|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020892 ID=TCONS_00020892|Name=TCONS_00020892|organism=Clytia hemisphaerica|type=transcript|length=1833bp
aagaatgttaaCTGTGCCTATTTGAAGAAAACTCATTTATAGGGATGGCC
CCCAAGCCAGCTTATCAAAAGCTCAACAGTGAAGATGTGGATGATGATAT
CGTAGTAACCACATCAACTCCAACTACATCAACAGCAACTGCTTCTCTAT
CTACAACACAGTCAATAACAGAAACTACTGCTTCAACACCTACACCCACA
CAAGCACTTGATGACGCCCCACCACCCTACGAACCAAGCACAGATAACAA
TGAATCAGAAACAGTACAACCGGCACAAACAGATGACCTTTTAAATCAAT
CACCACCACTTTACACTGATATCGTCAAACTACCAACCTATAATGAATCA
CAAAATATTGATGATAGCGAGCCTGAAGATCACCAAGGCTTCAATAGNAA
TCACCACCACTTTACACTGATATCGTCAAATTACCTACCTATAATGAATC
ACAAAATATTGATGATAGCGAGCCTGAAGATCACCAAGGCTTCAATAGGA
TTCGTTTCTTCTTTGTGACTGGAGATAACCAAGaaGTTACAGAAGAGAAT
GTTGGGACAGATATTGGTTTCATATTGTGCTTCCTTATGTCTTTCATCTT
TAACGGATTGGGATTCATTGTTGCATATTGTAGTACTAGCACGCTTTCCT
CACATTATGGTGCTTTTTCTGGCTTTGGATTATCTCTTGTCAAATGGGCT
TTCATTGTAAAGCACAAGGAAATGCTAAAGGAATATTTCGATGGAAACGA
TTGGCTACTATATTGTGTAATTCTATTAGgttggATGATTTTCTTACGGG
GTATGTTTGCGTACGCGCAGCTCAAACGGTCCATCTTTTCGTCAAGAGCT
CGTTTGAATCCACGACACAACGAAGAGAGTATCGAATAACTTATTCAatg
gattttattttgaagacatTCATTTGAGTTATTTTAAACTTTGTTATACT
TTGGAGCTATAACCTGAGAAAGGGTGAAGTGAAGCGAAATAAGTGATTTA
TTTTTCTAGAAAATGGAATATGATAGAAACACCTTTTTCCCGCCCCTTAC
TACACCCTATTGGTTACAGGTCAATTAAATACAAAAACACAAGGAGCACA
GacataaaactgatttttcagTCCCTTCAACTTTTTCTTTCAGACCTTTT
ATTGCTGCTACtgcaataaaaagttttatgtCACTTAAAATCTATCAAGA
TATCACAACTCCTAGGCTGCCAACTTTCGGTTTGTGCAGCGAAAAAACTG
GCTTTTAGAATTGCAACCTTGCAGCGCAGAAAAACTTGGTGAAATTCAtg
cccttagagtgcattttctcaaattttcaaatcttttaaaGCAAGAGATG
GGTACCAGTCGGTCGATTTGTTCTCCTTGTGAAATGNCTCTTTTAAAGCA
AGAGATGGGTGCCAGTCGGTCGGTTTGTGCTCCTTGTGAAATGTatgtaa
atagaaaaaaatggtTTTAAGTATTATTTTTCTAACACTCGTCAACAagc
attattttgatttttgtcatttggtatattttaaagctttttgttTGATc
caaaatgattaaaatgaattatgaaaaaatttcgcggagctaataaaatg
aataattaTCCAAGTAAATTTCAGAGCCCCGAAAGGGTGAATTTATACCT
TTTGATTCCACCTTGGGAACTAGAACCGTTTTAATCAATTTCATCAGTAA
TATTTGCTTCAAACGATTTTTTATGTGTGTGTAATCTTTGTAAATCtctt
ttagttttgatttttttttcgcaaaACAAAATGTTGATTTTGGAAAATCC
CACTTGAAGTCCAATTCTTtcattttggcaaaa Run BLAST on NCBI protein sequence of TCONS_00020892-protein >TCONS_00020892-protein ID=TCONS_00020892-protein|Name=TCONS_00020892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MAPKPAYQKLNSEDVDDDIVVTTSTPTTSTATASLSTTQSITETTASTPT
PTQALDDAPPPYEPSTDNNESETVQPAQTDDLLNQSPPLYTDIVKLPTYN
ESQNIDDSEPEDHQGFNXNHHHFTLISSNYLPIMNHKILMIASLKITKAS
IGFVSSL Run BLAST on NCBI transcript from alignment at sc0000373:166073..181835+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020892 ID=TCONS_00020892|Name=TCONS_00020892|organism=Clytia hemisphaerica|type=transcript|length=15763bp|location=Sequence derived from alignment at sc0000373:166073..181835+ (Clytia hemisphaerica)
aagaatgttaaCTGTGCCTATTTGAAGAAAACTCATTTATAGGTAGTACc
ctgagattgggtaacttgcatcagtggaggctaacatgcatagccctcaa
ataaaagacttggctggtcattaaagtacaactacgcagctccgctcgca
gctttactttatcatttttgttttgatttaattttgtattttaatgacca
