TCONS_00020866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020866
Unique NameTCONS_00020866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020866 ID=TCONS_00020866|Name=TCONS_00020866|organism=Clytia hemisphaerica|type=transcript|length=3710bp
NNCTACTCTCGTTCCTTGACCCCCTCGGATGAAAACACTTTCTAGCCCCG
GTTCGCCAATTTGGGTGCCCTGACTGTCTCTGAGAACTAGGCTGCTAGAA
ACAAAAACCGTGGAGGGTCGCAGTTCGAGCCCTAAAAAACTCAATAAAAC
AACTTGAAACCATATAAACTTGAAAACGTATGTCACTCGAAAACGTATGT
AACCCGAAAACGCATACAACCTGAAAACGTGTGTAGCCCGAAAACGCATA
CAACCTGAAAACGTATGTAACCCAAAAACGCATACAACCTGAAAACGCAT
CCCACCTAAAAACGCATCCGACCTAAAAAACGCACCCCACCTAAAAACTT
ATACAACTTGAAAACGCATACAACCTGAAACCGTATGTAGCCTGAAAACT
TATACAACCCGAAAACGTATACAACCTGAAAACGTATGTGACCCGAAAAT
GTATGCAACTTGAAAACGTATGCAACTTGAAAACGTATACAACCCGAAAA
CGTATACAACCCGAAAACGTATACAACCCGAAAACGTATACAACTTGAAA
ACGTATACAACTTGAAAAGGTAAGGAATTTGAAAACGTaagcaattttta
aaaacttacgCAATTTGAAAACTTATGCAATTTGAAAACTTATGCAATTT
GAAATGTTTGCAACCTGAAAATGTATGAGATTACTCGATAATCGAATTTT
TTAATCTAATTGGGCAATTATATGCTAAAATACCTAAAATCCGAAATTGA
AAATCATATTCGTTTAAAAACAATATAACGtatcataaaatattttgcct
TTCGCGTAAATTCTAATTCTCCAAAAACAAAAAGGGAGGAAGAGAAGTTT
CGAGAATACGACTTGTAACAGGTTTGAACGACGTGTGATGCAAATAAcaa
aatctaccatttttatgaACACGCGAAACTCTCAATCTACAGAACggtaa
tagtaataataatttTAAACGCCCCTGACCACCTTTGGTTTTATACGAAA
ACGTAAATAAATACACTTATTTTCTTATCTACGAaacgaaaataaattaa
tttatttcctAATTCTTCTAAAATCTTGTCAAAGAcccaatgaaaattga
aaacacgATGAAACAACAACTGAAATCTCGATTTCGAGACAGATTTAATG
TATTCTAGTAGTAGTAGGAGCCGTACCAAATCCTGTCGACTAAGAGCATG
AAACAAAGTGCACTTTTGCTTGAACTGAGGAAGAATAGTTTTATAAATTG
ACAATAATTAACGCTAATTAACCCTTTATTTTTAGAAACGTATAATAAAC
TTCCATATTCTTTGATACATCTCTATTCTTGATACTTTCCAGACGTCAAC
GTCCATGTTTCGTCAAAAATCCTTTCTTTATACTGACATTAGAAGCTGCG
AACACAGCTGCTGACCTTAAACTGTGCAACCAATATAACGATTTGTGATA
AACCACGAATTCCAAAATTTGTTTCAACTCATCCCTGATTGTTGAGCATG
TAATCGACGCGTTTGCTTTTCCTAAAATCTGTGTAGATGTTAAAAACTCT
AAAAGTAAAAATGTTAGAATTAAGAACGTTCCTCCTTGTACCGAAATCTG
AATAACGTGATTATCAATTAGAAAAACGTGAAACGGAATGGCCAAAATAC
TGCTGCAAAGTCCAGTAAGGCACGATCAAAACACCTTTTGTTCTCCCTTT
AGAAGCTAGAAAATGCTTAATTGCTTTGGGAATTAAATAGATGGGTGATA
TAATATGACAAAATTCTCCTGTCCAATCAAAGGAAAAAGCATCTGTGTCT
TAAAACTTCCGGGGCAAAAATACTTGGAACAAAACCGATCACACTTTATG
TTGACACTGTCGGCAAATAAATCTATCGTTACTTTCCCCCAATTTTCTGT
ATCGcattcgcaaaattttgtttttataaaccaGTCTACTGTTTTACTTA
CTTCGTCTGCTTTCTCGTTGTATTTTCGAGCAATCCAAGTCACTGTCAAT
TTTATATCTTTTCTCTTACAAATCGTAAATACATCATTTGCCAACTGTTG
TAACAAACTTTAATTCTTGCCCATCCTGACAATTATGGCTGTACTTATGT
TATCTGCCGTATGAcacaaaattggtttattgtCTAAAAACTGGTCAATA
