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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020804 ID=TCONS_00020804|Name=TCONS_00020804|organism=Clytia hemisphaerica|type=transcript|length=887bp
AGGagattttcatgaaaataacattttggTTTGGagatcataaaaaataa
aaaatatgaaaaactctttttggttgctttggttgaaaatatttttctaa
taatGATTCCATACTGATGCCATTGAAGCTGAGAAAATCTACCAGgtTTG
AAAGAAGCAGAAGATCCGAAAAGAaccaaaagaagaagaaaacatcTCAC
TTCGGTCAAGAATTATTAGAGGCTGTATCAATCGTTACTCTACTGGCAAC
TTTTGGACCATTATGGAGTACCTGGTACCTCTTGGTAGTCACTGCATTCT
TGGTTTTTATTATTGGTATTGTGTACAAAACTGGTGAACGCAACGGACAA
GTTTTTCTGAAATTCAAGAAATCAGTTAACAAACTCAACAAGAAGCGAGT
TACTATACAAGGTTCAAGACCAAGGTTAATGACAAGGACTTCGTCACTTA
GTAATGTCGTTTTCCAGGATAATATTCCGAACTTGATTAATGATAAATAT
CATTgcatttctggcaaaactggaCGAAACTCGGCATCAAAGCCAGTGAG
GAGGCgtcaaaagaaaacaaaatatagCGCTTTGGTGAATTGCTTTATCA
GGAAATTGACAAGAAGTTTGAGTACCTCATCCAACAGAAATGCATCTTAT
GCGGATGTCAAGGTCAAacgaaaaatgatgaaaaaatcaCGGACACTTTA
AAATGGGTTACACCTCTTTTTCGGGTTGTTTACAAATGGTGAAGTTAGAT
TTAATGCAGACAAAAATTCTCGCTCGGCTTTGATCCTACaacaaaaagtg
taaaaaactcgggcaaaaaataatgaaagtttgaaggttcatttaaaaac
aatattGACAATCCATTGACTGATTCTATAACGACAT Run BLAST on NCBI protein sequence of TCONS_00020804-protein >TCONS_00020804-protein ID=TCONS_00020804-protein|Name=TCONS_00020804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MPLKLRKSTRFERSRRSEKNQKKKKTSHFGQELLEAVSIVTLLATFGPLW
STWYLLVVTAFLVFIIGIVYKTGERNGQVFLKFKKSVNKLNKKRVTIQGS
RPRLMTRTSSLSNVVFQDNIPNLINDKYHCISGKTGRNSASKPVRRRQKK
TKYSALVNCFIRKLTRSLSTSSNRNASYADVKVKRKMMKKSRTL Run BLAST on NCBI transcript from alignment at sc0000370:250212..251303- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020804 ID=TCONS_00020804|Name=TCONS_00020804|organism=Clytia hemisphaerica|type=transcript|length=1092bp|location=Sequence derived from alignment at sc0000370:250212..251303- (Clytia hemisphaerica)
AGGAGATTTTCATGAAAATAACATTTTGGTTTGGAGATCATAAAAAATAA
AAAATATGAAAAACTCTTTTTGGTTGCTTTGGTTGAAAATATTTTTCTAA
TAATGATTCCATACTGATGCCATTGAAGCTGAGAAAATCTACCAGGTTAC
TGTTGTTTTAATTAATTCATAAGAAGTTTTAAATCTATAGCCAGTTGTGG
GGTGGGGGTGCTTGAAGGAATCAGGTATTAGGTGCTGAGTATGCACTCTC
TTAGGACCATTCGGGTTCTCTCAGGGTACAAATGTGTCGAATGTTTTCTT
GCACTTTCATGGCTAGTTTTTGAAGATAGTCTGTTTTTTTCAATTTTAAG
GTTTGAAAGAAGCAGAAGATCCGAAAAGAACCAAAAGAAGAAGAAAACAT
CTCACTTCGGTCAAGAATTATTAGAGGCTGTATCAATCGTTACTCTACTG
GCAACTTTTGGACCATTATGGAGTACCTGGTACCTCTTGGTAGTCACTGC
ATTCTTGGTTTTTATTATTGGTATTGTGTACAAAACTGGTGAACGCAACG
GACAAGTTTTTCTGAAATTCAAGAAATCAGTTAACAAACTCAACAAGAAG
CGAGTTACTATACAAGGTTCAAGACCAAGGTTAATGACAAGGACTTCGTC
ACTTAGTAATGTCGTTTTCCAGGATAATATTCCGAACTTGATTAATGATA
AATATCATTGCATTTCTGGCAAAACTGGACGAAACTCGGCATCAAAGCCA
GTGAGGAGGCGTCAAAAGAAAACAAAATATAGCGCTTTGGTGAATTGCTT
TATCAGGAAATTGACAAGAAGTTTGAGTACCTCATCCAACAGAAATGCAT
CTTATGCGGATGTCAAGGTCAAACGAAAAATGATGAAAAAATCACGGACA
