TCONS_00020996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020996
Unique NameTCONS_00020996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020996 ID=TCONS_00020996|Name=TCONS_00020996|organism=Clytia hemisphaerica|type=transcript|length=3894bp
tttatagatTAAAGAACGAATTGAAATCGTTGAAAAAGAAAGGCATGGGA
TATCTTCGAGGTGCCGAGAACGATTTATCCAACTTCTCAAAATTCGTTCA
AAAAGCAGACACCATTTTGAAGAAGCTAAGAGTGAGTTCCTCAAAGTTGT
CAAGAGATTCAAACGATGGTATCTTTCAAGTCGAAGAGAAGCCAAAAGAA
AGTGAAGCAACGCTGTTGCCCTCTGCTAGATATCATCCCGAAACCATATT
ACAACATTGTCGATTCTTACTGCCTCTttccaaaaaacgtcaaaacttcg
TTAAAGAAATGTTACGTTCCACTGAACGCGCGGCACCTAGCGTCAAACCT
ATCATTCGCGTCGATCGAAGGGTGCCAGTCAACGAGAGATACAAACACGG
TCAACCGTCCACTGTTTTCATGCAGATTTTCTCgtcactcaaaaacaaag
atttcTTACATTATCgATGGAATAAAAAATCGTACAGTCAATGGTGGGAA
GTGAAATTCTACGGCGAAGGGATCATTGACCAAGGTGGTGGATTCCGTGA
CAGTCTAACAGAGATGTCTGAAGAACTTTGTCCTCCACTACTCGACCAAG
AACACTGTCTTCCATTCCTTGTGAGAACACCCAATCACGTGACAAGGGTT
GGTGAACACATGGATTGTTTCACTTTGAACCCAAGTTGCCGAAACTTTGA
AGCTTACAAATGGCTTGGTCAATTATTCGGAGCATGTTTTCGAACTGGAG
AGACGTTACCTTTATCTTTACCTCCGATGCTGTGGAAGATGTTGGTTGGT
GAACACGTTTCTTGGAAAGACGATTTCATTCATATCGATGATGCTGCTGT
CAGAAATACCGACGGGCTTGCTAATTTGGAAGCAGACGCATACAAAGCAT
TGAATGTGGAACAGACATACTCCACCATGCTCAGCAACCAAAAAGAAATC
GAACTCCTCCCTGGTGGTTTCGATATGGTAGTGCAATGCGAAGACCGTAC
AAAATATTCAGAAATGGTCCGAAAAGCACGGATGATGGAGAGTATAGAAC
AGCTGAAAACATTACGAGGAGGTTTATTGACCGTCCTTCCAGAGCCCGTT
CTCTCCTGTTTAACTTGGAGTCGTCTTGAACGTGGTGTCTGTGGCAACCC
AAACATCTCTGTGGCTGATCTCAAAGCAAATTGTCGTTATGGTGATGGTT
TGTCATCATCCTCACCAAGCGTCAACCACATGTGGGCCGCTCTTTCCACT
TTCACCGACGAAGAACGGAGCCGTTTCTTACGTTTCATCACCGGCCGAAA
ACGATTACCCAGTCCTTTCATCGTTTTCCGAGCATCGTCGGAAGGCGGTA
CACTTTCTCAGTCACTGAATTCAATCTTACCGAGCGCAAGTACCTGTGGT
AGTAATTTGTTCTTACCGGAATACACGACTGCTGAAATTGCGACTGAGAA
ATTAAGGTATGCCATTTATAATTGTATAGCAATTGACACCGATACAAGCC
CTTGGTAAGTCCGTccccttatttttcttttgtacataaattatcaaaat
atattcCCTTGTTCAGTACGCCCATTGCTTGGGCCAACCTACATTAGAcc
ctcgcttattcgaacttctattattctatTATTCGATTTTTTCTATAAGT
CGAACTTATtcccagtccccgtcaaggagaaactcCCTTAATAACTGTTA
TTACATAGGTTATAATTTAGTTGACGAGATCTTCAATGATGAATCCTCTG
TTCGATTACAGCCATTATTAGGAGTTGTTCATTCAAAGGTCTATTTTCAA
GTGTCTATGGTATGAATCAAATCTTTCGGATGTTTTTTATGTCGCTCTAG
TAAAGGTCTAATCAACAACTCTACCTCAAAACCAAGCTCGATTCTATTTA
GAGCTCGGACCAATCCTTATCTTTAAATGACATTATTTTGATACTGtaat
aatactttttttttagagaagcttgaatttttttatagattaggtattat
catgtttttttttagtttcttaTGGAacttttttggatattttttggaat
taattttatttttacccTCTTACCATTACTGTAACCATCTCATCTTCATA