gccaggtctttcatttaagggctatgcatgttgcctccactgatgcaagt
tacccaatctcacggtaagcTTTACTTGCATCCACTGCAGTGTGGAGTAA
TTATTAGTTTGCCTAAAGGAGTATATACCTTTTCGTTTTGCTTTAtccca
gacgtaattaatcgaaccaatcgaacggtatttttaatcgaactttgtcg
aacttaatcatACTTTGTTGGGCAattaatgttcgactaagtttggttgt
cgaactttaatcgaatactcacaaatttctcaaaatacaaagttcgatta
agtttgattactgaaatcgaacttaaacgaactttttttaaagagacctc
gacagttcgattagttcgattacatTGTCAAGtttaatcgaacaaaaatt
tgagaGAACCCGAGCAACTGAAGGCCGCTCCACTTGCGCTTaattcgatc
gcactttttgccggcctttgacgacactttgaggaactttgaagcacccc
agcTGGtacaggcgtgtaccctcacatcccctcTCACCAGTGGGCACGGA
TCAAACTCCCCTGAACCCCGGCTGGGACCCCCAGGTACCGTCCACGgtag
tacccaaaggaggtcattttttgttgTCGAACTTTTTCGAGCGgagtttt
ttgtcaaatttgtcgaaCTTTTTCGAACGGAGTTTTTTGTCGGTTGGTTA
Gaaacgcaggagacaggacccaggaggcaggacacaggacgcaggtcagt
gctgacaggtcagctttaattgctgtaaaagacaaagaaaatgtttgaaa
aacacttgtAATCGTTAGAAATATCATTCTGAATGTATTTTATTGGTCTT
GAACCTTTTTTAAGGTCAAAATCTATCCACATGCTTGCcttgtataacac
ggacctgacctgtaatacttgtattatacaTTACACATAAGTCACGCATG
TTAATAGCAGTTACCTTTTCAATGTCATTGGCATGTTACATATGTTATAC
AAAATACATATGTGTTAAAAATATTGATCTCATCTTTAAACAGCCCCtga
caggaaaatagctatttcacaatcgctatatcatatctcattatatctcc
tgcaccaccttgggtatgataacaaaaatTGACTAAATAGCTTCAaaggt
ttgtattttattaatataatatcaatatttttattccctatctcgtattt
ttgatgaaaatagtgTAACTCTAACATAACACctctcttggagcatttaa
atgttttcaaaatagcGTCATCATTTACAtaatagtcaggtagaattgca
taactacccagacaaaaatggtgtagagatgaaattttgcacaatataag
gtccaggaacatgtcaggaatcaccaaaaaaaaacCCACCCCCACGAAGA
TGGAAACACCCTCAAATCCATGATGGCGgacatggtacttttttctacaa
ttaatcaaggggggacccttgataactgatttttaatgtttttttttttt
gtttttttttattctttattttaagTTGGGTGGTATCTAGAAAATTACAA
GTAAGTTTCTAATCAAATCCAACTgtcataaaaacattaaaaatatatat
attgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGCAAAACATCCAGACTAATGGGCAATAGTTAAATGGTGAGAGAAT
ATAGGAGTTTATAAGAAGTTTTGCTTGATCTTCTGATAAAAAATGTCTCA
CCCTTCTCAGTGCCCTTAGTTTTTTGGTtctcaaatgtcaaaaataacta
gacaggcagttagtcacactaggaaatctagctttcagaaaaaacaacat
cagtcatctacaggatacatttcaacaacaaggatgagagttacctcaat
caagttcgcaagacaatattaattaaaacttgaaagttggaaacaaaata
aaacgtgcagcagccaaaatctccaaaatcaaccaaccaatatttgtcat
tcaattcccgagacagcgcttcgatttttaaggccttgtttatacgctaa
agtaaaaacaattacgcatatgtaaatgggtcattgtttgaggtccggca
gtgcgcggatctaggtgggtttcgcctcccccgtagatctttttcttggt
aagttgatcttcaaattagttttcaaggttggcttggctcaaattttatc
atctatggctcaaattttaggcaatttctcaaagtttttgaaaatgttaa
tttcattaaaaagcgccaggtTATTTTTAGGGGGGgatgttattttgcaa
aaatggcataaattcttagcccatttgtcaaaagcTGCCTTTGAGTataa
aacgaagaaaaaattatgttaaaacCCTGTGGTACCCTTTTCAAGGTTGC
CACGGGCAGGGTGCCACCGTGGCTCcgccagcaaaatcgaaatttcaaaa
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgaaatttcaaaaattttcaaaacatagtgaagtgacccctcat
ttgaaaggtattttcatgctggttaagaaaatcaatataatgAGGTTGAA
TAACACTGTCACGAAAAGTAATTTCCAACAGTTggcaaaattttgaggat
tttgctaaaaacgcaattttttgatcgtttttctTAAGTTAGTTCTTGTG
AGAGTGTCTTTCACCCTtacaatattgattttcttaatcagcatgaaaat
acctttcaaatgaggggtcacttcgCTATGTTTTAAAAATNaagtaaacg
atatagcgctttcgcagcattaatctttgatacgcattttggcgggacgc
