TCONS_00020932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020932
Unique NameTCONS_00020932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020932 ID=TCONS_00020932|Name=TCONS_00020932|organism=Clytia hemisphaerica|type=transcript|length=2030bp
TTAGAAAATAAAACGCAATTCAAAGTTGGATAAAAAATGGAACCAAAAAT
TATGAGCAACATCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCG
ATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCG
AAACCAAAACCGATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCC
ATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGA
AACCAAGGATTGAtaatatcgggaaatcgggaaatggAGGGATCAGAGTG
AGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGA
GATGATTGTCACCAAAAATGGAAGACGAATGTTTCCAGTACTAAAAACAT
CCATTCAAGGATTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTT
GTTCCTGTAGATGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCG
TGGTGGAAAACCGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGG
ACTCACCTAACTTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCG
AAAGTAAAACTTACcaataaagaaaataacaataatcaAGTGGTGATGCT
GAATTCACTGCACAAATACGAACCACGTATGCATGTTTTAAAGGTGGGTA
GCAAAGAATCAGAAAGAACGGTTTCCACTCACTCATTTGAAGAAACAGTT
TTTATCGCTGTCACTGCTTACCAAAATGAAGAGATCACATCACTAAAGAT
CAAATACAATCCATTCGCAAAAGCTTTCTTAGACGCCAAAGAACGTTCAG
AGCAACAAATCGCAACCCACCCAAGACGTTTTGAATTTCCTTGCATACCG
CCACCAACGGTCGGGGGTCCAGGAGCCCCATGTAGATGCAGCTTAGATGG
ATACCCTTTCCATCGGCACCATCCTTCGTCCCCGCCAGAGTATCCCAGGT
CCTTTAGTTATCCTTACGCAACAATTTATGAACATGATGGCAAGCAACCA
AGGGCGGTTCATTATGGAACGAGACTACACCCATATTCTCCACCCTCGAG
tgtttATCCATTTATGACGCCATCTCCGCCCCCTCAACTCCCGCCACAGT
GTCATCCTCCAATCAAACCGACCTTCTTTGCAGAAGATTTTCAAAGAACA
CGGCATTCCTCTTCATCCTCAACAAATCACCGGTCATGCTCAATACCGGG
CTGCTCGTGTAACGGAGCCAACCGATATCCTTCTATATCTGTTCCTTATC
CGCATTATAAAAGACCATACGATACGGAATCACTTCATTTAAAATCACCG
GTACAACCGAATGATACAAGACAGCGTAGATATAGTACTACACCAGATAT
TGAGAACATTGAACAATCTTCAAGAGAAAATTCAAGGGGAAGCTCACCAA
GTATCTCCCCGACACTTAAACGATCTAGAAATGATTCTTAACCCTATTTA
TACTTAGGTTTTAGGGGTGGCTCAAAACTACGGGGGCTGTTCCTGTActa
ccccttaacttttgatctagtcggtctttttcgatgaaatttggtacaca
agatttttttgatgacgtcactcaaaGTGAGGAAAAACctaaatttcctt
tgttcttataaaagctattgtattctaacaaaggctttagaaaaagttTC
TCTGAATCTAGACAGCTTGTTTTATCctcaatattcaataaattacggtt
taaatgatatatttgacataaaaaataaatttgtatcgGAAATgcgtcaa
tttttgtgacatcTTACTGACAGAAATGCCATCATGGTCAAGGTGGTAAA
TGGgtaaattttcagttatcaatttttttttcatttcgaaGCTAAATAAA
AGCAAGGAATTTACCAAAAGCTCTATTGTTTTAGGAGCTATTACCattag
tacgaatagggttaagtgcCAAATTTATATTACTGATGCCTCATATCCGT
CAATTTAATTGAAATTCGATAATCTTAGCG
Run BLAST on NCBI

transcript from alignment at sc0000374:62777..75595+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020932 ID=TCONS_00020932|Name=TCONS_00020932|organism=Clytia hemisphaerica|type=transcript|length=12819bp|location=Sequence derived from alignment at sc0000374:62777..75595+ (Clytia hemisphaerica)
