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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020967 ID=TCONS_00020967|Name=TCONS_00020967|organism=Clytia hemisphaerica|type=transcript|length=1612bp
NNATAATAagaaggtcagaatcacaaaCATTTGACTAAGTTATTATATGG
TATAGCAGCAGAAAGATTATTATCATAAAATATAAGtaacctgaaaatga
aaaaaaatcctagATACTAGTTAGGAGAGTTTTACTTCTGTTCCTTCGTT
TTTGACTGTTGTAGGCAACAGCACGTACCTTTTTCTTAGTACGAGTTACA
AGTCTTTCTCTTGCTGTTCGCAACTGCACCTCGCGTTTAGCAATGCTAAA
CCAAGGAATTTCAAGTTCTCTTGGAGCCAGTGAAGGAAGAGGATATCCAA
ATGCACATACAGGAACTATTTCCGAAACTTCCACAGCATAAATACTATCA
CTTTGTTTATTAAGTGTATCAACATGCGAGCTATTGGAACTTTTAAAGGA
TTTTGAGGAAGATACAAATTCAGATGAGCATCCTTGCAACTTTCCTTTCT
CTCTTTCATTGTATTTCTGAACAAGCATTTCATGTTGCCGTTGCTGACGT
GCTTGTTGCAAATCCCAACGTTTCCTTCGTTTTTCTTCTTGCTCTGGTTT
TGAATGTCTTTTATCATACGCAACATCTGATGTGTCTTCTTCCAATTCTT
GTTGGTCAAATGTCTGTATTTTGAAATCACAATTATTTACCAAACGGAAT
GCAGGCACTTGGACTTGCTTTTTattaagtttttcatttttcatttcatt
ttttttgcacaaacttTGTCTTCTCGGTGAATCTAAGTAAGCAACATTag
tctttaaaaagttttcaaaacaaaaccccTTATCGTTACATGATGTGATT
GTTACTGGCAACATATTCAATTTGTCAATTGGAgtacttttatcattttc
agtttTCTTTGCAGACCCAGCTGTAGATAAAACAAGAGGGGATTTTACAA
GAGGTGAAGAAATTCTTGTACGGGTTAACGGTGAACTGTCATCTTGTGAT
GTAGCAACTTCAAGAGAATGTCGTTTCTGGACTGAAATTCTACGTTCCAT
CCTTGAAAGACGTGCTTCAAGTTGTTCCTTGTCTGCACGAAGGGCAATAA
TTTGTTTATCTTTCTCCATAATTGCAAGATGTTGGTGTTGAATTAAATCT
AGTTGCATCAACAGAGTTTCTTTCAGCTGTTTTGCATTAAATTGAAAAGG
TAAATGTTCATCTTTTTCAGACCTGCTTGTAGACTTCTGCACATTGTTAC
TTTCCATTTCATCTGCAGCAGAGGTTGAAAAGTCAATCTTTTTATTATCA
TCTGTTTCATCATGTTCATGATGAATGGCAGGTTGTTCATCGTCCAAAAC
ATTACTGTAATCCATTACTGAGTTCAATGTTTCACATTCAGTTTCTGTAA
CATTGTAATGAGGCATTTGTTCCACATTTTGAGATTGTGGTGcatcataa
aattgttcttcATTTTGCAGTGTCGAAAAatttctttcactttcattAAG
GTTGTTTTGCAGCAAGTCACTACTTGGTTGAACAGTGTTAAGTTGTTCCT
CTTGGGTATTCATATGAGAAAAGGAAGGTAATTGGTCTTCGTTGTTATCC
ATCGAAATACCCATTCTATTTGATTTCCCAAAAGCATTCAAAATATAAAT
TCATCAGCTCNN Run BLAST on NCBI protein sequence of TCONS_00020967-protein >TCONS_00020967-protein ID=TCONS_00020967-protein|Name=TCONS_00020967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MGISMDNNEDQLPSFSHMNTQEEQLNTVQPSSDLLQNNLNESERNFSTLQ
NEEQFYDAPQSQNVEQMPHYNVTETECETLNSVMDYSNVLDDEQPAIHHE
HDETDDNKKIDFSTSAADEMESNNVQKSTSRSEKDEHLPFQFNAKQLKET
LLMQLDLIQHQHLAIMEKDKQIIALRADKEQLEARLSRMERRISVQKRHS
LEVATSQDDSSPLTRTRISSPLVKSPLVLSTAGSAKKTENDKSTPIDKLN
MLPVTITSCNDKGFCFENFLKTNVAYLDSPRRQSLCKKNEMKNEKLNKKQ
