TCONS_00020966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020966
Unique NameTCONS_00020966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020966 ID=TCONS_00020966|Name=TCONS_00020966|organism=Clytia hemisphaerica|type=transcript|length=386bp
AAAAGTAAATATATATTATCTCTAAATTCGGAACCaaagattttcttcga
attGGAGAAAGATTTCAGCTCTTGATATTCACGACATAATCTTTTATACA
GAAACACACGAAAAACACCGGGCGGGCGGGcggattacgtcatgaatatc
aagaattacATAGATTAATTTAAGCTGAAGAGACCAATACttcagttcga
attacagaaagattcgaataatagagattcgaattagagaaagaagTAAC
TGTAACATTTAAcaaaagctttttcacatttatTATTCTATAAGGTGATA
TACCAgattacttttttaaatattttacgcaacgcatttttacattttta
taaaaCACACATTGTATTTAGTTTGCAGCATTGTAT
Run BLAST on NCBI

transcript from alignment at sc0000374:84734..85119

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020966 ID=TCONS_00020966|Name=TCONS_00020966|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0000374:84734..85119 (Clytia hemisphaerica)
ATACAATGCTGCAAACTAAATACAATGTGTGttttataaaaatgtaaaaa tgcgttgcgtaaaatatttaaaaaagtaatcTGGTATATCACCTTATAGA ATAataaatgtgaaaaagcttttgTTAAATGTTACAGTTActtctttctc taattcgaatctctattattcgaatctttctgtaattcgaactgaaGTAT TGGTCTCTTCAGCTTAAATTAATCTATgtaattcttgatattcatgacgt aatccgCCCGCCCGCCCGGTGTTTTTCGTGTGTTTCTGTATAAAAGATTA TGTCGTGAATATCAAGAGCTGAAATCTTTCTCCaattcgaagaaaatctt tGGTTCCGAATTTAGAGATAATATATATTTACTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011756XLOC_011756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020966-exon-sc0000374-1491911889:84734..85119TCONS_00020966-exon-sc0000374-1491911889:84734..85119Clytia hemisphaericaexon
TCONS_00020966-exon-sc0000374-1510915933:84734..85119TCONS_00020966-exon-sc0000374-1510915933:84734..85119Clytia hemisphaericaexon
TCONS_00020966-exon-sc0000374-1575043694:84734..85119TCONS_00020966-exon-sc0000374-1575043694:84734..85119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:84734..85119 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400878 0.19546 0 0.222033 0.854188 0.427195 2.06157 1.93002 2.53359 1.25531 0.203072 1.20142 1.99959 1.38439 0.113816 0.61071 0.601876 0 0.213071 1.33778 0.387592 0.283581 0 0 0.645608 1.53651 0 0.293319 0 0.679991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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