ACGACTCCATGGCATATTTAATAGCCAATAACTCCATGTACGTGGAACTC
TCCCCTCTTTCTATCTGTTGTAAATTGTTTATAACAAACATAATATTTAA
AATTGCTCCAATTCCCGTGGCGCTAGCATCTGAAAAGGTTTTTAACTGTG
GTACTTCATATTTTCTAATTGATCTTTTATTCAAATCACGTaagtttaat
tttcaaaataacaattCCCTAAGGACGTCGTGATAAAATGTCAAATCTAT
TCTCTTATCCCAAGACACTCTGAATTCTATTAATTTTGTAAATCAAACGA
GTTTTTAGACGAATAACATTTCTTAAAACGAATTTCATAGAAACTATTTT
TCCTGCTACACAAGATAACTCTCTTGCTGTGACGCGTGTTGGGTgtcgaa
aaatgttttcaagtgAAGTCAGTAAAGATTTGATGCGTTTTTCAGAAACA
gaatcacTGCTGCTTCCGATGTCCTGGTTACACCACAGATGTAACATTTG
TTAAGTGGGTTTAAGTACCTGATTGGATGGCTCTGGTTAATGTTGTGGAC
TGAAATAAAAAGGGCCCTTGAAAATTCATATGCCCACTTCATGCTGAGGA
ACACTTTGTTGTATCGACCGTGGCTGAGGCACCACTGGTAATCCTTGAAC
CTGGCTTGGATGAGATGGTGCGAATCTTTTGGTCGGCACTTGGCTGGCAA
GGCCTTGTTTGTGGTTTCTTTCGAAATGAACCTACCTTCTGCTCCTCGAA
GCTTGGAATCGTTATTCGAATCATCTGTAAAACCTTTGGGCAAATATTCA
TTGGTTGTGTCCCACCCTTCTATGGAACTATCTACGTACTTGATAATTTC
CTTGCGTTTAATTAATTGATCCTCAATTTTATCGACCACATAAGATAAAA
TTTTTGTCTCGTTATTTAGTTCGTATATATTTTGAACAAACATGTATTGG
TGCTTATTTGATATGTTTTCAAAGTCATATACAGATTGTTTAGTTTTCAT
AGTATTGATttgagcttttttttttttaaaaaagaattgtctTTTCCCCT
TTTTTCGTCTGCCCTGTCAAACTGTCTTCCAGgagattgaaaaaattttt
gctgacaaGCTATaggttcgaaaaaaaaaaaaaaaaaattaccttgttGA
GGTGTTTTACTGTTGTAGCCCCTTTGACCTCCTTGTGCTAATGGAGCCCC
TTGCTGTTGTGGTAAACTTTGGTTTTGTTGGTACCCTTAATTAGGGTTGT
ATCCCTTGTCTTACCGATGTCAAAATACCTTTATCAACAACAGCCATTAA
ATCGTCCGTCTCTGAAATGGTTGCTGAATGTGTTTGGGCCTTCTTCTTAG
GTGCCATATTATTTTAATAATCTTGAACATTGAAGTTTCGAGAATACGAC
TTGTAACAGGTTTGAACGACGTGTGATGCAAATAAcaaaatctaccattt
ttatgaACACGCGAAACTCTCAATCTACAGAACggtaatagtaataataa
tttTAAACGCCCCTGACCGCCTTTGGTTTTATACGAAAACGTAAATAAAT
ACACGTAGTT
Run BLAST on NCBI

transcript from alignment at sc0000373:28889..33616+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020866 ID=TCONS_00020866|Name=TCONS_00020866|organism=Clytia hemisphaerica|type=transcript|length=4728bp|location=Sequence derived from alignment at sc0000373:28889..33616+ (Clytia hemisphaerica)
NNCTACTCTCGTTCCTTGACCCCCTCGGATGAAAACACTTTCTAGCCCCG
GTTCGCCAATTTGGGTGCCCTGACTGTCTCTGAGAACTAGGCTGCTAGAA
ACAAAAACCGTGGAGGGTCGCAGTTCGAGCCCTAAAAAACTCAATAAAAC
AACTTGAAACCATATAAACTTGAAAACGTATGTCACTCGAAAACGTATGT
AACCCGAAAACGCATACAACCTGAAAACGTGTGTAGCCCGAAAACGCATA
CAACCTGAAAACGTATGTAACCCAAAAACGCATACAACCTGAAAACGCAT
CCCACCTAAAAACGCATCCGACCTAAAAAACGCACCCCACCTAAAAACTT
ATACAACTTGAAAACGCATACAACCTGAAACCGTATGTAGCCTGAAAACT
TATACAACCCGAAAACGTATACAACCTGAAAACGTATGTGACCCGAAAAT
GTATGCAACTTGAAAACGTATGCAACTTGAAAACGTATACAACCCGAAAA
CGTATACAACCCGAAAACGTATACAACCCGAAAACGTATACAACTTGAAA
