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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020958 ID=TCONS_00020958|Name=TCONS_00020958|organism=Clytia hemisphaerica|type=transcript|length=2085bpRun BLAST on NCBI protein sequence of TCONS_00020958-protein >TCONS_00020958-protein ID=TCONS_00020958-protein|Name=TCONS_00020958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp MLIKTEKLVHIKKNSRNFINVVREHYLRDDIPCKSSACYQNCVQPKGLPLRun BLAST on NCBI transcript from alignment at sc0000374:206243..222880- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020958 ID=TCONS_00020958|Name=TCONS_00020958|organism=Clytia hemisphaerica|type=transcript|length=16638bp|location=Sequence derived from alignment at sc0000374:206243..222880- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000374:206243..222880- >TCONS_00020958 ID=TCONS_00020958|Name=TCONS_00020958|organism=Clytia hemisphaerica|type=CDS|length=9900bp|location=Sequence derived from alignment at sc0000374:206243..222880- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020958 vs. Swiss-Prot (Human)
Match: DI3L1 (DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 1.623e-70 Identity = 129/325 (39.69%), Postives = 198/325 (60.92%), Query Frame = 1
Query: 1096 MLIKTEKLVHIKKNSRNFINVVREHYLRDDIPCKSSACYQNCVQPKGLPLLTDEQKTTHYVIPDITCCRKYLEILELKELTNIIFLQSVVQQIKKKAGKRVSKNITGIHKNPLKSSIVFDNEFHQSCYVQRKEGQDLDEWFWKNVYSTAQWFHQHLQQKISIIILTECEEVLKYYGSETPGIFVMSMTDYINGFWPDLNEAKDLMESLSSINDVEELNIGASICKEFHEYFPNQVLEAGIKSGRFFANYLKVNKHRPMMEAFIQKGDGKXXXXXXXXXXXXQVLIHGTAARNRAVDGDSVVVELLPESQWKSRSTSIHQHSESNC 2070
ML K EK++ ++ + +VREHYLR +PC S C Q LL+ + THYVIPD + YLEILE EL IIF+Q+ Q ++ + G+R + + K+ I+F NEF Q CY+ R+ G+ +++W +++Y+ A W++ H Q ++ I+++TE EE ++ YGSET G+FV++ +Y++ FWPDL A +L +S+ E S KE+ E+ P +VLEAGIKSGR+ L VNKHR +EAF++ S ++ +S +LIHG ARNR++ GD VVVELLP+++WK R+ ++ E++C
Sbjct: 1 MLQKREKVLLLRTFQGRTLRIVREHYLRPCVPCHSPLCPQPAACSHDGKLLSSD--VTHYVIPDWKVVQDYLEILEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCILFANEFQQCCYLPRERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETEGVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGAS----SKDSDLVSDILIHGMKARNRSIHGDVVVVELLPKNEWKGRTVAL---CENDC 316 The following BLAST results are available for this feature:
BLAST of TCONS_00020958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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