TCONS_00020712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020712
Unique NameTCONS_00020712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020712 ID=TCONS_00020712|Name=TCONS_00020712|organism=Clytia hemisphaerica|type=transcript|length=1932bp
TGGAGATCGTGATGATGATGAAAACATCCATTTCGAAATACCAACTATTG
TATCAGTGGATGAAGAAGGTTTGGAGCATGTGAAAGCAGAAAGTTTTGCT
GATGACACTACAAAGAAATATCCCCAAAGGAAAAGAAATAGTACAAAGAT
GTACCAGCGAAAATATGCCTTCTTAAAACACCAGGCAATTTGTGTTATGA
AAGAGTTGGAGGCTGGCGATGCTGTTGTTAATGAAAATGCTAAACACACT
GTTATAAAAGATCAAAATGcttttgaagCAGCAGGGATACGTCTTGTCAA
GGAAGCGCTGGATGATGTCAAGAAAGATAAGGATCTCCAAAATGTGGAGC
CTGGAAAAAAAGCTTCAGATCTAGCTGCAATGATTCTGTCTGTTGATGAA
AATGAATTGGATGAAATTTCTAAATACTTTTGTAACAAAATGTATATGTA
TGTCAAGTACCACAAGCAGATGAAGACAGATTACCTTGCaacaaaatttc
ataatatGGCCCTTGATGATGGAAATGATAATCCCTTCTATCAGCTTATT
GAAAAATTCTTCCCAGATAATGTGTCACACGTATCAGTATTTTCTGAAGC
ACTTCTTACAAAAGACCTTAGCTTTCTGTATAAAGCCAAATGATGAAGTT
GTGGATGTAAGAAAAATTGCAATGACAAAAGATGAGGAATCTACCCTGAG
ATATGTGGCAGGATAtctcatattttcaaaaacatcatcTCAAGCAAGAG
CAGTCACTGCCCTCCTTGAGCAGCTTGCTTCAAAGAATGATGATGATCTT
GGTGACAGAATTTCGTTAAACGATTTTACGTGCCACTGGGTAGAACAAAT
AAATCGAGGCGGGCTAATGAAAATCACGGAtgatttttattcttttgtaa
AGCTAATGGAAAATCTAGCACGAATTGTCTTgaacaaaaaaactttgatt
CGTTACTGTGGTGATGATATACGGAAAGTGGTAATCGAAAGATTCAGTAC
TAATGTCACGTTAAGAGAAAAATGGAATGCTTTAGCCATTGGACTTAGGA
ATAAAGATTTATCACAAAAAGTACTTGCAGCAATTTTCTGGAAATGGGCA
AACTTGAGAATTCACACCTTCATAAAAAATTGGTTGGAAATTCGCAAAAA
TGAAATCTTCAAAAAGGGAGAGGAAGTTACAGAGAAAGCGGCACCCGCCA
TGAGAAAATTACTTAAGGCAAAACGAAGATTGAAAGCTGGAACTAAAGCA
AAGCCCACCCAAAGTTTAGCAAAAAACTCAGCTGCAAAACTTGCTGCAAA
AAAAACTGTTCAAAAGTATAAAAGAACTAATGCCAAGAAAACGAAATGAT
taagaaatttttggaaaattttattcACTTCATAGATAACTACAGTAAGT
AATAACATTGGATCTTGCCCAAAGATTCTTTTGTACATATAATTTTGGAG
ACTCTCGTACCTCAGATGCACTGTTTCTAATCGAAACTCTACGGTTTAAA
ATGCGAATCATTTTAGACTATTATTGAGagataaattttgtttttctgtg
gccatattttttcactttttcaccaAGAAGTTTTTACaataatcagcaaa
aaaattttctcttgtTTGTTTTCGCAAGAATACTTGAAAAGCGTTTGATG
TATTCTTGGTTTTTGTTGAGAGCTTGGTCTGCCAAGAATTATTACACTTG
AAGATGTTTTGTGGAAAATTAAATTCATCATTTCTATACTTTCTAGAATT
AACTTTGGAATTCAACTTGATGAGAGAATGAATGAACGTAATATTTTTCC
TTCTTAATTTTTCTTACCTTTTTTGAACTCATGCCTTTATTTGTACCCTA
ATTATTGACCTATTATTTTATATCTCATAACAATTTAACACCACTTGATT
TTGTGTAGATACTAATTACTTTGTTTATTATT
Run BLAST on NCBI