TCATGAAAACCCAATCCTAGGTATCCTGAAATTCTTTTGCCACAGTTTAT
ATTTGGGTTATTCAGTCATTGATTCCATTGCTATCATTTTAAAGGTGTTT
GCTCTCCATATCTCTAATATCAACATATTGTTGtcgacaaaatattttga
ttacgacagatttttattgcatttttttttatCCCTTTTAGTACAACCTT
TATCTCTCagcattattttttgtttacttaaaaatgtaaaaagataatta
aTCGAGGTATAATCATCATCATAATATTCATTACTGCTTATTTAAGCTAT
ACTATCTCAATAGTAACCTACGATCTGTCAGGAAATCTGccttgaaaaat
taaatgatggtaattcttggaaattttagaattaaTCAAGTAAGCTTTAG
TTGATATCACAATTCAGTGGAATTTCGCCGATTCGAACTTTTTTTTGAAC
AAATCCCCAGTTAAAAAGGCGAAACCttaattaaatattttctataattc
gaatctgtTTGCGGTTGAATTAAATTTAACCTTTGAAGTTCGAATCAGCA
AAAGTCCACTGTATCTATTTCTTCTacaagaaaactaaaaatatttgcAT
ACAAATTCAATAACTTGTGCTCTTTTTAAACTAATATTACATAcacattt
cattttttgaaagttaaaaattttactcatAAAACAGCTATTTacaaatc
aagtttttgaaaccTATATCTTCTCATTCTATGCATAACAATACGATTAA
TTAAATCGATAAGAAAATTTTAGGGAgaaattaaaagcaacatttaCTAC
ATTTGGTCATTTACCTAATCGGCCCTTCTACGACCGGCGGCCGCTTTTAC
GACGGTCCTTATTGCACTAAAGCTTACTTTCCACTTTTGATTCCGATTCC
TTACGCCAGCAACTAAATATTAACGCCAATAAGAGCCTACGTAAAAAGGT
CTGATAAGGTAGTCAATGTATTTATTTTATCgtgcaaaaaatataaattg
atagTTTATTTAATATAAATGATTCTTTTTAGAACTTGAACACTTCTTGA
GCGGTACTTTCTTCTTTCGCCGTTCTCTTTGTTGACCGGATTGTCCAGTA
GAGTTGCTTCATTTCCGATTTCAAATCGGAACGAAACCGCAGCTTAcgaa
tttgatattcttttaATCAACTCTTCAACCATTATCATTATCAATCATTA
TCAACACGTCAAATGTCATTTTGCTGTTAAAAATAATGTTGATAGCAATG
TTTAACTCGTTTATGCCATAGTTTCTTGTTCTGCAGTGTGCTCTTTTAAC
GTTTGTTGCGAGGTAGTTTTCGAGCTTGGTTGCGGTGCAGGGGAAACACG
GATAGGTCCGATACCGATAGCGGACATTGCTGATTGTTTTCCTTTCttcc
atttttcaaagaatccaAGATCTTTGGACATGATTTCGTGATAACGGATT
TTATTCTTCAGTTCTTCTTCGTTGTTTGTCTTTTCACGAAGCCATCCGTC
CACACCGAATGAATAACCTGAACAAAGGAAAAAGACATCTCTTTTAAAGT
ATTGACACCGCTATCTTATCTAAAGACGTCTTTTTTAAAACGGGGTTTAC
AGCTCTAGCGTCTCAAACGGACTTTCGTCTTCAAAAAGGCTTTTCTGTTT
TAgaattcagcaaaattcatcaaattattgaaaatcgTGTCTGATTTATG
TTGTTGAGTCCATTTTCCGTCTGCTATGGAAAACTTTGCTGTGACCACGG
TTTTAAAGTGTGGATCCCGCTGTCTTATCAACCAGCACACTTTG
Run BLAST on NCBI

transcript from alignment at sc0000376:45098..52100-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020996 ID=TCONS_00020996|Name=TCONS_00020996|organism=Clytia hemisphaerica|type=transcript|length=7003bp|location=Sequence derived from alignment at sc0000376:45098..52100- (Clytia hemisphaerica)
TTTATAGATTAAAGAACGAATTGAAATCGTTGAAAAAGAAAGGCATGGGA
TATCTTCGAGGTGCCGAGAACGATTTATCCAACTTCTCAAAATTCGTTCA
AAAAGCAGACACCATTTTGAAGAAGCTAAGAGTGAGTTCCTCAAAGTTGT
CAAGAGATTCAAACGATGGTATCTTTCAAGTCGAAGAGAAGCCAAAAGAA
AGTGAAGCAACGCTGTTGCCCTCTGCTAGGTATGTACGCGAGTTTGCGAG
