TCONS_00020956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020956
Unique NameTCONS_00020956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020956 ID=TCONS_00020956|Name=TCONS_00020956|organism=Clytia hemisphaerica|type=transcript|length=550bp
GACcttgaaaacaatattttttctttcataacaTAAAATGTCAATCATTA
TTCTGACTGAATGTGAAGAAGTCTTGAAATATTATGGTAGCGAGACACCT
GGTATCTTTGTGATGTCAATGACAGATTATATCAATGGATTTTGGCCTGA
TTTGAATGAAGCAAAAGATCTAATGGAATCACTTTCATCCATCAATGATG
TTGAAGAACTAAATATCGGTGCTTCAATCTGCAAAGAATTTCATGAATAT
TTTCCAAATCAAGTCTTAGAAGCTGGCATCAAATCAGGACGGTTCTTTGC
AAATTACTTGAAAGTCAATAAACACCGACCTATGATGGAAGCGTTCATTC
AAAAAGGGGACGGCAAGATTAGTTCTTCCTCCACCAGTACAAATAATATA
TCTCAAGTCCTCATCCACGGTACTGCAGCAAGaaACCGTGCAGTAGACGG
TGATTCGGTGGTGGTGGAATTGTTACCAGAATCTCAATGGAAATCCAGAT
CTACCTCTATTCATCAGCATTCAGAATCTAATTGTAAGTGTGTTGAAAGG
Run BLAST on NCBI

transcript from alignment at sc0000374:206243..214318-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020956 ID=TCONS_00020956|Name=TCONS_00020956|organism=Clytia hemisphaerica|type=transcript|length=8076bp|location=Sequence derived from alignment at sc0000374:206243..214318- (Clytia hemisphaerica)
GACCTTGAAAACAATATTTTTTCTTTCATAACATAAAATGTCAATCATTA
TTCTGACTGAATGTGAAGAAGTAAGATATAACACAAAGAATTTTATATTA
ATTCTTCTAAGGAAAAATAAATTAATATCTTTTGACCTTGAAAACAATAT
TTTTTCTTTCATAAGATACTTTATTTTCATATTCTTCTGCTAATGGCGTA
GCCACGTATGACCAGGTCACTTTGGAGGTTAGTTCTTTGAATAGTATTTG
AGTATTATGTACATTGACATATATAAAGAATGACTCTCTCAAAAAATTAT
TTATTGATGTTGTAGCTTGGTTTATAGCATCAGATTTTTATTTGTTGATA
AGGTCTTGAAATATTATGGTAGCGAGACACCTGGTATCTTTGTGATGTCA
ATGACAGATTATATCAATGGATTTTGGCCTGATTTGAATGAAGCAAAAGA
TCTAATGGAATCACTTTCATCCATCAATGATGTTGAAGAACTAAATATCG
GTATGCCAAACTTTACTTACCTATGAGTATTGAGCTATTCTAAGAAATTG
TGAATCACCAGACAATGCCCGATTAAACTACCTCTATGGATGCTATTTTA
AATGGTCCACGGAACACCACTGATGGTATCCAGTTAAAAATGAGCGTGAC
AAAACATACCCCTACCTCTGGAATGGCCTTAATTGTCTGAATCATTGACA
TAAAAATAAACTCTCCATTGTTTACGAAACGAATAACCCTATAATAAATT
TTTTCGAAGTTCATGAAATGACTCTGTTTTTTTTCCAATGTTCAGGTGCT
TCAATCTGCAAAGAATTTCATGAATATTTTCCAAATCAAGTCTTAGAAGC
TGGCATCAAATCAGTAAGCTTCTATTATATAATAAACTTATGTCAAATTA
AGTATTGCTTCAGATCAAAACTACTTTTATTAGAAAAAAGTAAAGAGGTC
TGGCAGTTATAAACTTTTCAAATTTGGTCAAGACGTTGCCTAGTTATTAC
CTTTGTATACTTTTAATTTCGAAAGCTTAACACTAATGGGGTAGATTTAA
AAAGTCATACCTCAAAATCTTCCTAATAAGTTTAGTTTTGAGCTCAGCCT
AGACCTTGTATCAGCTAGTCTGTACAAATGTTCAAAGTCGTTTTTGAGTC
ACTCGGTACTGTCTCGAAAACTTACATTTAAACCACTTTTTTAGTAATGT
TTTTACTTCACGTTTATTCTGGGAAGGATTCTGTTCAAAAAAGAATGACA
CATTGGAAAAATGCAATTTTTGTTGATTTTGGATAATGTCGTGTAACTTC
TCAGCAAATGTTTCATGAGAGAGGGGAAAATACAGGATTGTGGATTAGGA
CTCTAGGAATTCACTGGAATTTTTTTTTATCAAAATGTGTAGTTTTGAGG
CTAATATTACCCTTTTTCTATCTTTTTTTGAAATAGCCTCAATTAAGCAC
TTATTGAATATCCACATTTTGAACTGGTTCAAAGTTGAAGATCACAGATT
GAACTTTTCTAAGATATACTTATGTGAAAGAATTTCAAGTGATAAATGTG
AGAAATTGTGGCTCAAATTCGCTGTATTGTTATTGATATTTTTTCAATAA
TTAAAAAAACAATATAGCAAATAAATACTAGTGATAGAAATAATGAATCT
GGTGTTCTTGAAAAATTAGTAAAAAATAGAACATATTTGAAGTATTTTAC
TTACTAATTTGTGAAATCATGCGGCTAATAGTCACACTTTTTTGAAAAAA
GGCCCTTCTTTTAAATGGTAGCCACACCCATTCACAAAAGAATTCCAAAG
ACCTGAATTGTTTGAGACTATAGCTTGAAGATCAAATGTTCACTTTCTGA
ATTCAAAAGTATCAACTAATAGTTGCCCTGTGATTCTACGTGGCTAAAAA
AACTTACTAAAATTTCCGGATTATTAAAAAGGCTACCCACATTTTTTCAC
GTCGTGAGTGAAAAAATAACCTTGTCTAAACTTTCGAAAATTCCATTGGC