protein sequence of TCONS_00020712-protein

>TCONS_00020712-protein ID=TCONS_00020712-protein|Name=TCONS_00020712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MMEMIIPSISLLKNSSQIMCHTYQYFLKHFLQKTLAFCIKPNDEVVDVRK
IAMTKDEESTLRYVAGYLIFSKTSSQARAVTALLEQLASKNDDDLGDRIS
LNDFTCHWVEQINRGGLMKITDDFYSFVKLMENLARIVLNKKTLIRYCGD
DIRKVVIERFSTNVTLREKWNALAIGLRNKDLSQKVLAAIFWKWANLRIH
TFIKNWLEIRKNEIFKKGEEVTEKAAPAMRKLLKAKRRLKAGTKAKPTQS
LAKNSAAKLAAKKTVQKYKRTNAKKTK
Run BLAST on NCBI

transcript from alignment at sc0000363:309216..312204-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020712 ID=TCONS_00020712|Name=TCONS_00020712|organism=Clytia hemisphaerica|type=transcript|length=2989bp|location=Sequence derived from alignment at sc0000363:309216..312204- (Clytia hemisphaerica)
TGGAGATCGTGATGATGATGAAAACATCCATTTCGAAATACCAACTATTG
TATCAGTGGATGAAGAAGGTTTGGAGCATGTGAAAGCAGAAAGTTTTGCT
GATGACACTACAAAGAAATATCCCCAAAGGAAAAGAAATAGTACAAAGAT
GTACCAGCGAAAATATGCCTTCTTAAAACACCAGGCAATTTGTAAGTAAA
CTTCATGCAAGAAAGAAAGCTATTCTTGCTTAATGCCGTCAATCCAGCCA
TCTTTCACACAAGGTATGCAACATTCACACCCTCTAAAATGGACATTTTT
CTGGTCTAAAGAATGTTTGTTTTATTTGGAAACCTGAAAATGAGTCATTA
AGTTTAAGATTCAAAGTCACAAACCCCCCAAAAAAATGATTAAAAAGGGG
TGTGAATGTTTCAGGCCTTGTGTGAAAGTTGGCTGACGGTGGTCACCATA
ACTTAAAGAGGTTTCCAGGAAGTTTGTTTTTCGTTAAAGGGCTATGATTT
TGATTTTAAATTTCAATCCTATAGCTCTACAAACAGTTCATAAAAAATTT
CCCAATTTGCATGCATAGTTCTTTCAAAATTCAAAATTGGAAAATAGCCT
GTGGATCCAGGAATAACTGCCTATAACTTATTGAAGGGATTTCTTCTTTC
AAACAGTTTCCTGGTCTGTTTCTTTCTATTCCAAGTTGAACCGGCAATGC
TGCATAATGAGACTTCCGCACAGAGAGAGTTATATGCCGGTGGTATGCGC
ATAATAAACTATGTTTATGAATTTTAGGTAATAAGTATTCATTTTAAAAA
TTCAAAACACATTCTACGTCTTTGTAATTTTTTAATACTTCAGGTGTTAT
GAAAGAGTTGGAGGCTGGCGATGCTGTTGTTAATGAAAATGCTAAACACA
CTGTTATAAAAGATCAAAATGGTAAGTAGTACTTTCCTGCTCAATTCAGT
ACATGTTGCATAGCTTAAAAAAACACCAAAGTAGAAAAACTGGTTTCTCT
TAAGATACCTTTATTGAAATTTCGGGAAAAAGTAGACACTTTTGAGAAAT
GTTGGAATTTTAGCGCCATTCAGTGTTACTTTTTTCTTGAATTCTGGCAA
ATACTTTTTTTAATTAGTCCTACTTATAGACCATTTTTGGGATCTTCAGC
CAAAAAAACACTCCAGGTGGTCAGCAAGGGTAGTACCCTGGGAATTTTTA
TTATTATTTTGATAAAAACTAATTTCCTGGTCTAGATTTGTATCCCAAGC
ATGAAATTTTTGTTTACTTTAAGATCTATTATGATGATATTCTTTTTGAT
TCAGATGCCTTTCTATTTTTTTTTAGCTTTTGAAGCAGCAGGGATACGTC
TTGTCAAGGAAGCGCTGGATGATGTCAAGAAAGATAAGGATCTCCAAAAT
GTGGAGCCTGGAAAAAAAGCTTCAGATCTAGCTGCAATGATTCTGTCTGT