TTATGTATTTTGCACTTATGAGGACGGTGGAGTGACTGAAGCAATTTGGA
ATAACCCACAGTTTTGACCTGCAAAATCAAGGAACTGTGAAAGTGTCGTC
GTTTTCAACCAATTAGGATCTAGACAAATCAGAAGCAGACCGTCTCTGTC
GCTGAAATACACAGATACATAAACTCACTATAGAGTCTCTTCTTCTCTCA
AAAATGTTTCCCATGATTTATTAGCATCCGTTAACGTCTCCGTCTAACCA
ATAAATGAAACTTAAAAATTCTCATCCTGAAAATTTATAGACCATAACAA
CAAGTCATTGTTAGCATTCTAAAGTCTTAACCTTTCAAGCCCGAAAGACG
TATCTGATGCGTCTTGCATACGTTCCGAAAAACGTATCTGATACGTTTTG
AAGATGACCTTTATATAGAGATACGGTAAAACCGATTAAAAAATCGGAAT
CAGCTTGAAATTTTCGATAAGAAACAATCGGGGTTTGTTTTGGTATGACG
CAACATTTTTCAAAAATAGAAAAGGTTAGACCAAGAATTGTATTACCTAA
CTATAAAGGAACCTTCTAAAGAAATAAGTAAGTGTTTTAATTAATTTTTC
AGTTCTCTATAATTTTTTGAAGTTTTGCACCAAAAATGACTTTTTCGCGA
CATTGATTTTTCATATACCTTTTGTCTGGCTTCATAATTTCTGTCCAAAA
TTGTTTGAAGTACTCAGTTAAACATATTTAGAAAGGGGAAAGGTAGGGCT
TTCCAAAAATATAAGGGTTCTTTTCTGAAGTTAATTTTTCAAAAAGTTAT
AACGGTTATCGTGAAAATTGCATTTTCATCAAAAAACGTTGCGCGCAGAT
GGGCTGAAGATAGAAAAATGTTGCCCGTTGGAAAGGTTAAAGAAAATCTT
CAATTTTAAGCCTGAAATGAGTATTTTCGTGAAAAAGGAAGATCGTAATC
TATTTTAACTGTTATCTTTTCTCATAGATATCATCCCGAAACCATATTAC
AACATTGTCGATTCTTACTGCCTCTTTCCAAAAAACGTCAAAACTTCGTT
AAAGAAATGTTACGTTCCACTGAACGCGCGGCACCTAGCGTCAAACCTAT
CATTCGCGTCGATCGAAGGGTGCCAGTCAACGAGAGATACAAACACGGTC
AACCGTCCACTGTTTTCATGCAGATTTTCTCGTCACTCAAAAACAAAGAT
TTCTTACATTATCGGTATGTTTTTCTTTCTTGACTTTTGATTCCTCAACT
TTTTCTGTAATTGTTTTTTTAACAAGCACTTTTTGTTGACGAAGATATAT
CGAAAGGAGTTTTTTTAATAACAAAGTTTGCCGAAAATCCATATCACTAT
CAGGTGGTTACTAAAGATTAAAGCTCTATTTACATGTAAAATAATAGTTA
CCTTTTCTGATTCAAACGCACAGATGGAATAAAAAATCGTACAGTCAATG
GTGGGAAGTGAAATTCTACGGCGAAGGGATCATTGACCAAGGTGGTGGAT
TCCGTGACAGTCTAACAGAGATGTCTGAAGAACTTTGTCCTCCACTACTC
GACCAAGAACACTGTCTTCCATTCCTTGTGAGAACACCCAATCACGTGAC
AAGGGTTGGTGAACACATGGATTGTTTCACTTTGAACCCAAGTTGCCGAA
ACTTTGAAGCTTACAAATGGTGGGTTGTTGCCTGACGAAAATCATTTCTT
ATCCGTGTGTTTCATATTAAACAGGGCATATTATAGAAAAATAACTTGAG
TTTCTATAGATAATCTATCTATTCCTTGCACATGCCCTTACTAGAATTGA
TGTAAAATGTAAAATGAAAAATTTTGATAGAAACTTTTTTTAAGTTCTTT
GCGGTAAGCTGTTTGAAAGTATTATGAATGTTTATCTTTTGTCAGGCTTG
GTCAATTATTCGGAGCATGTTTTCGAACTGGAGAGACGTTACCTTTATCT
TTACCTCCGATGCTGTGGAAGATGTTGGTTGGTGAACACGTTTCTTGGAA
AGACGATTTCATTCATATCGATGATGCTGCTGTCAGAAATACCGGTGAGT
AACAAAGGATCTTTTCATGTCTCCAACTACTTTTTTCTATTCAAAATTTT
ATTAAGTTTTTTTTTTTTGAAAAATCCAACCCGTGCCTTTTTAATGTTTA
ATGCTTAAGGTCAAATCTCTTGGGTTCAATTTCGTTGGTCATTATTTTGA
ATTATTTCGTGTCTATTTAATTCCGCGAGCAGACTTGAAAATTGTCGTTT
TCTGCCAATAAATAGAGGATTTAGACTTTTTTTTCGCCGAAGAATGTGTG
AAATGTCCCGGACATATTTCGCTTGAATTCAATTGTGCGATACGGCGAAG
GGGAGTTTTTGCGCATAGTTTATCCGATCTTAAAAGCAAAAGACAAACAC