TTAGAAAATAAAACGCAATTCAAAGTTGGATAAAAAATGGAACCAAAAAT
TATGAGCAACATCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCG
ATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCG
AAACCAAAACCGATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCC
ATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGA
AACCAAGGATTGAtaatatcgggaaatcgggaaatggAGGGATCAGAGTG
AGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGA
GATGATTGTCACCAAAAATGGAAGGTAAAAGAATTAGAATTATTTGAAGC
CACATTTATCATATTCCTTTACACAGTTGAATTTTTTcatgttcttttca
aatttcacggAAAAAACTAACAGTAAATTAATAAGCTCATTCTTACCTTC
ccaacgataccaaactttgaagattgaaaatttagtgcacacttatcgtg
aatagaatTTAGATAAGGTAACTGCTCACAGATTTCTCGtggaagtgtgt
ccagttttgaagtacagttgacgctcttcaATTTGAcgttcgatacgctc
cattattcgataatattgaaagtcactgtcaaAAAGCAACTCTCTTAAAC
Gacactctactattcgatacgctccctcttgatgaaaatcctttgatcct
tgaaaatcgaattagaggaCGCCAACAGTCCGCCGTGTTGTTTACTAATT
TACTTTAGTTTACCGAacgttcaaatttcaaaacatctgATTTGAAAACA
AGAGAACTGGCTAGTTAGCTTAATTTTGGACACGCTTCCTTTTATATGAG
AAGCCCGATCCTGTCAAATTGTTAAGAGATCAGTGATCCAGTCAAATTAT
TAAGAGATCAGTGTTTGAGGCTCATCTTTATGCCTGGATTCAATTGCCAt
ctatattttatctttttaccAATCAACTTCTTCGATCTcattttgaataa
caaactaaacctcttaaaaaaattcagtggatTTCTGAGTTTAGAGAAGA
AATACTTTAGAATAATCTTCAAACATTTCAAACAGTCGATTTTCAATTCC
CCTTTGCATTTAGCTCCTTCGTTTTGGTAAGAATCTCAACGGTTgactga
gacagggatgtgctATTACTCGCGAGCATTCGAGTCATAAAACGGATTGc
aacttcaaaattttcaatttctaatttctgAGTTAAAATCTTCTGTTCTT
TTAATCATATTTAGACGAATGTTTCCAGTACTAAAAACATCCATTCAAGG
ATTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTTGTTCCTGTAG
ATGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAA
CCGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGGACTCACCTAA
CTTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCGAAAGTAAAAC
TTACcaataaagaaaataacaataatcaAGTGGTAAGACTTACACTAAAA
ATCCAtatcctttttgaaaaaaccttCAATTCCTAAATTTCTGCCTGTAA
ACCAGGCCAATACACTGGCGGaattaagacaatagagcaagtacgtcgga
aaaatgctaaggagtgcaacgctcgttaaaaacTGAAATTACAGTTACAa
atctgataagttcgacagggTCTAAAGTCACTTTGTCACCCAGGGAAATT
CAGTTATTGTCTATTATTTGTTGGTTAGTTAACCATGTAACCCATAttat
ataaagaaaaaagtagTATTCGATATTCTCATGCTTTAAAACACCAGGGT
TtggtgaagctatgaatgccatcctcagaagcttaCAGTTACAaatctga
taagttcgacagggTCTAAAGTCACTTTGTAACCCAGGGAAATTCAGTTA
GTACCAAATACTCATGGCACTAAATTGTTTGCGTCGTTCACTCTTCAATT
TAACAAATCAACCTACTCGAAtgaatttcagccaaatcgaatgGGCTAAT
CTCTATATTTGTCTGCAAATCATGTTTATAATTATCCAAACCTACAACtg
attaaaaataccaaatcCTTCCCAGCCCCAGTGCTCGATATTGATTTCAT
GCGATTTCAAAAAGTAATGGATgctaaaaaaaaagtgaaatcaaTGTCTA
ATTTTCAGGTGATGCTGAATTCACTGCACAAATACGAACCACGTATGCAT
GTTTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGGTTTCCACTCACTC
ATTTGAAGAAACAGTTTTTATCGCTGTCACTGCTTACCAAAATGAAGAGG
TGAGTTTGGTATCCTGCAAACTGACCCTGTAAATGCAGGTCAATCACTAT
TTTCACACTTCATGTTGACACTTCATTCTAAATTTCATTTCTCcgtattt
tcaaaacatttttttttttattctgccTTCTTATAGAAGCAACTTATATC
CCATCGATCATAAACTACCTATATGGGTTAGCCACACTTTCTAATACGAG
CTTAGAAATAGAATCTACCGTCAGATAAAAAATATGTTCCACTGCAAAAG
ATTCAATGGTGTATGAATATTACAGTGTACAGTTtcgctttttggaccta
ccgggaggtcctttaatttgaccgttgtctgttcgtctgttacaagcttt
tctcgggattggctcattagttttttttaattttttgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattttggggggcaaattt
gggccaaaaactacctaaaaataaggttttttggactttgtgcaaaattg
cttcattagtttttcctgatttttggcagaaggatagagtgcaaggtacc
ctaaaatgtggctgaagtaatttttctcagaaaattttttttcgtcataa
aattttcaaaaaaagacgaccaagttacacaatgataaaagaaaataaat
cagacgtttttgcattgttctaaaacttattgtgtttgctcaataccaat
agtaaaatATAGAACACCTACTTTTTgatcaacaggtaggtccattcagc
atgttgcttgttcttCAGGGGTTTGAGTATACCGCATTTGTGTCCCCTGT
ATCTctttgtgtcacagacccactgggaccccagccccactggaagattt
agcaaaaatttcgtccccggtggaaaaatatcaaaatatcacAATCATCC
CTACTGGGTTGTTTAACCTTAAAACATAGAATTTCTAACCCcctgaggaa
aaagttccacaggggttgtgagacaggggtgtcactTGGTATCAAGGGGA
GATCTGTCATTAATTATCACATTTAAAATTGTtaacataaaatcaaaaaa
aaaactattaagTAGAAAATCTATCCAAAATCTAAAAAACTCTACCTGCA
GGGTTTTACGATTACACAAGATTGAATGCATGGTTTGggaaagaaaggag
aaaaataaacacttacagtatatggccccaaaacggagacggcccccaaa
acggaggttttcattaaaatgaagattctgacttgtagatttatcagaat
taaacaatttttgtttattttgaaagaatgatggttatacttaaaaatga
gcctgtttttgctggtttgggacagattcaaaataacatatttgcgtcca
aaggaaatattttaacaccaaaattagataaaaattgcatatagctcact
ctagctccttggatattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgttaaaggtttt
catgcagcaaaaatttttgtaaaatctcttttcctctagatttgagagaa
atttcaaatttgatcgccgttttgggggccacatactgtacggAAGACCC
TTGTCATCAAAAAGCTTCCCATataattttagtgtttttgaaaaacattc
ctATGCCAATAGGATTATCTTTCTATGTCATCAAGGTGATAAAAACACGC
AGGCATGTTAAGTAGTCTAGCAGATATGCTGAATTGAAGTTTGCAACATT
CGTAGAGAATGAGACTTATCCTTCAGTGAAGTTTTCCCAGggcctttttt
caaatattgtatTTCCGCCCTAACTAACCCTGTGGCGAAGCTGGTAATTT
CGAcgctgaaaaaaatgaaatccttcaattttttttgttgaaaaacaaTA
AACGTGGAATGAGTAGGCGTGGCTTCTGAGGGTAGCAGAGTCAGACATTT
ATGACAGGTCTCAGAATTGAGCTTATTTTGACGTGCAAAATTCTCTCATT
AATCTGAAGTTTAttaaattagtaaatttgatcTCACGATATTAAGTCAC
TTGTATGATTTAGAGAAATTCTTAAGTGCCTTCTCGTAGGGAGTTTTCAC
TGTGTCTGCTAGATTTGGTATTTTCATGTCACTAATCTGAATTTAAAATC
AGCCGTGtcagatttttattacaaaaatggattttatttttctttaaccc
gACGATATCATTTTAATCTCTGGGGACTCAACGAAAGGAGCTTAAAGGAG
ATTGAAGTCTtgtgtttaaaaattttaggaTATTCTTATCACAGGGGCGT
AAATTTAGGTCAACTTTGCTAGTTGGTAGAGTCCAACCTTCTGTGACACA
GGGTGTATCATGTATTATGTACAAGACGTCCACGAATTTTAGACAAATTG
GCAAAGCAATTATTATTTTCCTGGTGTGAATACAAAAAATTCTAGACAAG
GCATCGACAGTTGTGAAGCAAAGataaattaaaatcaataaatctCTCCT
ATCTTCCTAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAAG
CTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAATCCACCCA
AGACGTTTTGAATTTCCTTGCATACCACCACCAACGGTCGGGGGTCCAGG
AGCCCTATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCATC
ANagacaatagagcaagtacgtcggaaaaatgctaaggagtgcaacgctc
gttaaaaacTGAAATTACAGTTACAaatctgataagttcgacagggTCTA
AAGTCACTTTGTCACCCAGGGAAATTCAGTTATTGTCTATTATTTGTTGG
TTAGTTAACCATGTAACCCATAttatataaagaaaaaagtagTATTCGAT
ATTCTCATGCTTTAAAACACCAGGGTTtggtgaagctatgaatgccatcc
tcagaagcttaCAGTTACAaatctgataagttcgacagggTCTAAAGTCA
CTTTGTAACCCAGGGAAATTCAGTTAGTACCAAATACTCATGGCACTAAA
TTGTTTGCGTCGTTCACTCTTCAATTTAACAAATCAACCTACTCGAAtga
atttcagccaaatcgaatgGGCTAATCTCTATATTTGTCTGCAAATCATG
TTTATAATTATCCAAACCTACAACtgattaaaaataccaaatcCTTCCCA
GCCCCAGTGCTCGATATTGATTTCATGCGATTTCAAAAAGTAATGGATgc
taaaaaaaaagtgaaatcaaTGTCTAATTTTCAGGTGATGCTGAATTCAC
TGCACAAATACGAACCACGTATGCATGTTTTAAAGGTGGGTAGCAAAGAA
TCAGAAAGAACGGTTTCCACTCACTCATTTGAAGAAACAGTTTTTATCGC
TGTCACTGCTTACCAAAATGAAGAGGTGAGTTTGGTATCCTGCAAACTGA
CCCTGTAAATGCAGGTCAATCACTATTTTCACACTGATTGCCTTCATGTT
GACACAGCAttctaaatttcatttttccgtgttttcaaaacatttttttt
ttaattctgccTTCTTATAGAAGTAACTTATATCCCATCGATCATAAACT
ACCTATGTGGGTTAGCCACACTTTCTAATACGAGCTTAGAAATAGAATCT
ACCGGCAGATAAAAAATATGTTCCACTACAAAAGATTCAATGgtgtccca
gctggcacataacgttgcttcgacgttcatctaacgttatatggacgttg
tgaacgttagatgaacgttgcaacaacgttgtgtgccagttggtGTAAGA
ATATTACAGTGTACAGTTTCGCTTTTTCTTTTCTGGACTCTCGAAAGACT
CTTAAGAACCTTTGAACTGAATGACCGAAATATTCTCTAAGTGAAGGGTA
CGTTgggatttcaaaagttttatgccttcttatttttgccattaTTTGGT
ACACTCGAAGCCAGCATTCTTCAGGGGTTTGAGTATACCACTTGACCCCT
GTATCTctttgtgtcacagacccactaggaccccagccccactaggaccc
cagccccactggaagatttagcaaaaatttcgtccccggtgggaaaatat
caaaatatcacAATCATCCCTACTGGGTTGTTTAACCCTTAAacatagaa
tttctatccccctgaggaaaaagttccaccggggctgtgagacaggggtg
tcactTGGTATCAAGGGGGGAGGGTCTGTCATTAATTATCACAtttaaaa
ttgtcaaaataaaatcaaaaagaaactaTTAAGTAGAAAATCtaactaaa
atctaaaaaactcTACCTGCAGGGTTTTACGATTACACAAGATTGAAAGG
TTTGTGAAAGAGAGGAGGAAAAAAAACACTTACGAAAGACCCTGACGTGt
cgtcatcaaaaaacttttcccatataattttagtgtttttgaaaaacatt
cctATGCCAATAGGATTAGCTTTCTATGTCATCAAGGTGATAAAAACACG
CAGGCATGTTAAGTAGTCTAGCAGATATGCTGAATTGAAGTTTGCAACAT
TCGTAGAGAATGAGACTTATCCTTCAGTGAAGTTTTCCCAGggccttttt
tcaaatattgtatTTCCGCCCTAACTAACCCTGTGGCGAAGCTGGTAATT
TCGAcgctgaaaaaaatgaaatccttcaattttttttgttgaaaaacaaT
AAACGTGGAATGAGTAGGCGTGGCTTCTGAGGGTAGCAGAGTCAGACATT
TATGACAGGTCTCAGAATTGAGCTTATTTTGACGTGCAAAATTCTCTCAT
TAATCTGAAGTTTATTAAATTAgtaaatttaatctcgcgataTTAAGTCA
CTTGTATGATTTAGAGAAATTCTTAAGTGCCTTTTCGTAGGGAGTTTTCA
CTGCGTCTGCTAGATTTGGTATTTTCATGTCAATAATCTGAATTTAAAAT
CAGTCGTGtcagatttttattacaaaaatggATTTTATTTGTCTTTAACC
CGACGATATCATTTTAATCTCTGGGGACTCAACGAAAGGAGCTTAAAGGA
GATTGAAGTCTtgtgtttaaaaattttaggaTATTCTTATCACAGGGGCG