TGATGAAAATGAATTGGATGAAATTTCTAAATACTTTTGTAACAAAATGT
ATATGTATGTCAAGTACCACAAGCAGATGAAGACAGATTACCTTGCAACA
AAATTTCATAATATGGCCCTTGATGATGGAAATGATAATCCCTTCTATCA
GCTTATTGAAAAATTCTTCCCAGATAATGTGTCACACGTATCAGTATTTT
CTGAAGCACTTCTTACAAAAGACCTTAGCTTTCTGTATAAAGCCAAATGA
TGAAGTTGTGGATGTAAGAAAAATTGCAATGACAAAAGATGAGGAATCTA
CCCTGAGATATGTGGCAGGATATCTCATATTTTCAAAAACATCATCTCAA
GCAAGAGCAGTCACTGCCCTCCTTGAGCAGCTTGCTTCAAAGAATGATGA
TGATCTTGGTGACAGAATTTCGTTAAACGATTTTACGTGCCACTGGGTAG
AACAAATAAATCGAGGCGGGCTAATGAAAATCACGGATGATTTTTATTCT
TTTGTAAAGCTAATGGAAAATCTAGCACGAATTGTCTTGAACAAAAAAAC
TTTGATTCGTTACTGTGGTGATGATATACGGAAAGTGGTAATCGAAAGAT
TCAGTACTAATGTCACGTTAAGAGAAAAATGGAATGCTTTAGCCATTGGA
CTTAGGAATAAAGATTTATCACAAAAAGTACTTGCAGCAATTTTCTGGAA
ATGGGCAAACTTGAGAATTCACACCTTCATAAAAAATTGGTTGGAAATTC
GCAAAAATGAAATCTTCAAAAAGGGAGAGGAAGTTACAGAGAAAGCGGCA
CCCGCCATGAGAAAATTACTTAAGGCAAAACGAAGATTGAAAGCTGGAAC
TAAAGCAAAGCCCACCCAAAGTTTAGCAAAAAACTCAGCTGCAAAACTTG
CTGCAAAAAAAACTGTTCAAAAGTATAAAAGAACTAATGCCAAGAAAACG
AAATGATTAAGAAATTTTTGGAAAATTTTATTCACTTCATAGATAACTAC
AGTAAGTAATAACATTGGATCTTGCCCAAAGATTCTTTTGTACATATAAT
TTTGGAGACTCTCGTACCTCAGATGCACTGTTTCTAATCGAAACTCTACG
GTTTAAAATGCGAATCATTTTAGACTATTATTGAGAGATAAATTTTGTTT
TTCTGTGGCCATATTTTTTCACTTTTTCACCAAGAAGTTTTTACAATAAT
CAGCAAAAAAATTTTCTCTTGTTTGTTTTCGCAAGAATACTTGAAAAGCG
TTTGATGTATTCTTGGTTTTTGTTGAGAGCTTGGTCTGCCAAGAATTATT
ACACTTGAAGATGTTTTGTGGAAAATTAAATTCATCATTTCTATACTTTC
TAGAATTAACTTTGGAATTCAACTTGATGAGAGAATGAATGAACGTAATA
TTTTTCCTTCTTAATTTTTCTTACCTTTTTTGAACTCATGCCTTTATTTG
TACCCTAATTATTGACCTATTATTTTATATCTCATAACAATTTAACACCA
CTTGATTTTGTGTAGATACTAATTACTTTGTTTATTATT

Coding sequence (CDS) from alignment at sc0000363:309216..312204-

>TCONS_00020712 ID=TCONS_00020712|Name=TCONS_00020712|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000363:309216..312204- (Clytia hemisphaerica)
ATGATGGAAATGATAATCCCTTCTATCAGCTTATTGAAAAATTCTTCCCA
GATAATGTGTCACACGTATCAGTATTTTCTGAAGCACTTCTTACAAAAGA
CCTTAGCTTTCTGTATAAAGCCAAATGATGAAGTTGTGGATGTAAGAAAA
ATTGCAATGACAAAAGATGAGGAATCTACCCTGAGATATGTGGCAGGATA
TCTCATATTTTCAAAAACATCATCTCAAGCAAGAGCAGTCACTGCCCTCC
TTGAGCAGCTTGCTTCAAAGAATGATGATGATCTTGGTGACAGAATTTCG
TTAAACGATTTTACGTGCCACTGGGTAGAACAAATAAATCGAGGCGGGCT
AATGAAAATCACGGATGATTTTTATTCTTTTGTAAAGCTAATGGAAAATC
TAGCACGAATTGTCTTGAACAAAAAAACTTTGATTCGTTACTGTGGTGAT