tagtgtggccAACTGACAGGGAGATTCCTCTCGATGAgtatataaagaaa
attaaaaatcagttgtcaagggtccccccttgattaattgtagattctac
ctgactataataatttaaatgtcattttgtcaatatttgggattGATGGc
ttgtcatttttaaaaatcttctaaatagcgtattttgtataatatataat
tattataatatatAATCCATTGTGTATAAtgtttttagaaacattttatg
AATTATATATGTTGCGAGTGTGTTACAATTTTCCGGTCTGTCGTTTGtat
gacctgcgtcctgtgtcctgtctcCTGTGTTTCAAACTAACCgttttttt
gtcgaatttgtcgaaaATTTCTCGTTGTTGAACTTTGTGAAACTTAATAT
GTTtcgtcgaacttaatcgaatactcacaattttagtagcgacttttgaa
aagtttgattaaagaatttaatcgaacttttgtcgttcgattaagttcga
caaagttcgattagttcggtaatcgagctgttcgattaattacgtctggt
ttATCAGGCGAGGGGATGTCACGTTCTTATAAAGCATAATAAGGCCAAAT
AAGGCTAAAGCCATAGATACATAGAAATAGCAATCCTatcaaaatcctca
aaatttccAATAGCTTCGTtaaaatactttcaacaaaagaaatcttaccA
AGCACAGAGAAGGAAAATAGCAATAAATGAACAAGTTAAAACCTTACCTG
AACACCTGAACTGAATTGTTCTGGTAGCTAGCAGCTAAAAGTGAAACCAA
AAGCAAGCCAGCACCACATTCAAAGCACCACATTCAACACCAGTTTCGCA
GCACCACattcggcactttcgttttcgctccagcaccacattcggcactt
tcgttttcgctccagcaccacattcggtaattccagcaccacattcaact
ttctgcccaattttcatactgaaggagagtattcctattctggaaattat
gattcctatcaagccttatctaacagcttccatttaaagcaaaaatgaag
tctctatcaccatttctcTTCATAGCCTCGCGttataaagacacctcggt
agagtaccgaaaatcttaattttggtgttttggactagaaattgtactga
aggagagtattcctatcccggaaattatgattcctatcaagccttatctA
TCAACttccatttaaagccaaaatgaagtctctatcaccatttcctttca
cagcctcacgttttaaagacacctcggtagagtaccaACGAtcctaattt
tggtgttttggactaaaaattGTACTGAAGGAAAGTATTCCTATCccgga
aattatgattcctatcaagcttCATCTATTGGTttccatttaaagcaaaa
atgaagtctctatcaccatttctcTTCATAGCCTCGCGttataaagacac
ctcggtagagtaccgaatatcttaattttggtgttctgaactaaaaattg
tactgaaggagagtattcctatcctTGAAATTACAATTCCTATCAAGTTT
TATACATTGCCttccatttaaagccaaaataaagtctctatcaccatttc
cctactcagcctcacgttttaaagacacctcggcAGAGTAccgaaaattt
caattttggtatTCTGGCCTTTAAATTGTACAGAACTAGAAGAAGAGTAT
TCTTttcctggaaattatgattcctatctaGCTTAATATATTACCTTCCA
TTTAAAGCCAgaatgaagtctctatcaccatttcccttCACAGCCTcgcg
ttttaaagacacctcggtagagtgccGAATgtcttaattttggtgttttg
gactaaaaatcatactgaaggagagtattcctatactagaaattatgatt
cctatcaagcatTACCTATTACCTTCCATTTCAagccaaaatgaagtctc
tatcatCATTTCCCTTCccagcctcacgttttaaaggCACCTCGGCATCC
CGATTTGTTCAATGTATTGTTGGTTCCATCGTTCCCAcctcccaccgggt
ctgtgagatagGGATGTActatcatagaggtataaagaaagacaggagat
gaatttgtcggtaattggtcgttaaagatttcttttatgtaataaatcaa
aagaaattctaggctcgcccgatgaaatacgactttttagtagaactcaa
gtttgctctgaacattcttactatcagcatcgaagatttccagccttcta
atatatgagaataaaataaaatatggcTCCACGAAATAattttgcgttca
attttgtcatccattaaattttgttttgaaaagatattttctcaagccag
aaaatgaaaagttctttataagcaagcacacacaatttcagacccaattt
gtagacaaaaagtcgctggagaattttggaggtaagtattaagcaataga
gttcaccttgatgaaaatgttgatcgaaaaatcttgtcatttgatgaagg
attgcaaagtttacaggcccttttttaatccaaatattttcttacaccaa
tgtcagaaacaatgaatctcgtcccatcttatttccaacacttaagttag
ccattAAGATtttacctatcaacaaaagtgcatacctcgtaatattttta
atcgtagggcgagcatggttacaatagcatagttctcctgtttctttata
cctccatggtacTATATGGACATGGCCAgagctctttttaaaaaagtaaa
gcaaaaaaaataagttcAAATTTATTATTCACATgcttaaaacgctcaaa