TAAATTTAGGTCAACTTTGCTAGTTGGTAGAGTCCAACCTTCTGTGACAC
AGGGTGTATCATGTATTATGTACAAGACGTCCACGAATTTTAGACAAATT
GGCAAAGCAATTATTATTTTCCTGGTGTGAATACAAAAAATTCTAGACAA
GGCATCGACAGTTGTGAAGCAAAGataaattaaaatcaataaatctCTCC
TATCTTTCCAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAA
GCTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAACCCACCC
AAGACGTTTTGAATTTCCTTGCATACCGCCACCAACGGTCGGGGGTCCAG
GAGCCCCATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCAT
CCTTCGTCCCCGCCAGAGTATCCCAGGTCCTTTAGTTATCCTTACGCAAC
AATTTATGAACATGATGGCAAGCAACCAAGGGCGGTTCATTATGGAACGA
GACTACACCCATATTCTCCACCCTCGAGtgtttgtaagtatttttgcaAC
TctctttttctcaattttttataGTAATTTTGTAACCTCATTCTCCCCCT
CCATCTTCAGTCAATAATTTTGCACTCTTCATTTCGAACTTTGTTGTTTG
TTATAGTACTTCAGGACACCCTTGTCTCATCTTTGATTCTAAATCGAGAT
TTGCAagcaaatgtttcatttcaacTTTCTGCATTCTGGTACTAGTGAGT
tccttttgacattttttaaccTACATTAACTATAACCAACTGTGTTATTT
CTTCTTCTATTTAAGATCCATTTATGACGCCATCTCCGCCCCCTCAACTC
CCGCCACAGTGTCATCCTCCAATCAAACCGACCTTCTTTGCAGAAGATTT
TCAAAGAACACGGCATTCCTCTTCATCCTCAACAAATCACCGGTCATGCT
CAATACCGGGCTGCTCGTGTAACGGAGCCAACCGATATCCTTCTATATCT
GTTCCTTATCCGCATTATAAAAGACCATACGATACGGAATCACTTCATTT
AAAATCACCGGTACAACCGAATGATACAAGACAGCGTAGATATAGTACTA
CACCAGATATTGAGAACATTGAACAATCTTCAAGAGAAAATTCAAGGGGA
AGCTCACCAAGTATCTCCCCGACACTTAAACGATCTAGAAATGATTCTTA
ACCCTATTTATACTTAGGTTTTAGGGGTGGCTCAAAACTACGGGGGCTGT
TCCTGTActaccccttaacttttgatctagtcggtctttttcgatgaaat
ttggtacacaagatttttttgatgacgtcactcaaaGTGAGGAAAAACct
aaatttcctttgttcttataaaagctattgtattctaacaaaggctttag
aaaaagttTCTCTGAATCTAGACAGCTTGTTTTATCctcaatattcaata
aattacggtttaaacgatatatttgacataaaaaataaatttgtatcgGA
AATGCNaccggggctgtgagacaggggtgtcactTGGTATCAAGGGGGGA
GGGTCTGTCATTAATTATCACAtttaaaattgtcaaaataaaatcaaaaa
gaaactaTTAAGTAGAAAATCtaactaaaatctaaaaaactcTACCTGCA
GGGTTTTACGATTACACAAGATTGAAAGGTTTGTGAAAGAGAGGAGGAAA
AAAAACACTTACGAAAGACCCTGACGTGtcgtcatcaaaaaacttttccc
atataattttagtgtttttgaaaaacattcctATGCCAATAGGATTAGCT
TTCTATGTCATCAAGGTGATAAAAACACGCAGGCATGTTAAGTAGTCTAG
CAGATATGCTGAATTGAAGTTTGCAACATTCGTAGAGAATGAGACTTATC
CTTCAGTGAAGTTTTCCCAGggccttttttcaaatattgtatTTCCGCCC
TAACTAACCCTGTGGCGAAGCTGGTAATTTCGAcgctgaaaaaaatgaaa
tccttcaattttttttgttgaaaaacaaTAAACGTGGAATGAGTAGGCGT
GGCTTCTGAGGGTAGCAGAGTCAGACATTTATGACAGGTCTCAGAATTGA
GCTTATTTTGACGTGCAAAATTCTCTCATTAATCTGAAGTTTATTAAATT
AgtaaatttaatctcgcgataTTAAGTCACTTGTATGATTTAGAGAAATT
CTTAAGTGCCTTTTCGTAGGGAGTTTTCACTGCGTCTGCTAGATTTGGTA
TTTTCATGTCAATAATCTGAATTTAAAATCAGTCGTGtcagatttttatt
acaaaaatggATTTTATTTGTCTTTAACCCGACGATATCATTTTAATCTC
TGGGGACTCAACGAAAGGAGCTTAAAGGAGATTGAAGTCTtgtgtttaaa
aattttaggaTATTCTTATCACAGGGGCGTAAATTTAGGTCAACTTTGCT
AGTTGGTAGAGTCCAACCTTCTGTGACACAGGGTGTATCATGTATTATGT
ACAAGACGTCCACGAATTTTAGACAAATTGGCAAAGCAATTATTATTTTC