VQVPAFRLVNNCDFKIQTFDQQELEEDTSDVAYDKRHSKPEQEEKRRKRW
DLQQARQQRQHEMLVQKYNEREKGKLQGCSSEFVSSSKSFKSSNSSHVDT
LNKQSDSIYAVEVSEIVPVCAFGYPLPSLAPRELEIPWFSIAKREVQLRT
ARERLVTRTKKKVRAVAYNSQKRRNRSKTLLTSI Run BLAST on NCBI transcript from alignment at sc0000374:144103..145714 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020967 ID=TCONS_00020967|Name=TCONS_00020967|organism=Clytia hemisphaerica|type=transcript|length=1612bp|location=Sequence derived from alignment at sc0000374:144103..145714 (Clytia hemisphaerica)
NNGAGCTGATGAATTTATATTTTGAATGCTTTTGGGAAATCAAATAGAAT
GGGTATTTCGATGGATAACAACGAAGACCAATTACCTTCCTTTTCTCATA
TGAATACCCAAGAGGAACAACTTAACACTGTTCAACCAAGTAGTGACTTG
CTGCAAAACAACCTTaatgaaagtgaaagaaatTTTTCGACACTGCAAAA
TgaagaacaattttatgatgCACCACAATCTCAAAATGTGGAACAAATGC
CTCATTACAATGTTACAGAAACTGAATGTGAAACATTGAACTCAGTAATG
GATTACAGTAATGTTTTGGACGATGAACAACCTGCCATTCATCATGAACA
TGATGAAACAGATGATAATAAAAAGATTGACTTTTCAACCTCTGCTGCAG
ATGAAATGGAAAGTAACAATGTGCAGAAGTCTACAAGCAGGTCTGAAAAA
GATGAACATTTACCTTTTCAATTTAATGCAAAACAGCTGAAAGAAACTCT
GTTGATGCAACTAGATTTAATTCAACACCAACATCTTGCAATTATGGAGA
AAGATAAACAAATTATTGCCCTTCGTGCAGACAAGGAACAACTTGAAGCA
CGTCTTTCAAGGATGGAACGTAGAATTTCAGTCCAGAAACGACATTCTCT
TGAAGTTGCTACATCACAAGATGACAGTTCACCGTTAACCCGTACAAGAA
TTTCTTCACCTCTTGTAAAATCCCCTCTTGTTTTATCTACAGCTGGGTCT
GCAAAGAaaactgaaaatgataaaagtacTCCAATTGACAAATTGAATAT
GTTGCCAGTAACAATCACATCATGTAACGATAAggggttttgttttgaaa
actttttaaagactAATGTTGCTTACTTAGATTCACCGAGAAGACAaagt
ttgtgcaaaaaaaatgaaatgaaaaatgaaaaacttaatAAAAAGCAAGT
CCAAGTGCCTGCATTCCGTTTGGTAAATAATTGTGATTTCAAAATACAGA
CATTTGACCAACAAGAATTGGAAGAAGACACATCAGATGTTGCGTATGAT
AAAAGACATTCAAAACCAGAGCAAGAAGAAAAACGAAGGAAACGTTGGGA
TTTGCAACAAGCACGTCAGCAACGGCAACATGAAATGCTTGTTCAGAAAT
ACAATGAAAGAGAGAAAGGAAAGTTGCAAGGATGCTCATCTGAATTTGTA
TCTTCCTCAAAATCCTTTAAAAGTTCCAATAGCTCGCATGTTGATACACT
TAATAAACAAAGTGATAGTATTTATGCTGTGGAAGTTTCGGAAATAGTTC
CTGTATGTGCATTTGGATATCCTCTTCCTTCACTGGCTCCAAGAGAACTT
GAAATTCCTTGGTTTAGCATTGCTAAACGCGAGGTGCAGTTGCGAACAGC
AAGAGAAAGACTTGTAACTCGTACTAAGAAAAAGGTACGTGCTGTTGCCT
ACAACAGTCAAAAACGAAGGAACAGAAGTAAAACTCTCCTAACTAGTATc
taggattttttttcattttcaggttaCTTATATTTTATGATAATAATCTT
TCTGCTGCTATACCATATAATAACTTAGTCAAATGtttgtgattctgacc
ttctTATTATNN Coding sequence (CDS) from alignment at sc0000374:144103..145714 >TCONS_00020967 ID=TCONS_00020967|Name=TCONS_00020967|organism=Clytia hemisphaerica|type=CDS|length=1455bp|location=Sequence derived from alignment at sc0000374:144103..145714 (Clytia hemisphaerica)