aagatATACAAACAAGCCCTGATTCTGATACAAATTATGGACGACTCAGT
TTTCAGTTTACTCTAAAGAAAATACCTTTGCTCTCGCAGCAGTGGAGGGG
GAGGGTTAAGAAAATGGGGGTACGAAATGCCggtaattttttcttgaaat
tccttaatcttggtaaaaaaatccttaaaaacaggCTCTGGCAAAAAGTC
AATTAAATCTGACAATACTGGCAATATCGAAACGAATCgctggaaacttt
tttgtgcaAGCTAAATGGCCAGAGGTTGTAGAGTATGACTAGTGAGATTT
TGCTAAGTACCTGACTAGAAAAAACTGATGTTGTTTGATGACTCCAATTG
ATGCCCCTGTTTTGCTCCCAAAAATGGAATGACAAAAAACATAAGTGACT
ATGgaccatggttggcgccgaaGAGAAAACTATCTAATTTTGACCCTCTT
TTATTTGCTTCAATACGACCATAATTTGATTTTGTCAATAACAGAGGTTC
TTGAAAGTCCGTTAgggattaaaaatttctttttgtttttataaacgtGG
GGAGACCAGGGTCTTCCGCCTGCAATGACTCTGGGCCCTGCATCACGCAC
TAGATGTATAACCAGGCTTTTATCATAAGGAACGCTTCGAGAGAGATGGT
TAAACTAGTGTGATTCAAAGATGTTTATCTCCTATTACTATTAGAAACAT
AGCTGATTGCTTTGTACACCTGCACTTCGCTCCCCCTTTAAATATGGGAT
TGGTGTGTACCTCAGTTGTAGAACTGAACTGAATAGGGGAGCCTATCTCA
ACAGCTCCAGAGAAACCTTTTCtaacagtggggataaaaattcctatcga
aACCAGCGGGTACGGGCCAGTaagggtcccagcgggtctgtgacacaggg
gtgttacaCAGGGTAATCGCCTCTGTTGAACAAGGGATTATCTACACGTG
CACTTGACTCTTAGCGATTGCTGCACCCGAGAATTCGAGCAATATGCCGT
ATGCTGCGTGTTTAAACAGTCCTAATAATGTTAGGAGTTCAAATCTGTTT
TTCTTAGAGACTCCTTATCAATGGGAAAAAATCGGGAAGATTGGACGGCG
GTTAATAATTTGGGGTCAAAAGATAAAGAGGTTAGTTTGTACAATATGTC
TAttgtacaaaatttgaaataacaaagtgaaaacattttctttatgAAGT
CATTGATGAAGGCATCAATTATAATGTATGTCATCTTTATGAGTTATCAG
TGGCTGTTTTTAAGCTCCTCTTTTCGCCTTTTTTGGAACAAAGATACCGA
ATTACTGTACCGGTCTGTTTGAAAATATACCGGTAGATTACTGTGTAAAG
ATCAATACTGGAAGACGTCTCAAATAGCAGaataacggtaatttttcttt
cgaatACCAAAGATAAAAAAGGTCATTTAACGGAATACTGGCCTCTTGGA
AGCCCACCTATGTGCACCACACAccaacccccgggggggggcactcatat
gatctagcctacgtcatgtgcctcgcttaagggtagggtttttcagcatc
ccaaaatgcactgtaagggtgtgtttctgtgagatttcactgcaagggtc
gaattttgaaacaaattcaaagtaattgttaaaaagaaaggtttttactt
ctcgtttgtttgaaaaagtttctattgacTGATAATTACANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTAGTTTTGA
ATTAATTCATAAACcataaaatatatcataaaactAGCGGTCCCAAACGT
TGTCACAGACGACTCACAATCCAAAATATGCGAATAACCATGAAGTAAGG
CggctttgaaattttaacactACCACGTAACATTAAAATGAAGGGTTTAG
ACAAAAAATACGGCAAATTCTCAAACCATTTCTTATGAATATTATGAATA
TTCATTCGACTATGTATTTCATAATCTTGAAAgcaaaacattttcggtac
tctaccgaggtgtctttaaaacgtgaggctgtGAAAGGAAATagtgatag
agacttcattttggctttaaatggaagctaatagataaggcttgatagga
atcataatttccaggataggaatactctccttcagtacaaTTTCTAGTCC
AAAACACCcccaaaacaccaaaattaagattttcggtactctaccgaggt
gtctttataaCGCGAGGCTATGGAGAGAAATGGCGATAAAGACtttattt
tggctttaaatggaaGGTAATGTATATAGCTTGATAGGAATTataatttc
caggataggaatactttccttcagtacaatttttagttcagaacaccaaa
attaagatattcggtattctaccgaggtgtctttaaaacgtgaggctgag
tagggaaatggtgatagagacttcgtttttgctttaaatggaaactaata
tataaagtttgataggaatcataatttccaggataggaatactctccttc
agtacaatttttagtccaaaacaccaaaattaggaTCGTtggtactctac
cgaggtgtctttaaaacgtgaggctgtGAAAGGAAATagtgatagagact
tcattttggctttaaatggaagctgataaataaggcttgataggaatcat
aatttccgggataggaatactctccttcagtacaatttctagtccaaaac
accaaaattaagattttcggtactctaccgaggtgtctttataaCGCAAG
GCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGATagataaggcttgataggaatcataatttccagaatagg