GATATACGGAAAGTGGTAATCGAAAGATTCAGTACTAATGTCACGTTAAG
AGAAAAATGGAATGCTTTAGCCATTGGACTTAGGAATAAAGATTTATCAC
AAAAAGTACTTGCAGCAATTTTCTGGAAATGGGCAAACTTGAGAATTCAC
ACCTTCATAAAAAATTGGTTGGAAATTCGCAAAAATGAAATCTTCAAAAA
GGGAGAGGAAGTTACAGAGAAAGCGGCACCCGCCATGAGAAAATTACTTA
AGGCAAAACGAAGATTGAAAGCTGGAACTAAAGCAAAGCCCACCCAAAGT
TTAGCAAAAAACTCAGCTGCAAAACTTGCTGCAAAAAAAACTGTTCAAAA
GTATAAAAGAACTAATGCCAAGAAAACGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011614XLOC_011614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020712-exon-sc0000363-1575043694:312014..312204TCONS_00020712-exon-sc0000363-1575043694:312014..312204Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1575043694:311284..311361TCONS_00020712-exon-sc0000363-1575043694:311284..311361Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1575043694:309216..310878TCONS_00020712-exon-sc0000363-1575043694:309216..310878Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1510915933:312014..312204TCONS_00020712-exon-sc0000363-1510915933:312014..312204Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1510915933:311284..311361TCONS_00020712-exon-sc0000363-1510915933:311284..311361Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1510915933:309216..310878TCONS_00020712-exon-sc0000363-1510915933:309216..310878Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1491911889:312014..312204TCONS_00020712-exon-sc0000363-1491911889:312014..312204Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1491911889:311284..311361TCONS_00020712-exon-sc0000363-1491911889:311284..311361Clytia hemisphaericaexon
TCONS_00020712-exon-sc0000363-1491911889:309216..310878TCONS_00020712-exon-sc0000363-1491911889:309216..310878Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020712-proteinTCONS_00020712-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:309216..312204 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.350042	0.381504	0.233138	0.0456179	5.99782	5.81474	3.30907	3.46966	1.9607	2.08477	1.06392	1.46732	1.08184	0.81063	1.3212	1.50569	1.17476	1.09319	1.16008	1.28266	1.03523	1.107	0.708266	0.998546	0	0.118381	1.43993	1.53673	0.571351	0.419124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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