ATGGGTATTTCGATGGATAACAACGAAGACCAATTACCTTCCTTTTCTCA
TATGAATACCCAAGAGGAACAACTTAACACTGTTCAACCAAGTAGTGACT
TGCTGCAAAACAACCTTaatgaaagtgaaagaaatTTTTCGACACTGCAA
AATgaagaacaattttatgatgCACCACAATCTCAAAATGTGGAACAAAT
GCCTCATTACAATGTTACAGAAACTGAATGTGAAACATTGAACTCAGTAA
TGGATTACAGTAATGTTTTGGACGATGAACAACCTGCCATTCATCATGAA
CATGATGAAACAGATGATAATAAAAAGATTGACTTTTCAACCTCTGCTGC
AGATGAAATGGAAAGTAACAATGTGCAGAAGTCTACAAGCAGGTCTGAAA
AAGATGAACATTTACCTTTTCAATTTAATGCAAAACAGCTGAAAGAAACT
CTGTTGATGCAACTAGATTTAATTCAACACCAACATCTTGCAATTATGGA
GAAAGATAAACAAATTATTGCCCTTCGTGCAGACAAGGAACAACTTGAAG
CACGTCTTTCAAGGATGGAACGTAGAATTTCAGTCCAGAAACGACATTCT
CTTGAAGTTGCTACATCACAAGATGACAGTTCACCGTTAACCCGTACAAG
AATTTCTTCACCTCTTGTAAAATCCCCTCTTGTTTTATCTACAGCTGGGT
CTGCAAAGAaaactgaaaatgataaaagtacTCCAATTGACAAATTGAAT
ATGTTGCCAGTAACAATCACATCATGTAACGATAAggggttttgttttga
aaactttttaaagactAATGTTGCTTACTTAGATTCACCGAGAAGACAaa
gtttgtgcaaaaaaaatgaaatgaaaaatgaaaaacttaatAAAAAGCAA
GTCCAAGTGCCTGCATTCCGTTTGGTAAATAATTGTGATTTCAAAATACA
GACATTTGACCAACAAGAATTGGAAGAAGACACATCAGATGTTGCGTATG
ATAAAAGACATTCAAAACCAGAGCAAGAAGAAAAACGAAGGAAACGTTGG
GATTTGCAACAAGCACGTCAGCAACGGCAACATGAAATGCTTGTTCAGAA
ATACAATGAAAGAGAGAAAGGAAAGTTGCAAGGATGCTCATCTGAATTTG
TATCTTCCTCAAAATCCTTTAAAAGTTCCAATAGCTCGCATGTTGATACA
CTTAATAAACAAAGTGATAGTATTTATGCTGTGGAAGTTTCGGAAATAGT
TCCTGTATGTGCATTTGGATATCCTCTTCCTTCACTGGCTCCAAGAGAAC
TTGAAATTCCTTGGTTTAGCATTGCTAAACGCGAGGTGCAGTTGCGAACA
GCAAGAGAAAGACTTGTAACTCGTACTAAGAAAAAGGTACGTGCTGTTGC
CTACAACAGTCAAAAACGAAGGAACAGAAGTAAAACTCTCCTAACTAGTA
Tctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020967-exon-sc0000374-1491911889:144103..145714 | TCONS_00020967-exon-sc0000374-1491911889:144103..145714 | Clytia hemisphaerica | exon |
| TCONS_00020967-exon-sc0000374-1510915933:144103..145714 | TCONS_00020967-exon-sc0000374-1510915933:144103..145714 | Clytia hemisphaerica | exon |
| TCONS_00020967-exon-sc0000374-1575043694:144103..145714 | TCONS_00020967-exon-sc0000374-1575043694:144103..145714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:144103..145714 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029332 | PEHE_dom |
Blast
The following BLAST results are available for this feature:
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