aatactctccttcagtatgaaaattgggcagaaagttgaatgtggtgctg
gaattaccgaatgtggtgctggagcgaaaacgaaagtgccgaatGTGGTG
CTGCGAAACTGGTGTTGAATGTGGTGCTGGCTTGCTTTTGGTAAAAGTGA
AAGTTCGGCTGTAAaattcgaaaacgaaagtgttttTAAGTCCGCCATCT
TTAAAGAGAACTATTTAAATTAAAGACCAGATTCTAGCAGGAATCTCCAC
TGCGAAATGTGGAAGAAACGTAAGTTTTCCAGGTCTGTTCTTTGTTCGGA
AAAAAATGAGCtaataaaaattttgttgtttatcAACCACCGAATGTgac
ttttttggcaaaaacgttAAGAATTTTGCTGTGAATCTGTTAAATTTCAA
TCGACGAAAAGGTTTCTTCTTTGCAATCCAACAGGGATGGCCCCCAAGCC
AGCTTATCAAAAGGTAACTTTGAATCAAGGAATGCTTCTTTAATTTCAAA
GCCTAATAACGAAAAATACAAATAACCCTTTTTATCTTGCTTGCTTTTAT
ATGTTGATAAAAATGTACTGTGTGTGAGCTGCTCTGTCACATTAATGTAT
TCTTCAGATTTATATTACCTACCATTATTACCGTAAATGTCTAAAAACAT
TTTGAGGAATGGGCAAGTAGAAtactacaaggatccctacgcaGTTTGGA
GGAAGTACTCCGATCTGTGAAGCGTCTTTATGTCATCTTTATATGtcaca
tagaacaaaagaaaatagcaaaagaacaaagtaactaccgtaagttggtc
caATATCAACATCCCTTGTTTAATTCTGATACCCTTCTTTAAAGACATGA
ATAATATCATAGCATTAGCATACCATAGCATTgaataaagcatcttctga
aaatctcattcttccccataaaaatgcaaaaatgaaaaacaaagaagctt
TCGTTTTCTGATCGTCTTTTTAATCGGCCaggaagtgttataaaattcct
tatagaaagacacattctcctactaagaagcttcaaaaaagatgacgtaa
aaaaattgttaaaaagtatatataatatGTCATTTTATCAAACAATTTCG
TAAACTATATACGTCACAACCATGgagcgctgacttttagttttaatgac
tTGTTCTTGCTCGTTTGGATTCTGCAATAAAAGGAAAGttgttattgtga
actttgaacatgcttaaaaAATCAAGGTACTTCCACTACTGTAACTGcta
cgggatcctaagttaagtCTCAGGGTATGAATGctcctaagaaggccttc
ggccttatattgtgactctctagctccaaccctaacctatctgataataa
ccgaaccccttTCTTGGTCTGCAGATtggaaaatttcacttgcatcctgg
tggatgaatCATCTGCCAACCTACCGTGAGATGGGGTAACTTGCAtccag
tggaggctaacatacatagccctcaaatgaatgacctggctggtcattaa
aatacaaaagttaaatcaaaataaacctGATATACAGCATTTGCGGGTTG
TAAAAAATTATATCTTCTAATAATCATCAAAAGTgatgtcatgcataatt
atttttaatatCATTACTAGATTTAAAGATTACATGTCCACAGCCACCAA
ATGTCTGAATTCCACAAATTTTTTATTATACAACCACACTGTTTTATTTA
CTCGCAAGTTGGCGAGTAACTTGCCAAAAATACATGTGTTGGCAAATATG
AGATTCTGAAATGATAGAGAAGAGCTGCGAGTGGAGCTGCGCTGTAGTTC
ATTACtttcatttcttttgaaattttgctgctttgattagtcaggcattt
gatggctatgcaagtttccttCCACTGATGAGAGTTACAGGATCTCTCAC
AGTATGTACAGTatggacaaaaaagctttgtaagaaaaaacatttcaacT
TGCATTCATATAAATACCTGTCAATAACAATATGAGTATGATAGAAAGCC
TTTAAAATCAAACCGAAACAGTTTCCTTTGTCTAAAATATTGAtgaaaaa
gttgatgcaatcaggTTTGAAATTAGAAGTTGCCGATGTGAcccaataaa
attgaaaatagaaaaaagaagacttttacATTGCGATAAAAACATTTGAG
GGACATGCTCAGTCTTAAACTTAACAATTTCAATCTGAAGTTTCTAGCTC
TGGTatgaaaaaacaaaggaaaccaGTGCATTTTTTGAATCTCCGGAAAG
ACTTAAAAAATtcctgtttttttgtcaaatgaAGACTCAATAGATAGCcg
cttcaaaaacaaaacaaagacaaacttaaagaaaaaaatggtgACCTGAA
GAAAAATTCTGGCGAAAACATGCAAAAGGGAAATGAACATGGCTACTtcg
aaagaaaagaaagagagAAAAGAATTTTAATACGAGAAACttaatgaaaa
aatcaattagttGAAAAGCTTTTCGGCTCGCACCATCATAAGTTATCATG
ATCATAGAAGTAAAACCATATCTATGATGATGGGGTATAAAGCCATAAag
ttttttatctaattttcaaatatatttcaaCTTTATTAAAGTCAACATGG
TTCTTAGCACCCCAAATCACCATCACCCTGAATCAACGCAGCCATCACAA
ACACAAGAATTGCCAAAGTTGGCTCAtcttctcaaaaaaattactttcac
aatattaatttttaattttggcaggaTATTTTTATGACTAACTGAATGCT
TGTGCCCTAATCATCCTTTCCAGTTGTTTCACTCTTTCAATTTCATGAGG
CTAGTAAACTGGTTTTACAAACATCTTTAGATTTAAATCAACGTATTGTT
