|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020960 ID=TCONS_00020960|Name=TCONS_00020960|organism=Clytia hemisphaerica|type=transcript|length=5724bpRun BLAST on NCBI protein sequence of TCONS_00020960-protein >TCONS_00020960-protein ID=TCONS_00020960-protein|Name=TCONS_00020960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1845bp LDQGSCTMKEGFVYGDKCSRHFNTPASSFDEAVSICQTWDVNATLYMPDDRun BLAST on NCBI transcript from alignment at sc0000374:230150..263289- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020960 ID=TCONS_00020960|Name=TCONS_00020960|organism=Clytia hemisphaerica|type=transcript|length=33140bp|location=Sequence derived from alignment at sc0000374:230150..263289- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000374:230150..263289- >TCONS_00020960 ID=TCONS_00020960|Name=TCONS_00020960|organism=Clytia hemisphaerica|type=CDS|length=138450bp|location=Sequence derived from alignment at sc0000374:230150..263289- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020960 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 69/170 (40.59%), Postives = 86/170 (50.59%), Query Frame = 2
Query: 1997 GFSNWSPWTECTSTC-NGTRLRDRVCY--------ERCSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC--IPANYGGVPCSEIPGSSQDRQPCNTMPC 2473
+S W PW C+ +C GT+ R R+C C G E +M+ C +CPIHG + W SWS C V+CGGG+ +R R C+ PVPQY G C GS S C CP W+ WS W +C + CN G R RTC P + GG C G Q CNT C
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG---GPDSQIQRCNTDMC 4811 HSP 2 Score: 122.094 bits (305), Expect = 2.761e-27 Identity = 83/285 (29.12%), Postives = 127/285 (44.56%), Query Frame = 2
Query: 2000 FSNWSPWTECTSTCNG-TRLRDRVCYE--------RCSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC---IPANYGGVPCSEIPGSSQDRQPCNTMPC----EESYANLVLHI-EVEF-----TEGMTDPNDPEYKIFESNLQAQVTSIYEDGGDVMEG--QVLNVV--CHSLEPGSVVANFTINYASMEMEQFLFFQ--DVIETSQALGKLD 2770
++ W+ W+ C+ +C G R R R C + +C G + + +FC + CP HG S W W C TC GG RR R C++P P G C G C CPVD W W WS C C G R+R C +P GG PC PG + CN C + + +++ +I +VEF +TD + + +I ++A++T++ G M +LN + + E G V FT+ A + E + F ++++ S LD
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVK-GGRPC---PGDTTQVTRCNVQACPGGPQRARGSVIGNINDVEFGIAFLNATITDSPNSDTRI----IRAKITNVPRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHIARGLD 4979 HSP 3 Score: 113.62 bits (283), Expect = 9.868e-25 Identity = 61/170 (35.88%), Postives = 79/170 (46.47%), Query Frame = 2
Query: 1997 GFSNWSPWTECTSTC-NGTRLRDRVCYER--------CSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC--IPANYGGVPCSEIPGSSQDRQPCNTMPC 2473
GFS WS W C+ TC G + R R+C + C G + EM C CP+ G SEW W C +CG G+ R R CN+P Q+ G C G+ + I C + CPV W+ W W +C + C G R R C P +GG C G+ Q CN C
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD---GAETQMQVCNERNC 4697 HSP 4 Score: 111.694 bits (278), Expect = 3.814e-24 Identity = 63/174 (36.21%), Postives = 80/174 (45.98%), Query Frame = 2
Query: 1988 TDLGFSNWSPWTECTSTC-NGTRLRDRVCY--------ERCSGEEKEMEFCGAPHCPIHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC---IPANYGGVPCSEIPGSSQDRQPCNTMPC 2473
D +S WS W ECT +C G + R R C C G E+ C CP+HG S W W C +CG G+ R R CN+P P + G+ C G+ C NCP+ +WA W+ WS+C C G R R C +P YGG C GS CN+ PC
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVP-QYGGRKCE---GSDVQSDFCNSDPC 4754 HSP 5 Score: 102.064 bits (253), Expect = 3.343e-21 Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 2
Query: 2132 IHGGLSEWGSWSNCDVTCGGGSTRRMRACNSPVPQYDGNDCVGSLEDSISCGVSNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC--IPANYGGVPCSEIPGSSQDRQPCNTMPC 2473
+HGG S+W +W C VTCG G +R R CN P+P G C GS + +C CPVD W+EWS+W C + C G+ R RTC +GG PC G++ + CN PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE---GNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00020960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.