ACGTATACAACTTGAAAAGGTAAGGAATTTGAAAACGTaagcaattttta
aaaacttacgCAATTTGAAAACTTATGCAATTTGAAAACTTATGCAATTT
GAAATGTTTGCAACCTGAAAATGTATGAGATTACTCGATAATCGAATTTT
TTAATCTAATTGGGCAATTATATGCTAAAATACCTAAAATCCGAAATTGA
AAATCATATTCGTTTAAAAACAATATAACGtatcataaaatattttgcct
TTCGCGTAAATTCTAATTCTCCAAAAACAAAAAGGGAGGAAGAGAAGTTT
CGAGAATACGACTTGTAACAGGTTTGAACGACGTGTGATGCAAATAAcaa
aatctaccatttttatgaACACGCGAAACTCTCAATCTACAGAACggtaa
tagtaataataatttTAAACGCCCCTGACCACCTTTGGTTTTATACGAAA
ACGTAAATAAATACACTTATTTTCTTATCTACGAaacgaaaataaattaa
tttatttcctAATTCTTCTAAAATCTTGTCAAAGAcccaatgaaaattga
aaacacgATGAAACAACAACTGAAATCTCGATTTCGAGACAGATTTAATG
TATTCTAGTAGTAGTAGGAGCCGTACCAAATCCTGTCGACTAAGAGCATG
AAACAAAGTGCACTTTTGCTTGAACTGAGGAAGAATAGTTTTATAAATTG
ACAATAATTAACGCTAATTAACCCTTTATTTTTAGAAACGTATAATAAAC
TTCCATATTCTTTGATACATCTCTATTCTTGATACTTTCCAGACGTCAAC
GTCCATGTTTCGTCAAAAATCCTTTCTTTATACTGACATTAGAAGCTGCG
AACACAGCTGCTGACCTTAAACTGTGCAACCAATATAACGATTTGTGATA
AACCACGAATTCCAAAATTTGTTTCAACTCATCCCTGATTGTTGAGCATG
TAATCGACGCGTTTGCTTTTCCTAAAATCTGTGTAGATGTTAAAAACTCT
AAAAGTAAAAATGTTAGAATTAAGAACGTTCCTCCTTGTACCGAAATCTG
AATAACGTGATTATCAATTAGAAAAACGTGAAACGGAATGGCCAAAATAC
TGCTGCAAAGTCCAGTAAGGCACGATCAAAACACCTTTTGTTCTCCCTTT
AGAAGCTAGAAAATGCTTAATTGCTTTGGGAATTAAATAGATGGGTGATA
TAATATGACAAAATTCTCCTGTCCAATCAAAGGAAAAAGCATCTGTGTCT
TAAAACTTCCGGGGCAAAAATACTTGGAACAAAACCGATCACACTTTATG
TTGACACTGTCGGCAAATAAATCTATCGTTACTTTCCCCCAATTTTCTGT
ATCGcattcgcaaaattttgtttttataaaccaGTCTACTGTTTTACTTA
CTTCGTCTGCTTTCTCGTTGTATTTTCGAGCAATCCAAGTCACTGTCAAT
TTTATATCTTTTCTCTTACAAATCGTAAATACATCATTTGCCAACTGTTG
TAACAAACTTTAATTCTTGCCCATCCTGACAATTATGGCTGTACTTATGT
TATCTGCCGTATGAcacaaaattggtttattgtCTAAAAACTGGTCAATA
ACGACTCCATGGCATATTTAATAGCCAATAACTCCATGTACGTGGAACTC
TCCCCTCTTTCTATCTGTTGTAAATTGTTTATAACAAACATAATATTTAA
AATTGCTCCAATTCCCGTGGCGCTAGCATCTGAAAAGGTTTTTAACTGTG
GTACTTCATATTTTCTAATTGATCTTTTATTCAAATCACGTaagtttaat
tttcaaaataacaattCCCTAAGGACGTCGTGATAAAATGTCAAATCTAT
TCTCTTATCCCAAGACACTCTGAATTCTATTAATTTTGTAAATCAAACGA
GTTTTTAGACGAATAACATTTCTTAAAACGAATTTCATAGAAACTATTTT
TCCTGCTACACAAGATAACTCTCTTGCTGTGACGCGTGTTGGGTgtcgaa
aaatgttttcaagtgAAGTCAGTAAAGATTTGATGCGTTTTTCAGAAACA
gagtaagttttatttttgaaattgaccTGTATACCCAACCCTTGAATCTC
AGTTACAGGCTTGGATAATCTATTGACAAACAATCGTctaaaaaacaagc
tattctgATTCCTTGAACACGCCAATACTTGATGAGGGCTAGCCTCTAAA
ACTTTCCTTCAAAACTGAACGTGTTTTCTCAAACTCCCTTTAACCCTTGA
ACTCTTTTCAAAGCATGATATATTATTCTTAGCCTTATTCATctcctgat
ttttttttttttttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
ttttttttttttttttttagatcacTGCTGCTTCCGATGTCCTGGTTACA