CATTTAGCTCAACAGTGAAGATGTGGATGATGATATCGTAGTAACCACAT
CAACTCCAACTACATCAACAGCAACTGCTTCTCTATCTACAACACAGTCA
ATAACAGAAACTACTGCTTCAACACCTACACCCACACAAGCACTTGATGA
CGCCCCACCACCCTACGAACCAAGCACAGATAACAATGAATCAGAAACAG
TACAACCGGCACAAACAGATGACCTTTTAAATCAATCACCACCACTTTAC
ACTGATATCGTCAAACTACCAACCTATAATGAATCACAAAATATTGATGA
TAGCGAGCCTGAAGATCACCAAGGCTTCAATAGNAATCACCACCACTTTA
CACTGATATCGTCAAATTACCTACCTATAATGAATCACAAAATATTGATG
ATAGCGAGCCTGAAGATCACCAAGGCTTCAATAGGGTAAGATCATTTTGT
TCCatattttattggaaaattgAAATTAGGGGCAGTGTGCATTTATACAA
TAGCTATCTCCATTAGGGAAAAGAAGTACCTTTTAAAAAAGTAAGgggtt
ttttgagattaaagGTCATCTTATACAATAATCTTATCGTATGGAAGAGT
AATTTCTTATAGACTCCTTAGAATTGATTATGAATACCACCTTTTATTTT
CAGATTCGTTTCTTCTTTGTGACTGGAGATAACCAAGGTAAGAGACTATT
TTCATTCTAATTGCTCGTTTGCTACTTAAAATAAGTTATATCCTTTTCAC
TGATTTGTTTAAAAGCATCTTGTTTTGCCTCACCTTACCGCTGGATGTAG
GTGtgttttatttttgacttttttcctttttagaaGTTACAGAAGAGAAT
GTTGGGACAGATATTGGTTTCATATTGTGCTTCCTTAGTAAGTTTCAAGT
CTACCGCTGTCATATTTTCACGTGTTCGACAGGTCCCATAAAAATGTAGC
ATCCAAACCTTTACTGTTTGTCAATTCAATCTCAATTTAAAGGTTCAGTT
CGACACGACTTTAAAACTTTATATTTCTTCAATTTACTTTCAGTGTCTTT
CATCTTTAACGGATTGGGATTCATTGTTGCATATTGTAGTACTAGCACGC
TTTCCTCACATTATGGTGCTTTTTCTGGCTTTGGATTATCTCTTGTCAAA
TGGGCTTTCATTGTAAAGGTAAAGTGTGGCTGCTACTCAAAATCTTTTGC
TTTGGGTCGcaaaaatctttttatcaaGCAATTAATCAAATAGAAAGTAT
TATGACTTTTGTCACACACATTCTGAATCTTTTTGAGATTCTTTCtaaag
aaaagttttatttgataGGAATAAAAACCAATATTTCTTGTTAAGGCTTA
TCCATTTTTTGATACTTATGATTTTGCTCCTCAAATAATTTTTATCCTTA
AATTTAATTATGTTCAGCATTATTTTACTTAAAATAAACCTCAATCTAAG
CTGATTTctttaaattgttcttttttatgcATTAATTCATAAGCGTCATT
GCTCCATTAAAAACAGTGTAGtatatattattttctttttctatttttca
ttttcactctTCATTTTTCAGCACAAGGAAATGCTAAAGGAATATTTCGA
TGGAAACGATTGGCTACTATATTGTGTAATTCTATTAGGTAATTAACTCA
ATTAACGCGTAATTGTTTTTTATTACTGTACAATAGGATGGATAcactct
tttttctcaattagTTACTGGTCTTGTTATTACAAATTAGAGTCCATGTC
ATTTAAGCTTTTTTTgaatagacaaacaatcaaaattaccaTGGTATAGA
ATTATCTATTTCATCAGTTTTAAATGTCAACCAGATGCCACTTTGAGTTT
TTCAGTAAGAATccaaaaagatgacaaaatgTGTCTCCTAATCCTTACaa
accttttttctttaaaatattctCTATAAAGAAGGTCAACACCTTCCTCA
CTTCCGATATGATCTATGTTAGAGAGCGGACTGTgacattttcacatttt
ttttttcaggttggATGATTTTCTTACGGGGTATGTTTGCGTACGCGCAG
CTCAAACGGTCCATCTTTTCGTCAAGAGCTCGTTTGAATCCACGACACAA
CGAAGAGAGTATCGAATAACTTATTCAatggattttattttgaagacatT
CATTTGAGTTATTTTAAACTTTGTTATACTTTGGAGCTATAACCTGAGAA
AGGGTGAAGTGAAGCGAAATAAGTGATTTATTTTTCTAGAAAATGGAATA
TGATAGAAACACCTTTTTCCCGCCCCTTACTACACCCTATTGGTTACAGG
TCAATTAAATACAAAAACACAAGGAGCACAGacataaaactgatttttca
gTCCCTTCAACTTTTTCTTTCAGACCTTTTATTGCTGCTACtgcaataaa
aagttttatgtCACTTAAAATCTATCAAGATATCACAACTCCTAGGCTGC
CAACTTTCGGTTTGTGCAGCGAAAAAACTGGCTTTTAGAATTGCAACCTT
GCAGCGCAGAAAAACTTGGTGAAATTCAtgcccttagagtgcattttctc
aaattttcaaatcttttaaaGCAAGAGATGGGTACCAGTCGGTCGATTTG
TTCTCCTTGTGAAATGNCTCTTTTAAAGCAAGAGATGGGTGCCAGTCGGT
CGGTTTGTGCTCCTTGTGAAATGTatgtaaatagaaaaaaatggtTTTAA
GTATTATTTTTCTAACACTCGTCAACAagcattattttgatttttgtcat
ttggtatattttaaagctttttgttTGATccaaaatgattaaaatgaatt