CATTGATACGCTGAATTAGCCTGTACCAAACTCTTCTTCTTCAAAACATG
TTGGTCTTTTCGTTTGCAGACGGGCTTGCTAATTTGGAAGCAGACGCATA
CAAAGCATTGAATGTGGAACAGACATACTCCACCATGCTCAGCAACCAAA
AAGAAATCGAACTCCTCCCTGGTGGTTTCGATATGGTAGTGCAATGCGAA
GACCGTACAAAATATTCAGAAATGGTCCGAAAAGCACGGATGATGGAGAG
TATAGAACAGGTGATTACACCGATGTGTCTTTTTGAAAAAGCTTTTTCAG
TATTATTCGGTTTTGAAATTGTTTTCAATTGTTTGATGACCAAAAATAGC
CTGGGGTTGATGGCTCGTCTTAATATCCTTAACTTAGTGGAAATTGAAAA
TTTTGAATATAGATACACGTTTTTTTTTTATTAGAACACCTAAAATTTGG
CTGAGCCTGGATGTGCTTATTTTTTTAGCAATTTTCAGCCTAAAATGTTC
TTAAATGCGTTCTTAATTTTTCAGACTACTCTAAATCGACAATATGAGAC
AAAATAAAGAGCACTTAAATTTGACAAAATTTGGACAATATTTGGCTCTT
GACTTTAGAAGATCCACCCCTAAATTTGGTTAAAACTGCTTAAAAAGAGG
AAAAAATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGT
TCTTAAGATGTTCTTAATTTTTCGACGAATTTCAGCCTATATGTTCTTAT
AAACTAGGTTCTAATAAAAAAAAAAACGTGTAATACTGTGCTAAAAGTAC
TTTCGTCTCAGCGAAGTCTACAAAGAGGTTCTTCCGTCTCAAGATTCTGT
ATAATTCACAATAATTTCAAGAACATGTGCTATTGACAGTTTAAAATCCA
CTTTCGTCTCAGACGAAAATCACAGTGTGAAAAAAAAAACATGTTTGCAT
TTATAAGCCTACTGACTAAACGATTCTTCTTTCTATCTTTCAGCTGAAAA
CATTACGAGGAGGTTTATTGACCGTCCTTCCAGAGCCCGTTCTCTCCTGT
TTAACTTGGAGTCGTCTTGAACGTGGTGTCTGTGGCAACCCAAACATCTC
TGTGGCTGATCTCAAAGCAAATTGTAAGAAATTTCACATGATGTCTGACT
TTAGTTGACTTTCTATATCTCGAACGTCAAGATTTTCTTCGAATTTAGAG
ACGAAACTTGTCAGCTTTGTAATGTTTGCTATTCAAACAATATATTGTAG
TAGTCATTGATATTGAGATGGATATTTGAAGGCATTTTATCGCTAATAGT
CTATTTAACGATATGGAGTTTTGACGGACGCAAATTAGCCTCAATTGTTA
TTAGCTGTTGTTTTCATTGGCTTTGTCCAGTATTTCATTATATATCATTT
TCATTGTTTTGTAGGTCGTTATGGTGATGGTTTGTCATCATCCTCACCAA
GCGTCAACCACATGTGGGCCGCTCTTTCCACTTTCACCGACGAAGAACGG
AGCCGTTTCTTACGTTTCATCACCGGCCGAAAACGATTACCCAGTCCTTT
CATCGTTTTCCGAGCATCGTCGGAAGGCGGTACACTTTCTCAGTCACTGA
ATTCAATCTTACCGAGCGCAAGTACCTGTGGTAGTAATTTGTTCTTACCG
GAATACACGACTGCTGAAATTGCGACTGAGAAATTAAGGTGGGAAATATA
ATTCATTGTATGATTCTAATAGATTACTATGAATATGAGTACTGATCCCT
CGGATTAAAATTTGCAAAAGACTAAGATATCCCGTTACTGAGGTTTTGTA
ATCAAGAAGACACAGTTTATTAAGCGATTATTTTGACATCTTAAATTGAC
TTCGTATAGGCCTGTACAAAGCCAGTCAAAGATTGCATGGTAATATTCGA
TTTTCTCACATTTAGGTATGCCATTTATAATTGTATAGCAATTGACACCG
ATACAAGCCCTTGGTAAGTCCGTCCCCTTATTTTTCTTTTGTACATAAAT
TATCAAAATATATTCCCTTGTTCAGTACGCCCATTGCTTGGGCCAACCTA
CATTAGACCCTCGCTTATTCGAACTTCTATTATTCTATTATTCGATTTTT
TCTATAAGTCGAACTTATTCCCAGTCCCCGTCAAGGAGAAACTCCCTTAA
TAACTGTTATTACATAGGTTATAATTTAGTTGACGAGATCTTCAATGATG
AATCCTCTGTTCGATTACAGCCATTATTAGGAGTTGTTCATTCAAAGGTC
TATTTTCAAGTGTCTATGGTATGAATCAAATCTTTCGGATGTTTTTTATG
TCGCTCTAGTAAAGGTCTAATCAACAACTCTACCTCAAAACCAAGCTCGA