CTTTAAAATGGGTTACACCTCTTTTTCGGGTTGTTTACAAATGGTGAAGT
TAGATTTAATGCAGACAAAAATTCTCGCTCGGCTTTGATCCTACAACAAA
AAGTGTAAAAAACTCGGGCAAAAAATAATGAAAGTTTGAAGGTTCATTTA
AAAACAATATTGACAATCCATTGACTGATTCTATAACGACAT Coding sequence (CDS) from alignment at sc0000370:250212..251303- >TCONS_00020804 ID=TCONS_00020804|Name=TCONS_00020804|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000370:250212..251303- (Clytia hemisphaerica)
GTTTGAAAGAAGCAGAAGATCCGAAAAGAACCAAAAGAAGAAGAAAACAT
CTCACTTCGGTCAAGAATTATTAGAGGCTGTATCAATCGTTACTCTACTG
GCAACTTTTGGACCATTATGGAGTACCTGGTACCTCTTGGTAGTCACTGC
ATTCTTGGTTTTTATTATTGGTATTGTGTACAAAACTGGTGAACGCAACG
GACAAGTTTTTCTGAAATTCAAGAAATCAGTTAACAAACTCAACAAGAAG
CGAGTTACTATACAAGGTTCAAGACCAAGGTTAATGACAAGGACTTCGTC
ACTTAGTAATGTCGTTTTCCAGGATAATATTCCGAACTTGATTAATGATA
AATATCATTGCATTTCTGGCAAAACTGGACGAAACTCGGCATCAAAGCCA
GTGAGGAGGCGTCAAAAGAAAACAAAATATAGCGCTTTGGTGAATTGCTT
TATCAGGAAATTGACAAGAAGTTTGAGTACCTCATCCAACAGAAATGCAT
CTTATGCGGATGTCAAGGTCAAACGAAAAATGATGAAAAAATCACGGACA
CTTTAAATGCCATTGAAGCTGAGAAAATCTACCAGGTTTGAAAGAAGCAG
AAGATCCGAAAAGAACCAAAAGAAGAAGAAAACATCTCACTTCGGTCAAG
AATTATTAGAGGCTGTATCAATCGTTACTCTACTGGCAACTTTTGGACCA
TTATGGAGTACCTGGTACCTCTTGGTAGTCACTGCATTCTTGGTTTTTAT
TATTGGTATTGTGTACAAAACTGGTGAACGCAACGGACAAGTTTTTCTGA
AATTCAAGAAATCAGTTAACAAACTCAACAAGAAGCGAGTTACTATACAA
GGTTCAAGACCAAGGTTAATGACAAGGACTTCGTCACTTAGTAATGTCGT
TTTCCAGGATAATATTCCGAACTTGATTAATGATAAATATCATTGCATTT
CTGGCAAAACTGGACGAAACTCGGCATCAAAGCCAGTGAGGAGGCGTCAA
AAGAAAACAAAATATAGCGCTTTGGTGAATTGCTTTATCAGGAAATTGAC
AAGAAGTTTGAGTACCTCATCCAACAGAAATGCATCTTATGCGGATGTCA
AGGTCAAACGAAAAATGATGAAAAAATCACGGACACTTTAAATGCCATTG
AAGCTGAGAAAATCTACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020804-exon-sc0000370-1575043694:251159..251303 | TCONS_00020804-exon-sc0000370-1575043694:251159..251303 | Clytia hemisphaerica | exon |
| TCONS_00020804-exon-sc0000370-1575043694:250212..250953 | TCONS_00020804-exon-sc0000370-1575043694:250212..250953 | Clytia hemisphaerica | exon |
| TCONS_00020804-exon-sc0000370-1510915933:251159..251303 | TCONS_00020804-exon-sc0000370-1510915933:251159..251303 | Clytia hemisphaerica | exon |
| TCONS_00020804-exon-sc0000370-1510915933:250212..250953 | TCONS_00020804-exon-sc0000370-1510915933:250212..250953 | Clytia hemisphaerica | exon |
| TCONS_00020804-exon-sc0000370-1491911889:251159..251303 | TCONS_00020804-exon-sc0000370-1491911889:251159..251303 | Clytia hemisphaerica | exon |
| TCONS_00020804-exon-sc0000370-1491911889:250212..250953 | TCONS_00020804-exon-sc0000370-1491911889:250212..250953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:250212..251303 - |
Blast
The following BLAST results are available for this feature:
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