCC
ATATATGAAAATTGTTTATCCTATACTTCAAANCTAGATTCTGTTGTAAT
CATTTGCTCCCCCCTGAGCTGACAAAATGGCCATATATGCAAATTGTTTA
TCCTATACTTCAAAATGCTCAAAGTATTCTGACTTTGATTGATTTCTGTT
TATAGCCAGGCTGAAGCTATGACTCAGAATTTAAAAAAATTCAAAGAAAT
CGCGTGTTTTAATTTTTTAGTTTAAACGATTTTGGAACTAACCTTGTTTA
TAATCTTTCATTTACATTTTTATGACAGGCTACATCGTGAGCTGCGAACG
ACAATAGAAAACCAACTAGAAGTCTTGCAGCAATCAGATGGAATCAACAA
TAAAACACAAGTGCAGATTGACCAATTACAACAGAAAATGAAGCGAATCA
GTGATGTAAAACATTTATTGGTTTTTTACCTTTACTTTTTTCGCCTCAAT
AGTGAGATAATCTTGATGTACTGATGTACTGAAAGAGCTTCCATTAAAAA
TCATATATTTCTATGAAAAGTTGAAAATTAACATGTCGGCTCTTGTAGGG
AGGTTTGTGTGTTGAGTAATACCGGGTGCACCAAAAAAAAGTATACAACT
TTGTCGAGATATTGTGAGCTTCAGGATTTATTTTTTTTTTTATTGTATAG
AGGATGCTCTCACTTGAATTTTGAGCTAATATACATTAAATTTGAAAACG
TAGCTCAAAAATTATTTCAAAAAAACTGACTTTTTTTTAATGTCGAAATT
TCAAAAAACCATCAAAAACAGCGAGCAAACTTTTCTCTTGACACTTACCT
TGTTTACATATAAAAATACCAAAAAATGCAACTGTGTTCATCAAAACTCG
TCACGGAATTTAAGAATATGGTAAAACAAGCTATTCCCATGTAAGATGAT
ATTTTTGGAAAAGCTGAAATTTTTTTGGAAATCTCCAAGGTTTTGATGTT
ATGCTATGTGAGAAAATTTTTGAAAAAATAGATCACCATTCCTCGACTAG
TTGTTTAAAGAACTTGGGTCTGCATTGAGTTTGATGGTTTTGAAAATGTT
CATGACGTGCAAATAAGATGGACAAACTGTTGGAAAAATATAAGCGGAGA
GAAAAAAGAATAAAAGAAACAATGAAATAGTTTTTTTGTTATTTTGTCTT
ATTTATAGCGTGATTGCTGTTTTTAATGATTTTTTGAAATTTCGACATGA
AAAAAAGTTAGTTTTTTAGAAATAACGTTCGAATTGCTTTTTCTAATTTA
ATGTATAATAGCTCAAAATTCAAGTTAGAGCATCCTCTATACAATAAAAA
AAGGATGAACAAAAAATTTAAATCCTGAAGCTCACAATATCTCGACAAAC
CTGTATACTTTTTTTGGTGCACCCGGTAGAACTGGGGGCAGAGCTGATAG
GTTACAAATATTTTAAATTATGTTAAAAATCTATGCTGTGGGGAAGGTTT
TGACCCCTCTTTAAAAATGTTTTTGCCTGCTGCTCAATAAATTTATTGGG
AATTTACATACAAAATTTGTGAAGGTGGGGGCGTGGGGTACGTTTTTAAA
ATTTAGCCGAGGGCTATTTTCTTACTCCCCCTGAAAATGCTGGAGGTTTA
AATAGGGCAAATGTGCTGACTATCCTGCTAGTGGTGGATCAGGGGGGGTC
AACATCCAGATACCAGACCCATAGCCGGGTGGTGGTGTCTTTTTTTCCTT
TAAAAGTCTGAAAAGTCAATTGGTATTGATGGGGTGGGTCCCCCTTTTTT
TAGAAAAAGAGTTATCCTCAGTTGGTATTGATACCAAAATAGGGGGTGGG
TACCCCTTTTTTTAAATAATATGATTCAGAAAGTTGGTATCCATATCAAA
ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGTATTGGTACTAAATTAGGGGGTGGGTCC
CATGATATTTTGTCAAATTCAAAAAGTCATGTTGGTATCGATACCAAATT
AAGGGGGTGGGTCCCCCATTTTTCTGAAAATTATGATTTTCAAGTTGGTA
TCGATACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAATTATGAT
TTTCAATTTGGAATCGATACCAATTTTGGGGTGGTGGTGTTAACTTAGCT
CAAAAGGTCAAAAGTCAGGTTTTTGGGCTATGGGTTGGTATTATAAATGT
TGACCCCCCCCCCTGGGTGGATAACAGACAAACATAATAGACTTTTGTGT
CGATTTTAGCAAACTTTCATCTCTTTTTTTACAGGAAAAAGAAAGAATTG
CTGCAAATTTCGAAGAATGTAACAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011781XLOC_011781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021009-exon-sc0000376-1575043694:194788..194921TCONS_00021009-exon-sc0000376-1575043694:194788..194921Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1575043694:194093..194127TCONS_00021009-exon-sc0000376-1575043694:194093..194127Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1575043694:193753..193825TCONS_00021009-exon-sc0000376-1575043694:193753..193825Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1575043694:193521..193576TCONS_00021009-exon-sc0000376-1575043694:193521..193576Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1575043694:193017..193143TCONS_00021009-exon-sc0000376-1575043694:193017..193143Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1575043694:190594..190637TCONS_00021009-exon-sc0000376-1575043694:190594..190637Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1510915933:194788..194921TCONS_00021009-exon-sc0000376-1510915933:194788..194921Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1510915933:194093..194127TCONS_00021009-exon-sc0000376-1510915933:194093..194127Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1510915933:193753..193825TCONS_00021009-exon-sc0000376-1510915933:193753..193825Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1510915933:193521..193576TCONS_00021009-exon-sc0000376-1510915933:193521..193576Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1510915933:193017..193143TCONS_00021009-exon-sc0000376-1510915933:193017..193143Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1510915933:190594..190637TCONS_00021009-exon-sc0000376-1510915933:190594..190637Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1491911889:194788..194921TCONS_00021009-exon-sc0000376-1491911889:194788..194921Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1491911889:194093..194127TCONS_00021009-exon-sc0000376-1491911889:194093..194127Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1491911889:193753..193825TCONS_00021009-exon-sc0000376-1491911889:193753..193825Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1491911889:193521..193576TCONS_00021009-exon-sc0000376-1491911889:193521..193576Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1491911889:193017..193143TCONS_00021009-exon-sc0000376-1491911889:193017..193143Clytia hemisphaericaexon
TCONS_00021009-exon-sc0000376-1491911889:190594..190637TCONS_00021009-exon-sc0000376-1491911889:190594..190637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:190594..194921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0066	0.989206	0.973018	0	6.42113	8.02819	0.248587	9.82829	0	0	0	1.78971	0	0.637669	0	0	0	0	1.02632	0.946675	0	0.64802	0	0.934971	2.59851	3.70231	0	0	0	0.904486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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