atgaaaaaatttcgcggagctaataaaatgaataattaTCCAAGTAAATT
TCAGAGCCCCGAAAGGGTGAATTTATACCTTTTGATTCCACCTTGGGAAC
TAGAACCGTTTTAATCAATTTCATCAGTAATATTTGCTTCAAACGATTTT
TTATGTGTGTGTAATCTTTGTAAATCtcttttagttttgatttttttttc
gcaaaACAAAATGTTGATTTTGGAAAATCCCACTTGAAGTCCAATTCTTt
cattttggcaaaa Coding sequence (CDS) from alignment at sc0000373:166073..181835+ >TCONS_00020892 ID=TCONS_00020892|Name=TCONS_00020892|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000373:166073..181835+ (Clytia hemisphaerica)
ATGGCCCCCAAGCCAGCTTATCAAAAGCTCAACAGTGAAGATGTGGATGA
TGATATCGTAGTAACCACATCAACTCCAACTACATCAACAGCAACTGCTT
CTCTATCTACAACACAGTCAATAACAGAAACTACTGCTTCAACACCTACA
CCCACACAAGCACTTGATGACGCCCCACCACCCTACGAACCAAGCACAGA
TAACAATGAATCAGAAACAGTACAACCGGCACAAACAGATGACCTTTTAA
ATCAATCACCACCACTTTACACTGATATCGTCAAACTACCAACCTATAAT
GAATCACAAAATATTGATGATAGCGAGCCTGAAGATCACCAAGGCTTCAA
TAGNAATCACCACCACTTTACACTGATATCGTCAAATTACCTACCTATAA
TGAATCACAAAATATTGATGATAGCGAGCCTGAAGATCACCAAGGCTTCA
ATAGGATTCGTTTCTTCTTTGTGAATGGCCCCCAAGCCAGCTTATCAAAA
GCTCAACAGTGAAGATGTGGATGATGATATCGTAGTAACCACATCAACTC
CAACTACATCAACAGCAACTGCTTCTCTATCTACAACACAGTCAATAACA
GAAACTACTGCTTCAACACCTACACCCACACAAGCACTTGATGACGCCCC
ACCACCCTACGAACCAAGCACAGATAACAATGAATCAGAAACAGTACAAC
CGGCACAAACAGATGACCTTTTAAATCAATCACCACCACTTTACACTGAT
ATCGTCAAACTACCAACCTATAATGAATCACAAAATATTGATGATAGCGA
GCCTGAAGATCACCAAGGCTTCAATAGNAATCACCACCACTTTACACTGA
TATCGTCAAATTACCTACCTATAATGAATCACAAAATATTGATGATAGCG
AGCCTGAAGATCACCAAGGCTTCAATAGGATTCGTTTCTTCTTTGTGAAT
GGCCCCCAAGCCAGCTTATCAAAAGCTCAACAGTGAAGATGTGGATGATG
ATATCGTAGTAACCACATCAACTCCAACTACATCAACAGCAACTGCTTCT
CTATCTACAACACAGTCAATAACAGAAACTACTGCTTCAACACCTACACC
CACACAAGCACTTGATGACGCCCCACCACCCTACGAACCAAGCACAGATA
ACAATGAATCAGAAACAGTACAACCGGCACAAACAGATGACCTTTTAAAT
CAATCACCACCACTTTACACTGATATCGTCAAACTACCAACCTATAATGA
ATCACAAAATATTGATGATAGCGAGCCTGAAGATCACCAAGGCTTCAATA
GNAATCACCACCACTTTACACTGATATCGTCAAATTACCTACCTATAATG
AATCACAAAATATTGATGATAGCGAGCCTGAAGATCACCAAGGCTTCAAT
AGGATTCGTTTCTTCTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020892-exon-sc0000373-1491911889:166073..166114 | TCONS_00020892-exon-sc0000373-1491911889:166073..166114 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:166073..166114 | TCONS_00020892-exon-sc0000373-1510915933:166073..166114 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:166073..166114 | TCONS_00020892-exon-sc0000373-1575043694:166073..166114 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:176357..176385 | TCONS_00020892-exon-sc0000373-1491911889:176357..176385 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:176357..176385 | TCONS_00020892-exon-sc0000373-1510915933:176357..176385 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:176357..176385 | TCONS_00020892-exon-sc0000373-1575043694:176357..176385 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:178780..179207 | TCONS_00020892-exon-sc0000373-1491911889:178780..179207 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:178780..179207 | TCONS_00020892-exon-sc0000373-1510915933:178780..179207 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:178780..179207 | TCONS_00020892-exon-sc0000373-1575043694:178780..179207 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:179426..179459 | TCONS_00020892-exon-sc0000373-1491911889:179426..179459 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:179426..179459 | TCONS_00020892-exon-sc0000373-1510915933:179426..179459 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:179426..179459 | TCONS_00020892-exon-sc0000373-1575043694:179426..179459 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:179606..179659 | TCONS_00020892-exon-sc0000373-1491911889:179606..179659 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:179606..179659 | TCONS_00020892-exon-sc0000373-1510915933:179606..179659 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:179606..179659 | TCONS_00020892-exon-sc0000373-1575043694:179606..179659 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:179816..179940 | TCONS_00020892-exon-sc0000373-1491911889:179816..179940 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:179816..179940 | TCONS_00020892-exon-sc0000373-1510915933:179816..179940 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:179816..179940 | TCONS_00020892-exon-sc0000373-1575043694:179816..179940 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:180344..180410 | TCONS_00020892-exon-sc0000373-1491911889:180344..180410 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:180344..180410 | TCONS_00020892-exon-sc0000373-1510915933:180344..180410 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:180344..180410 | TCONS_00020892-exon-sc0000373-1575043694:180344..180410 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1491911889:180782..181835 | TCONS_00020892-exon-sc0000373-1491911889:180782..181835 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1510915933:180782..181835 | TCONS_00020892-exon-sc0000373-1510915933:180782..181835 | Clytia hemisphaerica | exon |
| TCONS_00020892-exon-sc0000373-1575043694:180782..181835 | TCONS_00020892-exon-sc0000373-1575043694:180782..181835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:166073..181835 + |
Blast
BLAST of TCONS_00020892 vs. Swiss-Prot (Human)
Match: NFIP1 (NEDD4 family-interacting protein 1 OS=Homo sapiens GN=NDFIP1 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.308e-19 Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 2
Query: 404 PPLYTDIVKLPTYNESQNIDDSEPEDHQGFNRIRFFFVTGDNQEVTEENVGTDIGFILCFLMSFIFNGLGFIVAYCSTSTLSSHYGAFSGFGLSLVKWAFIVKHKEMLKEYFDGNDWLLYCVILLGWMIFLRGMFAYAQLKR 829
PP Y LP+Y+E++ +E R F D + + +G D F+L F M+F+FN +GF +++C T++ + YGA SGFGLSL+KW IV+ YFDG WL + ++LG+++FLRG YA++++
Sbjct: 64 PPSYNVATTLPSYDEAERTK-AEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRK 204
The following BLAST results are available for this feature:
|