TTTCTTTTGATACCTTGCATGCCTTTCTTTAAAATTGATATGTGATTAAT
TGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTCTGATGCTGTATCCTTAGAAAATGAAAACAAAACCAT
TCAATAAGTATCATCTCAAGCAAAAAACTTTCAAATTCCACGATTAGACT
TTTTTATTCAATACCTTTGCCTCTGGGTGCATTTTGAGTTTATTAACCAC
ATTATTTCACTTTCAAGGATCAATAGCCCACATTTTTTCACATAGTCTCA
AAATTTTATTATTCAATGTAACCTGTGCAAAATTTGGGTGACTGATCTTT
TAATTTGAAGTTGCTACACCTTTTTGAAATTAGTTGGTAGAATTAGCCAC
TCAAAAAATTAGCCACAATCTTTCACACACTTTAAAGGCTAGTTACTAGC
CACTGAAGATCACTAGAAATTTCGTTTCAAATACAAAAGAAATTTTTGTC
ATTTTAGGACGTGGGAATAAATTTTTGGACCTACCCCGGTGGGGTAGAGG
TCCTATAAATTAACCGATGTCCGTTCGTTCGTCCGTTCGTTCGTTCATCC
GTTCGCCTGTTGCCAGCTTTTCTCGGGATCGGTTCATTAGTTTTTTCAAA
TTTTTTGCACAATGATGCAAAAAATTAAAAAAAAGAAAAACTGGTTTTAG
GCATTTTCTCGAGATTTCATCATTCTGCATCATTAAATTTTTTGCTCAAA
GATGCGTATTAACAATGCCCAAAACATGGCCTAGTCCGATTTTTGAGAAA
AATTTTTTTCCGGTTGAAAATGCCAGAAATATGCCGGAAATCGCCGTTTT
TCTGGATTTTCATTTAGGCCCCCCCCCTGAGTTTAAAAAATGAGACAGCT
CCCACCCACTTTTAGGCCGATTTTAGATGTACACCCCCCCCCCAAATAAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAATATAGCTTTTCTCAATGTTAACTCATTATTTTT
TTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGACG
GAGCCTGATTTTCGAAAAACATTTTTTTTCGGCCGAAAATGCCAGAAATA
TGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGAATTTTTTTCTTATAA
TTGGTTGTTTTTTCATTCAAAAACATTATTAATAGCAATGCCCACCATCA
AGCATGTTTCAATTTTCAAAAAAATTGATTTTTGAAGCCGGAACTATGCA
AAAATCGCCGGAACAACTTATTTTCGCCGGAAAGACAGTATTTCTTGAAT
TTCTCGAGCTGTACTTAATATTTTTTTATGAAATTTTGAGCACTGATGAA
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NNNNNNNNNNNNNTGCATTTTCGCAAAACGCTATATCATCTGACTGATTG
TTTTCATTTTTCTCCTTATTGCCCTATTATCTAGCTTTCATCATCAGGTA
GGTCCATTCAGCCTGTTGCTTGTTTTAACTGTAGCCACAAAATATCACAT
TATATAGGCTTTTTAAAATCATCACTAAAAAAGTTGAATTATGTCATTCT
TTTTTGAACACGATCGAAGATAAATAATTCTCTTTTAATGTTACAGGGAC
GGTTCTTTGCAAATTACTTGAAAGTCAATAAACACCGACCTATGATGGAA
GCGTTCATTCAAAAAGGGTATGAAATATATAGTTTTGATACATACTAACG
GCATCTTTAACACTTTATGAAGCTTTTTATCATACCAACTTGTGTTTTTA
TTTAAAATATCCACAGAACCAATCAGTAGAAGAAGCAAAAAAACAATTTC
AATCTTCTTCTTAAATCAACTTAAGGAAGTGTCTAAAGTAACTTCTTCAT
AAAGTCTTCATAGTTATCATATATTATGAGAATGTTCTTTTTTATAATTA
TTTAGCAATAAAGTTTCCTCATAAAAATTTTCTCTCATTTCTAAACAGGG
ACGGCAAGATTAGTTCTTCCTCCACCAGTACAAATAATATATCTCAAGTC
CTCATCCACGGTACTGCAGCAAGGTTTGTTTTCAATACATGATGTTCACC
AGTGTAATGACTTATTTTTGCCACTCAAAGGTGTACATCCGTAAAACGTT
GATCCTTCAAACTTCTGGACTATTACCATGGCATCTCAGCGGTTTGAAAA
AGCCTGGAAACCTAGAAAAAGACCTGTTTTAAAAGGAAATCGGAATATTA
GGAAAAATCGGTGAACTTTTCTTTTAGTCTTCTTTCCAGAAGTTTTTAAG
TTAAGTTTTTTTAAAGCTTAAATCTTAATAATACTTTTTTCAAAATTTGT
CAATAATATCAACCAAAATCAGCACGTACACCAAAATTATTTTGGCAAAC
TGCTGGGAAGTTTCGAGCCATTTTGGTCCAGATATGACAACTATTTTTTT
CTTCTTAGAAACCGTGCAGTAGACGGTGATTCGGTGGTGGTGGAATTGTT
ACCAGAATCTCAATGGAAATCCAGATCTACCTCTATTCATCAGCATTCAG
AATCTAATTGTAAGTGTGTTGAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011751XLOC_011751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020956-exon-sc0000374-1575043694:214249..214318TCONS_00020956-exon-sc0000374-1575043694:214249..214318Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1575043694:213819..213966TCONS_00020956-exon-sc0000374-1575043694:213819..213966Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1575043694:213456..213523TCONS_00020956-exon-sc0000374-1575043694:213456..213523Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1575043694:207102..207172TCONS_00020956-exon-sc0000374-1575043694:207102..207172Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1575043694:206746..206820TCONS_00020956-exon-sc0000374-1575043694:206746..206820Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1575043694:206243..206360TCONS_00020956-exon-sc0000374-1575043694:206243..206360Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1510915933:214249..214318TCONS_00020956-exon-sc0000374-1510915933:214249..214318Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1510915933:213819..213966TCONS_00020956-exon-sc0000374-1510915933:213819..213966Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1510915933:213456..213523TCONS_00020956-exon-sc0000374-1510915933:213456..213523Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1510915933:207102..207172TCONS_00020956-exon-sc0000374-1510915933:207102..207172Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1510915933:206746..206820TCONS_00020956-exon-sc0000374-1510915933:206746..206820Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1510915933:206243..206360TCONS_00020956-exon-sc0000374-1510915933:206243..206360Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1491911889:214249..214318TCONS_00020956-exon-sc0000374-1491911889:214249..214318Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1491911889:213819..213966TCONS_00020956-exon-sc0000374-1491911889:213819..213966Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1491911889:213456..213523TCONS_00020956-exon-sc0000374-1491911889:213456..213523Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1491911889:207102..207172TCONS_00020956-exon-sc0000374-1491911889:207102..207172Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1491911889:206746..206820TCONS_00020956-exon-sc0000374-1491911889:206746..206820Clytia hemisphaericaexon
TCONS_00020956-exon-sc0000374-1491911889:206243..206360TCONS_00020956-exon-sc0000374-1491911889:206243..206360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:206243..214318 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.972813	0	0	0	0	0.107374	0	0	0	0	0	0	0	0	2.2761	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00020956 vs. Swiss-Prot (Human)
Match: DI3L1 (DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.011e-37
Identity = 73/167 (43.71%), Postives = 109/167 (65.27%), Query Frame = 2 
Query:   35 KMSIIILTECEEVLKYYGSETPGIFVMSMTDYINGFWPDLNEAKDLMESLSSINDVEELNIGASICKEFHEYFPNQVLEAGIKSGRFFANYLKVNKHRPMMEAFIQKGDGKXXXXXXXXXXXXQVLIHGTAARNRAVDGDSVVVELLPESQWKSRSTSIHQHSESNC 535
            +M I+++TE EE ++ YGSET G+FV++  +Y++ FWPDL  A +L +S+       E     S  KE+ E+ P +VLEAGIKSGR+    L VNKHR  +EAF++        SS  ++ +S +LIHG  ARNR++ GD VVVELLP+++WK R+ ++    E++C
Sbjct:  157 RMPIVMVTEDEEAIQQYGSETEGVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGA----SSKDSDLVSDILIHGMKARNRSIHGDVVVVELLPKNEWKGRTVAL---CENDC 316
The following BLAST results are available for this feature:
BLAST of TCONS_00020956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DI3L16.011e-3743.71DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L P... [more]
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