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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020884 ID=TCONS_00020884|Name=TCONS_00020884|organism=Clytia hemisphaerica|type=transcript|length=848bp
CTCGTGAGATGTGAGCGCCTATAAATAAGAATCAGAGTTTTGAGGAACAG
CAGTTCATTCATAAACAGTAGAATTAAATCGTAGAATAAAAACCAAGAAG
CAAAAAGAAGATTTATCAAATTGAGAACCTGAAATATCAAGAAGACTAAC
AATCCAATCCAACACAACGACAGACATGGAACAAAAAACACTGCTGATCC
AAATCATTGCACTTTTCAATATCATCCTTCTCACGAACACTGCATTAACA
ACAGATCCAAACAGTATGCCGTTAACTTCATGTTACCGCAGATGCGGGAT
GAGAAATCCAAATTGCCATTCTTTGAACGACAATAAATCACATCAATGCC
AACTTATGATAACCTGCATAAAATCTTGTTATGGTGAATACTTATCAGAG
CACAGGGATTACGTTAACCAACGTAGAGAATACGCCGTCAATAACAACGT
AGAGGAGACGGGATCTTTCACTGAAATGACCAACAAGAGAGCTGTTTACA
AAAGGGCGTGTTTGAGCCAATGTGATGCGGACAGATATATGTGTTTTCAT
TTGTCAGACACTGTAAGGGGAGTTTTCAGTTGCAATCTGTCTAATAATAT
GTGTAGAAGCAATTGCGCTTAAAAGTGCAAAGAAATTGAacgtaatattt
tttcaaagactaTTGTATTATCAAATTTAAAGCAATATTTTAATATTAGA
AGCTTTCTTCCTTCAAAAAGCCCAAATCAGATTACTCTATATTGAACTTG
GTCGAATCTAATCGAACTATTAAGTTCAGTCGAATACACAGGTtgtaaaa
attaaattctgaagacaaatcacgctttacTCGAAATTGTTATGTGGT Run BLAST on NCBI transcript from alignment at sc0000373:124751..126846+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020884 ID=TCONS_00020884|Name=TCONS_00020884|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at sc0000373:124751..126846+ (Clytia hemisphaerica)
CTCGTGAGATGTGAGCGCCTATAAATAAGAATCAGAGTTTTGAGGAACAG
CAGTTCATTCATAAACAGTAGAATTAAATCGTAGAATAAAAACCAAGAAG
CAAAAAGAAGATTTATCAAATTGAGAACCTGAAATATCAAGGTAAGATTT
TTATTGTCTTTGAGATTTTGGTGAGCCCaatttttgatttcataaaGTGA
TCCCGATGGGGAAATATATAATTCTTTATGAGTAAATTGTATATTTTGCG
TAGAGCAGATTTTACCCCTGGGACTATGCAAATGAATACAAAAATTGTaa
taagaattattttgaaaaatgactattCTAAAAGCTCTTTAAAATCACCC
CTTAGATAAATCTCCTAGAATCATGGTGCGTCTGGAAGgctaaaaacctt
tactttttCAACAATTTAGAAGTATCAAAGCGCTTTAACACCTGAACACA
GCTCTCCAACAGTTTAGACTTAGTCTAACTGTGGATTTGAAGTAAAATTT
GCTTTGATTCATAGCGTTTTTAGTGCTCTGAATGGTTTCTAACaattctt
gaaatttctttCCAATAAGAATTGCTAAACACTTTTTAAGacgatttttt
acttttaacaaTTCAAATAGGGGGTACTTAAGCCACAAAGAgggtaaaat
gtttttatatagtatCATTTTAAACTAGCAGAGTAAGATATAATACTTTT
CGCTTGCTTAACTATCGACAAGGTAATGATCAGACCACGGAGGGATAGGG
GAGAGGAGGGATAAACCATGTTCTGGGAGGGTGAATTAGGAGAATTTTTG
TTAAAAGGGCAAAGTATTGGCTCGTCTAGAAAGGAGGCAACTAATTCGAC
TTTAATTTCTAATTTTAGATCCTTACACATGGTTGAAATCCTAAcagttt