CTGGTGTGAATACAAAAAATTCTAGACAAGGCATCGACAGTTGTGAAGCA
AAGataaattaaaatcaataaatctCTCCTATCTTTCCAGATCACATCAC
TAAAGATCAAATACAATCCATTCGCAAAAGCTTTCTTAGACGCCAAAGAA
CGTTCAGAGCAACAAATCGCAACCCACCCAAGACGTTTTGAATTTCCTTG
CATACCGCCACCAACGGTCGGGGGTCCAGGAGCCCCATGTAGATGCAGCT
TAGATGGATACCCTTTCCATCGGCACCATCCTTCGTCCCCGCCAGAGTAT
CCCAGGTCCTTTAGTTATCCTTACGCAACAATTTATGAACATGATGGCAA
GCAACCAAGGGCGGTTCATTATGGAACGAGACTACACCCATATTCTCCAC
CCTCGAGtgtttgtaagtatttttgcaACTctctttttctcaatttttta
taGTAATTTTGTAACCTCATTCTCCCCCTCCATCTTCAGTCAATAATTTT
GCACTCTTCATTTCGAACTTTGTTGTTTGTTATAGTACTTCAGGACACCC
TTGTCTCATCTTTGATTCTAAATCGAGATTTGCAagcaaatgtttcattt
caacTTTCTGCATTCTGGTACTAGTGAGTtccttttgacattttttaacc
TACATTAACTATAACCAACTGTGTTATTTCTTCTTCTATTTAAGATCCAT
TTATGACGCCATCTCCGCCCCCTCAACTCCCGCCACAGTGTCATCCTCCA
ATCAAACCGACCTTCTTTGCAGAAGATTTTCAAAGAACACGGCATTCCTC
TTCATCCTCAACAAATCACCGGTCATGCTCAATACCGGGCTGCTCGTGTA
ACGGAGCCAACCGATATCCTTCTATATCTGTTCCTTATCCGCATTATAAA
AGACCATACGATACGGAATCACTTCATTTAAAATCACCGGTACAACCGAA
TGATACAAGACAGCGTAGATATAGTACTACACCAGATATTGAGAACATTG
AACAATCTTCAAGAGAAAATTCAAGGGGAAGCTCACCAAGTATCTCCCCG
ACACTTAAACGATCTAGAAATGATTCTTAACCCTATTTATACTTAGGTTT
TAGGGGTGGCTCAAAACTACGGGGGCTGTTCCTGTActaccccttaactt
ttgatctagtcggtctttttcgatgaaatttggtacacaagatttttttg
atgacgtcactcaaaGTGAGGAAAAACctaaatttcctttgttcttataa
aagctattgtattctaacaaaggctttagaaaaagttTCTCTGAATCTAG
ACAGCTTGTTTTATCctcaatattcaataaattacggtttaaatgatata
tttgacataaaaaataaatttgtatcgGAAATgcgtcaatttttgtgaca
tcTTACTGACAGAAATGCCATCATGGTCAAGGTGGTAAATGGgtaaattt
tcagttatcaatttttttttcatttcgaaGCTAAATAAAAGCAAGGAATT
TACCAAAAGCTCTATTGTTTTAGGAGCTATTACCattagtacgaataggg
ttaagtgcCAAATTTATATTACTGATGCCTCATATCCGTCAATTTAATTG
AAATTCGATAATCTTAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011741XLOC_011741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020932-exon-sc0000374-1491911889:62777..63150TCONS_00020932-exon-sc0000374-1491911889:62777..63150Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1510915933:62777..63150TCONS_00020932-exon-sc0000374-1510915933:62777..63150Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1575043694:62777..63150TCONS_00020932-exon-sc0000374-1575043694:62777..63150Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1491911889:64091..64358TCONS_00020932-exon-sc0000374-1491911889:64091..64358Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1510915933:64091..64358TCONS_00020932-exon-sc0000374-1510915933:64091..64358Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1575043694:64091..64358TCONS_00020932-exon-sc0000374-1575043694:64091..64358Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1491911889:69611..69751TCONS_00020932-exon-sc0000374-1491911889:69611..69751Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1510915933:69611..69751TCONS_00020932-exon-sc0000374-1510915933:69611..69751Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1575043694:69611..69751TCONS_00020932-exon-sc0000374-1575043694:69611..69751Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1491911889:71638..71959TCONS_00020932-exon-sc0000374-1491911889:71638..71959Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1510915933:71638..71959TCONS_00020932-exon-sc0000374-1510915933:71638..71959Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1575043694:71638..71959TCONS_00020932-exon-sc0000374-1575043694:71638..71959Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1491911889:74671..75595TCONS_00020932-exon-sc0000374-1491911889:74671..75595Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1510915933:74671..75595TCONS_00020932-exon-sc0000374-1510915933:74671..75595Clytia hemisphaericaexon
TCONS_00020932-exon-sc0000374-1575043694:74671..75595TCONS_00020932-exon-sc0000374-1575043694:74671..75595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:62777..75595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0329908	0.0131367	0.0103808	0.0187859	0.0175872	0.00410439	0.00508396	0	0.0444261	0.0909881	0.0171245	0.0149245	0.020905	0.274628	0.138131	0.0248983	0.0119274	0.157554	0.143536	0.125831	0.0710509	0.541046	0.380909	0.0316471	0.0535379	0.014633	0.0440631
Blast
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BLAST of TCONS_00020932 vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 2.559e-88
Identity = 152/260 (58.46%), Postives = 180/260 (69.23%), Query Frame = 1 
Query:  292 IRVRLDEMGLWKSFHQLTNEMIVTKNGRRMFPVLKTSIQGLDPNAMYSIMLDFVPVDEHRWKFVNGEWSRGGKPEPTSSSRVYVHPDSPNFGAHWMKNSIVFSKVKLTNKENNNNQVVMLNSLHKYEPRMHVLKVGSKESERTVSTHSFEETVFIAVTAYQNEEITSLKIKYNPFAKAFLDAKERSE-QQIATHPRRFEFP--------------CIPP----PTVGGP-GAPCRCSLDGYPFHRHHPSSPPEYPRSFSY 1011
            +RV L+E  LW  F +LTNEMIVTKNGRRMFPVLK ++ GLDPNAMYS +LDFV  D HRWK+VNGEW  GGKPEP + S VY+HPDSPNFGAHWMK  + FSKVKLTNK N   Q +MLNSLHKYEPR+H+++VG    +R +++H F ET FIAVTAYQNEEIT+LKIKYNPFAKAFLDAKERS+ +++   P   + P                PP    P  GG    P   S D YP  R H SSP  YP  +++
Sbjct:   42 LRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQ-IMLNSLHKYEPRIHIVRVGGP--QRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHKEMMEEPGDSQQPGYSQWGWLLPGTSTLCPPANPHPQFGGALSLPSTHSCDRYPTLRSHRSSP--YPSPYAH 296
The following BLAST results are available for this feature:
BLAST of TCONS_00020932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAC2.559e-8858.46Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1[more]
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