TTCTATTTAGAGCTCGGACCAATCCTTATCTTTAAATGACATTATTTTGA
TACTGTAATAATACTTTTTTTTTAGAGAAGCTTGAATTTTTTTATAGATT
AGGTATTATCATGTTTTTTTTTAGTTTCTTATGGAACTTTTTTGGATATT
TTTTGGAATTAATTTTATTTTTACCCTCTTACCATTACTGTAACCATCTC
ATCTTCATATCATGAAAACCCAATCCTAGGTATCCTGAAATTCTTTTGCC
ACAGTTTATATTTGGGTTATTCAGTCATTGATTCCATTGCTATCATTTTA
AAGGTGTTTGCTCTCCATATCTCTAATATCAACATATTGTTGTCGACAAA
ATATTTTGATTACGACAGATTTTTATTGCATTTTTTTTTATCCCTTTTAG
TACAACCTTTATCTCTCAGCATTATTTTTTGTTTACTTAAAAATGTAAAA
AGATAATTAATCGAGGTATAATCATCATCATAATATTCATTACTGCTTAT
TTAAGCTATACTATCTCAATAGTAACCTACGATCTGTCAGGAAATCTGCC
TTGAAAAATTAAATGATGGTAATTCTTGGAAATTTTAGAATTAATCAAGT
AAGCTTTAGTTGATATCACAATTCAGTGGAATTTCGCCGATTCGAACTTT
TTTTTGAACAAATCCCCAGTTAAAAAGGCGAAACCTTAATTAAATATTTT
CTATAATTCGAATCTGTTTGCGGTTGAATTAAATTTAACCTTTGAAGTTC
GAATCAGCAAAAGTCCACTGTATCTATTTCTTCTACAAGAAAACTAAAAA
TATTTGCATACAAATTCAATAACTTGTGCTCTTTTTAAACTAATATTACA
TACACATTTCATTTTTTGAAAGTTAAAAATTTTACTCATAAAACAGCTAT
TTACAAATCAAGTTTTTGAAACCTATATCTTCTCATTCTATGCATAACAA
TACGATTAATTAAATCGATAAGAAAATTTTAGGGAGAAATTAAAAGCAAC
ATTTACTACATTTGGTCATTTACCTAATCGGCCCTTCTACGACCGGCGGC
CGCTTTTACGACGGTCCTTATTGCACTAAAGCTTACTTTCCACTTTTGAT
TCCGATTCCTTACGCCAGCAACTAAATATTAACGCCAATAAGAGCCTACG
TAAAAAGGTCTGATAAGGTAGTCAATGTATTTATTTTATCGTGCAAAAAA
TATAAATTGATAGTTTATTTAATATAAATGATTCTTTTTAGAACTTGAAC
ACTTCTTGAGCGGTACTTTCTTCTTTCGCCGTTCTCTTTGTTGACCGGAT
TGTCCAGTAGAGTTGCTTCATTTCCGATTTCAAATCGGAACGAAACCGCA
GCTTACGAATTTGATATTCTTTTAATCAACTCTTCAACCATTATCATTAT
CAATCATTATCAACACGTCAAATGTCATTTTGCTGTTAAAAATAATGTTG
ATAGCAATGTTTAACTCGTTTATGCCATAGTTTCTTGTTCTGCAGTGTGC
TCTTTTAACGTTTGTTGCGAGGTAGTTTTCGAGCTTGGTTGCGGTGCAGG
GGAAACACGGATAGGTCCGATACCGATAGCGGACATTGCTGATTGTTTTC
CTTTCTTCCATTTTTCAAAGAATCCAAGATCTTTGGACATGATTTCGTGA
TAACGGATTTTATTCTTCAGTTCTTCTTCGTTGTTTGTCTTTTCACGAAG
CCATCCGTCCACACCGAATGAATAACCTGAACAAAGGAAAAAGACATCTC
TTTTAAAGTATTGACACCGCTATCTTATCTAAAGACGTCTTTTTTAAAAC
GGGGTTTACAGCTCTAGCGTCTCAAACGGACTTTCGTCTTCAAAAAGGCT
TTTCTGTTTTAGAATTCAGCAAAATTCATCAAATTATTGAAAATCGTGTC
TGATTTATGTTGTTGAGTCCATTTTCCGTCTGCTATGGAAAACTTTGCTG
TGACCACGGTTTTAAAGTGTGGATCCCGCTGTCTTATCAACCAGCACACT
TTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011776XLOC_011776Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020996-exon-sc0000376-1575043694:51872..52100TCONS_00020996-exon-sc0000376-1575043694:51872..52100Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:50637..50873TCONS_00020996-exon-sc0000376-1575043694:50637..50873Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:50182..50427TCONS_00020996-exon-sc0000376-1575043694:50182..50427Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:49807..49955TCONS_00020996-exon-sc0000376-1575043694:49807..49955Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:49191..49381TCONS_00020996-exon-sc0000376-1575043694:49191..49381Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:48328..48457TCONS_00020996-exon-sc0000376-1575043694:48328..48457Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:47763..48036TCONS_00020996-exon-sc0000376-1575043694:47763..48036Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1575043694:45098..47535TCONS_00020996-exon-sc0000376-1575043694:45098..47535Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:51872..52100TCONS_00020996-exon-sc0000376-1510915933:51872..52100Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:50637..50873TCONS_00020996-exon-sc0000376-1510915933:50637..50873Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:50182..50427TCONS_00020996-exon-sc0000376-1510915933:50182..50427Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:49807..49955TCONS_00020996-exon-sc0000376-1510915933:49807..49955Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:49191..49381TCONS_00020996-exon-sc0000376-1510915933:49191..49381Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:48328..48457TCONS_00020996-exon-sc0000376-1510915933:48328..48457Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:47763..48036TCONS_00020996-exon-sc0000376-1510915933:47763..48036Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1510915933:45098..47535TCONS_00020996-exon-sc0000376-1510915933:45098..47535Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:51872..52100TCONS_00020996-exon-sc0000376-1491911889:51872..52100Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:50637..50873TCONS_00020996-exon-sc0000376-1491911889:50637..50873Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:50182..50427TCONS_00020996-exon-sc0000376-1491911889:50182..50427Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:49807..49955TCONS_00020996-exon-sc0000376-1491911889:49807..49955Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:49191..49381TCONS_00020996-exon-sc0000376-1491911889:49191..49381Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:48328..48457TCONS_00020996-exon-sc0000376-1491911889:48328..48457Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:47763..48036TCONS_00020996-exon-sc0000376-1491911889:47763..48036Clytia hemisphaericaexon
