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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020840 ID=TCONS_00020840|Name=TCONS_00020840|organism=Clytia hemisphaerica|type=transcript|length=215bp
TATTATATCTGTAAACTTGATATAGACACATGCCAACCTCATTTTCTCGA
TGCAAGTTCCACCATCTGGCAAAGGAGTACCGGATTTTCCATAGAACCTG
GAGCAAGTGGTCAAAGATGCGATCGACAAATTAAGACGGGATGGTATCGG
TTCAAAAGTCCTGCTGGTTCAATTATGCCCGAACAATGTCCTAATATCAA
TTCTTGCGGTAAGGC Run BLAST on NCBI transcript from alignment at sc0000371:178964..182574+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020840 ID=TCONS_00020840|Name=TCONS_00020840|organism=Clytia hemisphaerica|type=transcript|length=3611bp|location=Sequence derived from alignment at sc0000371:178964..182574+ (Clytia hemisphaerica)
TATTATATCTGTAAACTTGATATAGGTACGCCTATTTACTTTACCAAAAA
ATATGACTAAAATCGATTTGAGAAGGGCTGTAGTAAACTACTTCATAGAA
AGGGTTCGTTTTTTGAGTCCATGATATTTAACAACGTCACTTTAGTAATC
AACAAACGGCCGTTTTCTTCCCTTGCAGCAACTACTACAACAAgcaccac
aacaacaacaacaacaccacCAACGCCTCCATTGCCTCATATCGTTAATG
GTGAGCTTtataaatttgtaaacaaactgtatgcagcagatacaaaatca
aaacaaatgtcacatgtcaaaataaagtATCAagccaaatatggctaatt
ttgattgttcaattgttcaagtttgttttggacaagtGATTTTAATtaat
ctctttaatgacacgtggttcgcgcaatgtttacattttactactttaat
gtccctttaataagcaatttcaaaatattgtgacACGGGTAAAAACTGTG
TAGGAAAGGCTGCGCATTGTCAGGCCCTAATAGACCTATCGGAGTTttcg
atttttctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaa
tagaattcccttggggaattcctaagagatttctattttaatacactcga
aacaatcccacaatgcatcgcttttttagaaaaatcaaaaactccgataa
ggtctatccTTCCTAAAGTCTCACGCAATCCGAGTTCGAACAGGTAGCTT
TCGCACGACCTATATATGAAGATATAGAAAGACCAAGACACAACAAACTG
ACAAGATTGATCTCCACTTTGAGATATAAAataagaagtattttttttga
attaaaactttttacaaGAATGACGATTAGAAAATCAAATAGAACCTACT
TAGTATGTTAGTCACTATCTTCTAGATACGTGAAATTTGATCGTGTAATT
TCTTTCAAACATGAGCCCTTTGACGTGAACCCGTTCTCTTCTGctctctt
cttctttctttttctttttgttttcctcTTCCtccttttttttcatattt
ctggGCCCTTTTAAACCAATTGTCGGATAGGAAATTTCGTAATGAATTGT
CACTAGGACACGGACGGAAAACATATCGTGTGTTGTGTAATGTCATTCTG
GGGCCTAGCAGAAGTGTCGTTAGCCCCAAACGGCCTAAAAGTTTCTACTT
TTAGCAGTTAATGTTTCTAATTTATCAAATGAAAACGCTGCATCACAATA
TTCACTTAAAGAATCTGTGAGATCATAGCCCAAGGTCCATTTAAGGCTCT
TGGATAGACTGGATGGatcgattaagtggcccggtagtatttGCGGTAGT
TCACCATTCTGAGTCTTTTCTAGGTAGACTGTAAAACAGTAAATGGCAGC
CTAGCGCCATgaaaaagttatcagaaagaaaAGTTTAGTTAGAAGTAGAC
TCTAGATTAGTACAagcatcccagctggcacacaacgttgtttaaacgtt
aaTATAACGTTACTTATACGTACGTTGTgagcgttagataaacgttgaaa
caacgttgtgtgcctgctGGGATGGCTATAATTTTTTGATGCGGAATGAT
TTTCTAAAGAAATACCCTTTGCCCCCCCCCTCCGAGCTGCCGACTTTttt
attggggggggggtgaGGCAAAAAAGTGCCTCTGATTACTGATTTCAGTG
CCCCTTAGCTTCCTTCACATCTTAGAATCAGCAGCTTTtagcttaaaaga
aaaaatacctaaaaaattTCGTGCTCAATTCGCCCGCGATAGATTTCAgg
tttcaagttttagccccaaTTTTAGTCGACCCGCCCATTGAATTtcaagc
tcgaagggctagagaCAAAACTTAAATCCTTCTCAAGCAAGAGAAactga
aaccacttatttcccatcgaaaacgcgcatagaacgcgccgtaatcaaaA
CGACGAATTGTATCTTGCCGTTCTTATGTTTTGgaagactacattttttg