tctttttctattcCGAACTGATAGAGCCCACACCCTAAAATCGTCCGTTA
caatgatagtaaaggcgggaaaatattaTAGCGCGGAGCTTACAGCCGTT
ATGGCGGTAGACggaaaaaaaaatcggcgggagatgATCCAAGTATCCAA
GAATAtccaaaaagaaagatattatttCTTGGGATCACTCTTGTCTCAGT
TCAGTTTCTCTCTCCCgcctgtttttattttattttgattttttcaaata
ccGAACACACAGTTGGCGCCAAGTTATTTTGCGCCAAAATTGTAAGTTtg
gcaaactctaccggctgtaaattcttttcggcaaaaaaaaacaatttgtg
aATATTCTttggctttgggcttttttcttagatagtgattcgtcttaaaC
TATAGCATAGTCGAcctacacccctgcctcacagacATTTGGATGATCCT
TATCAATAATAAGTAGCTAATGTGTAACTCTTTTTTTAGAAGACTAACAA
TCCAATCCAACACAACGACAGACATGGAACAAAAAACACTGCTGATCCAA
ATCATTGCACTTTTCAATATCATCCTTCTCACGAACACTGCATTAACAAC
AGATCCAAACAGTATGCCGTTAACTTCATGTTACCGCAGATGCGGGATGA
GAAATCCAAATTGCCATTCTTTGAACGACAATAAATCACATCAATGCCAA
CTTATGATAACCTGCATAAAATCTTGTTATGGTGAATACTTATCAGAGCA
CAGGGATTACGTTAACCAACGTAGAGAATACGCCGTCAATAACAACGTAG
AGGAGACGGGATCTTTCACTGAAATGACCAACAAGAGAGCTGTTTACAAA
AGGGCGTGTTTGAGCCAATGTGATGCGGACAGATATATGTGTTTTCATTT
GTCAGACACTGTAAGGGGAGTTTTCAGTTGCAATCTGTCTAATAATATGT
GTAGAAGCAATTGCGCTTAAAAGTGCAAAGAAATTGAacgtaatattttt
tcaaagactaTTGTATTATCAAATTTAAAGCAATATTTTAATATTAGAAG
CTTTCTTCCTTCAAAAAGCCCAAATCAGATTACTCTATATTGAACTTGGT
CGAATCTAATCGAACTATTAAGTTCAGTCGAATACACAGGTtgtaaaaat
taaattctgaagacaaatcacgctttacTCGAAATTGTTATGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020884-exon-sc0000373-1491911889:124751..124891 | TCONS_00020884-exon-sc0000373-1491911889:124751..124891 | Clytia hemisphaerica | exon |
| TCONS_00020884-exon-sc0000373-1510915933:124751..124891 | TCONS_00020884-exon-sc0000373-1510915933:124751..124891 | Clytia hemisphaerica | exon |
| TCONS_00020884-exon-sc0000373-1575043694:124751..124891 | TCONS_00020884-exon-sc0000373-1575043694:124751..124891 | Clytia hemisphaerica | exon |
| TCONS_00020884-exon-sc0000373-1491911889:126140..126846 | TCONS_00020884-exon-sc0000373-1491911889:126140..126846 | Clytia hemisphaerica | exon |
| TCONS_00020884-exon-sc0000373-1510915933:126140..126846 | TCONS_00020884-exon-sc0000373-1510915933:126140..126846 | Clytia hemisphaerica | exon |
| TCONS_00020884-exon-sc0000373-1575043694:126140..126846 | TCONS_00020884-exon-sc0000373-1575043694:126140..126846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:124751..126846 + |
Blast
The following BLAST results are available for this feature:
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