CCACAGATGTAACATTTGTTAAGTGGGTTTAAGTACCTGATTGGATGGCT
CTGGTTAATGTTGTGGACTGAAATAAAAAGGGCCCTTGAAAATTCATATG
CCCACTTCATGCTGAGGAACACTTTGTTGTATCGACCGTGGCTGAGGCAC
CACTGGTAATCCTTGAACCTGGCTTGGATGAGATGGTGCGAATCTTTTGG
TCGGCACTTGGCTGGCAAGGCCTTGTTTGTGGTTTCTTTCGAAATGAACC
TACCTTCTGCTCCTCGAAGCTTGGAATCGTTATTCGAATCATCTGTAAAA
CCTTTGGGCAAATATTCATTGGTTGTGTCCCACCCTTCTATGGAACTATC
TACGTACTTGATAATTTCCTTGCGTTTAATTAATTGATCCTCAATTTTAT
CGACCACATAAGATAAAATTTTTGTCTCGTTATTTAGTTCGTATATATTT
TGAACAAACATGTATTGGTGCTTATTTGATATGTTTTCAAAGTCATATAC
AGATTGTTTAGTTTTCATAGTATTGATttgagcttttttttttttaaaaa
agaattgtctTTTCCCCTTTTTTCGTCTGCCCTGTCAAACTGTCTTCCAG
gagattgaaaaaatttttgctgacaaGCTATaggttcgaaaaaaaaaaaa
aaaaaattaccttgttGAGGTGTTTTACTGTTGTAGCCCCTTTGACCTCC
TTGTGCTAATGGAGCCCCTTGCTGTTGTGGTAAACTTTGGTTTTGTTGGT
ACCCTTAATTAGGGTTGTATCCCTTGTCTTACCGATGTCAAAATACCTTT
ATCAACAACAGCCATTAAATCGTCCGTCTCTGAAATGGTTGCTGAATGTG
TTTGGGCCTTCTTCTTAGGTGCCATATTATTTTAATAATCTTGAACATTG
AAGTTTCGAGAATACGACTTGTAACAGGTTTGAACGACGTGTGATGCAAA
TAAcaaaatctaccatttttatgaACACGCGAAACTCTCAATCTACAGAA
CggtaatagtaataataatttTAAACGCCCCTGACCGCCTTTGGTTTTAT
ACGAAAACGTAAATAAATACACGTAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011702XLOC_011702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020866-exon-sc0000373-1491911889:28889..31490TCONS_00020866-exon-sc0000373-1491911889:28889..31490Clytia hemisphaericaexon
TCONS_00020866-exon-sc0000373-1510915933:28889..31490TCONS_00020866-exon-sc0000373-1510915933:28889..31490Clytia hemisphaericaexon
TCONS_00020866-exon-sc0000373-1575043694:28889..31490TCONS_00020866-exon-sc0000373-1575043694:28889..31490Clytia hemisphaericaexon
TCONS_00020866-exon-sc0000373-1491911889:32509..33616TCONS_00020866-exon-sc0000373-1491911889:32509..33616Clytia hemisphaericaexon
TCONS_00020866-exon-sc0000373-1510915933:32509..33616TCONS_00020866-exon-sc0000373-1510915933:32509..33616Clytia hemisphaericaexon
TCONS_00020866-exon-sc0000373-1575043694:32509..33616TCONS_00020866-exon-sc0000373-1575043694:32509..33616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:28889..33616 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.3566	14.2521	7.38981	5.61043	1.71485	1.93376	2.96999	3.11208	1.24961	2.22669	1.62803	0.942692	1.04461	0.674604	1.27555	1.01167	1.44203	2.0844	0.931873	0.82134	1.14107	0.601666	4.44366	3.97699	1.4892	2.13621	1.64344	1.35771	4.28576	3.66226
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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