aaacctAGTGATGGATTTTAGTTTTAATTCGGCATTTATGTAAAAACTAT
GCGCGGACGTTCTgggtgggaaataagtggtttcatttcccatccaggag
tcacgcatctagcccttcgggtttgaAACTCAATGAACCCATCTTGATAC
TGCATCATCCAACTTATTTATTTACAAAGGTTATAAATATCATTGGTTAT
ATCCAAATTATTCACTGATATGACTTTTTTACATATAGTTTTTGAACCCT
CCAACCATTAATACTTggtaaaaagtttagaaatgcAATGTGCACTTGCA
AGGctcacccagctggcacacgacgttgttttaacgttcatctaacgtta
tatggacattgtgaacgttagataaacgttgaaacaacgttgggtGACCG
CTGGGTATCCAACTGACACAATCTCAATCACAATATGGCAAAGTCCCTGA
TTATTTAGAAATCTAGTCAAGCTGCAATTAATGGCAATTGTTCATGTAAA
GCACGTTATAAAAATGGAATCACGCTTGTTTTATGCAAACACCTAAATCA
GTCCCGGCACCAGGTTAAAATTTCCCTTAGATAAGTATTGTTCCTCTACA
ACCaaaaaaatacagttgacgctctctaattcgacgttctactattcaat
aGGCTCCCTTAAATTCGATGATAGTtataaagtccccgtcaacgagaaac
tctcataaacgacccTTCCTTAtccgataagctcccttattcgatgaaaa
tccaattccttgaagatcgaattagagagcgccaaCTATACTTAGAAATG
AGGGAAGTTCCTCTTACACCTTCATTCGGCGTTTTTTTCTAGTCAAAATA
CAGACTAGGAAGGTAAAAGCTGTACAGTGAAATTATTAATGCCCTGTTTC
CAGAAGATCACTTCTAACCGATATTCCTCAGCGAGTTAATCATGAATGTT
TTAAAGTAGACCCGCGGGGGAGCCCTAAAGCTAAGCGACCTACCGTAGGC
GTGGCCCTCTTTCCAGGCTTCCTAAATTGTACTTTATAGGTTTAAATGAG
CATTTATTAAGACGCCCCCTTctccactgggaacccttcctactagaaaa
aatggttgaaatattgtcccggtggaaaattataataGATTTTTGTCCCC
GTTGAAGATAATGATATAAGCCCCACTGCAaaataatgttttattttttc
catccctactgaattttctgTCTGGAAAACTATgtaattcaaatccccag
caataaaaaacatgggaataacaatcctcatcgagttttggtccgttatt
tttatccccactggctgatataatcatactgggtctgtgagaagagggtg
tataTCAAAATCTAGTCACAATTTAACATTTATTACAcaattttacttta
tatttttgttattatCATTAGACACATGCCAACCTCATTTTCTCGATGCA
AGTTCCACCATCTGGCAAAGGAGTACCGGATTTTCCATAGAACCTGGAGC
AAGTGGTCAAAGATGCGATCGACAAATTAAGACGGGATGGTATCGGTTCA
AAAGTCCTGCTGGTTCAATTATGCCCGAACAATGTCCTAATATCAATTCT
TGCGGTAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020840-exon-sc0000371-1491911889:178964..178988 | TCONS_00020840-exon-sc0000371-1491911889:178964..178988 | Clytia hemisphaerica | exon |
| TCONS_00020840-exon-sc0000371-1510915933:178964..178988 | TCONS_00020840-exon-sc0000371-1510915933:178964..178988 | Clytia hemisphaerica | exon |
| TCONS_00020840-exon-sc0000371-1575043694:178964..178988 | TCONS_00020840-exon-sc0000371-1575043694:178964..178988 | Clytia hemisphaerica | exon |
| TCONS_00020840-exon-sc0000371-1491911889:182385..182574 | TCONS_00020840-exon-sc0000371-1491911889:182385..182574 | Clytia hemisphaerica | exon |
| TCONS_00020840-exon-sc0000371-1510915933:182385..182574 | TCONS_00020840-exon-sc0000371-1510915933:182385..182574 | Clytia hemisphaerica | exon |
| TCONS_00020840-exon-sc0000371-1575043694:182385..182574 | TCONS_00020840-exon-sc0000371-1575043694:182385..182574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000371 | supercontig | sc0000371:178964..182574 + |
Blast
The following BLAST results are available for this feature:
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