TCONS_00020996-exon-sc0000376-1491911889:45098..47535TCONS_00020996-exon-sc0000376-1491911889:45098..47535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:45098..52100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11032	1.07627	0.230199	0.128694	2.04594	1.57304	3.25725	3.53871	1.54952	2.01836	1.31251	0.986901	1.89525	1.82966	1.18673	1.44773	2.07099	1.93581	1.27135	1.85974	2.55881	2.09906	3.91567	3.31918	2.65686	3.37373	1.86266	1.79348	2.43747	2.21243
Blast
[Close]
BLAST of TCONS_00020996 vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.148e-109
Identity = 192/429 (44.76%), Postives = 263/429 (61.31%), Query Frame = 3 
Query:  246 ILQHCRFLLPLSKKRQNFVKEMLRSTERAAPSVKPIIRVDRRVPVNERYKHGQ----PSTVFMQIFSSLKNKDF----LHYRWNKKSYSQWWEVKFYGEGIIDQGGGFRDSLTEMSEELCPPLLDQEHCLPFLVRTPNHVTRVGEHMDCFTLNPSCRNFEAYKWLGQLFGACFRTGETLPLSLPPMLWKMLVGEHVSWKDDFIHIDDAAVRNTDGLANLEADAYK-ALNVEQTYSTMLSNQKEIELLPGGFDMVVQCEDRTKYSEMVRKARMMESIEQLKTLRGGLLTVLPEPVLSCLTWSRLERGVCGNPNISVADLKANCRYGDGLSSSSPSVNHMWAALSTFTDEERSRFLRFITGRKRLPSPFIVFRASSEGGTLSQSLNSILPSASTCGSNLFLPEYTTAEIATEKLRYAIYNCIAIDTDTSPW 1505
            I Q  +FLL LS++R   V + LR +E + PS  P + ++RR+ +  R    +     + VF Q++  LK  D     L YRW  + Y QWWE KF  EGIIDQGGGFRDSL +MSEELCP   D    LPF VRT N     GE  D +  NPSCR+F  Y+W+GQL GA  R  E L L+LP  +WK L GE VSW  DF  +D   V+  + +  ++ + ++     E T++T+LS+Q+ +EL+PGG  +VV   DR+++ ++V+KAR+ ES EQ+  ++ GLL V+P+ VL  LTW  LE+ VCG+P ++V  L+   R+ D    S   V + W AL+ FT+E+RSRFLRF+TGR RLP+   ++        L       LP +STC S LFLP Y +A++  EKLRYA YNC+AIDTD SPW
Sbjct:  439 IKQVKQFLL-LSRQRPGLVAQCLRDSESSKPSFMPRLYINRRLAMEHRACPSRDPACKNAVFTQVYEGLKPSDKYEKPLDYRWPMR-YDQWWECKFIAEGIIDQGGGFRDSLADMSEELCPSSADTPVPLPFFVRTANQGNGTGEARDMYVPNPSCRDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGEEVSWSKDFPAVDSVLVKLLEVMEGMDKETFEFKFGKELTFTTVLSDQQVVELIPGGAGIVVGYGDRSRFIQLVQKARLEESKEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFED-FEPSDSRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYIY-----PDKLGYETTDALPESSTCSSTLFLPHYASAKVCEEKLRYAAYNCVAIDTDMSPW 859
The following BLAST results are available for this feature:
BLAST of TCONS_00020996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HECD31.148e-10944.76E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens... [more]
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