TCONS_00020546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020546
Unique NameTCONS_00020546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020546 ID=TCONS_00020546|Name=TCONS_00020546|organism=Clytia hemisphaerica|type=transcript|length=1544bp
TAATTTTTCATAATAAACTTCAAGATCCTGACTCTATAACGGTGGTTACA
GAAGGAGACCCACCGCCGGACAAAAGACGCTGAAAGGTCCATggaacgtt
atatggacgtccTGAATGTTGAATGGACGTGGTTTGGATGTTTTGGGACG
ACTGGACAGGAAAAGGAAAACCATGGAAATCTGATTGTGAAAAATGGACA
TTTTCTTTTAATCTTCATAAACAATAACGACACAAACAGCTTAAAAACAA
GACGAAATGAAAGCTATCATTTTGCTGGTATTACTTGGTTTATTCAAACT
ACACGCTGCAGAGGTACTGGATGCTGATGGGAATCCTTTAAGTGATGACG
AAATCCGAGAGATTGGTAATGCTGTTCCAAGTCCATTTAACCTTCCATTC
TCTAAAGAAATCAAAGCAAAAGATGTTGTTATCAAAGACCCACATGCTGT
ATCCCTCTCTGGATCATTAAGTGCATTAGCTCCAACTTACCCACCTGAAG
TGGATCACGATGAAGgcaacaataaatttatttctaaatttaaaattata
agcCAAACTAAGAAGAGATCAAACTCAACAGTAACACGACCACCACATCT
TCATCAAAAGGACTCAGACAAAATCGAACAAAAACGACTTCATCGTTTGA
GAATCGCACGACGCAAACAACGACTTCACCGACTTAACAAACTTAGACAT
AATCGTAGAAAACGACCTCACCATAGAAGACCTCATAAGAAACCAACCAA
AAAGCCAACTGAAAAACCGACTGAAAAACCAACCGAAAAACCGACCGAAA
AACCAACTACAAAGAAGCCACATAGAAAACGACCTCACCATAGAAGACCT
CACCATAAAAGACCTCATAAGAAACCAACCAAAAAGCCAACTGAAAAACC
AACTGAAAAACCGACCGAAAAACCAACTACAAAGAAACCACATAGAAAAC
GACCTCACCACAAAAGACCTCATAAGAAACCGACCGAAAAACCGACCGAA
AAACCGACCGAAAAGCCGACTGAAAAACCGACGGAAAAGCCACATGATCC
TCACGACCACCACAAACCCGACAATCCAAACTTTTGCCGTGATGCAGGTA
TCTCATGTGATAGATCATGTACCGGATGTGAACCAGCTGGATTCTGTATC
ATGCCCGAAAAAAACCACCACGCAATCAGATGCGTTTGTAACTTCGGATG
GACTGGTAAAAATGCAGTGTTCATGAAACCCTCAGCTGATTCGAAACTCA
ATAATATTATTATTGCTGACGACTGTAGTGTTGCATGTCAAAACACCAAT
GACCGAAAAGGaacCAAATGCGCCAAAACGCAACACTGACAACACAAAAA
CAAATACTTGCAGCTTTTGACTAGCCTGCAAAACTTGGGACATTTTATCA
TAGTATgattttataaagactttgtaaAAGTTCTcgtcttttcaattttt
ttatattctatATTTTTTTACATACTGAATTGAAGCATATAATACTGTAT
ATTCGTAACgacgcaaaaaaataaaatatactcATCATCCCGAA
Run BLAST on NCBI

transcript from alignment at sc0000358:31721..35330+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020546 ID=TCONS_00020546|Name=TCONS_00020546|organism=Clytia hemisphaerica|type=transcript|length=3610bp|location=Sequence derived from alignment at sc0000358:31721..35330+ (Clytia hemisphaerica)
TAATTTTTCATAATAAACTTCAAGATCCTGACTCTATAACGGTGGTTACA
GAAGGTACTCAAAATTAACGATGGAGAGcttttcttttattattattccT
TTTATGGAAATAATTGCTCTCCGTCATAAAGAGTTTTGAGTACTTTCTAT
AAACGACGTTGTTCTATACAAGGATACTTTCAGGAGACCCACCGCCGGAC
AAAAGACGCTGAAAGGTCCATggaacgttatatggacgtccTGAATGTTG
AATGGACGTGGTTTGGATGTTTTGGGACGACTGGACAGGAAAAGGAAAAC
CATGGAAATCTGATTGTGAAAAATGGACATTTTCTTTTAATCTTCATAAA
CAATAACGACACAAACAGGTAATTAAAATAATACAGAGGTACAAATCTAT
TCAATTTCTCTTAATCCCTTTTATCCCTTTCTTTTGTTGATTATGATAAA
CTTCCATTACAAAAACATTCATTTGTTACAAACgatgaaaatctttttgt
tcTATTGTTCTATTGTTTTCGCTCGTAATTACCAAACTTCATTTTCtcca
aagaaaaacaacaaacattttcattcaaaacaGAGTGCaggaaatttaaa
acaatgcAATTGTAAAACTCGAACGCAGTATAAAATGTTAGCCCATCCCA
ATTATTGAGACATAGATTTTTTGTGGTTTTCAGCTTAAAAACAAGACGAA
ATGAAAGCTATCATTTTGCTGGTATTACTTGGTTTATTCAAACTACACGC
TGCAGAGGTACTGGATGCTGATGGGAATCCTTTAAGTAAGAttaatttta
aaggttttgtttttaaataagaatgatatcgtttgcttactcatcaattt
taatttacaagcttttggatattgaattgacacggatgtggatttttttt
tgcttatatcagcataataggcagacactgtcctagTATGAAACATACGT
CTGATATGAAGCGGGAACACCTTCAAGTTTCAGAATTATGGCTCGAAGTA
TATGGTCACTcgctttttaaacattttctcaTCACGCGACGTTAAAAAGC
TATAAACCGTTGAGAAGATACATCTTAAGAGAGTGatataaaagattttt
gaacaaCGTGTGACGGCtattttcggtcatttttggcCGTTTTAGCCCTA
CTTCATAGGACTGTAACTTTTTATCGAagagaaatataaaaaactGAACA
CAGATATAAAATCAGCTAAGGTTTAAAATAATATTCTTAAAGTGTCATTT
TCGAACCATCACTAGTagaacaaatttctttttttatttttttattcttt
atctttgttcttcatttttcagttttttgaaattttgttaacattttggA
TTAGTTTTCTCGGAAATATTTTTCCGATGGCGTTTGATTTTAACCTAAAA
GTACATTAAGTTATACAAACCACAAAGAAGAACCGAAAGCAGCCGACGTT
GCTACCTTTtattttccgatgtgttctgagtgtatgtttcagctagaaat
tttgatctgttctgattagagCTTCGTAAATCAATTAACTAGAAATTTTA
ACGTGTTTTGATGATACAGGGGTATATGAGGGTATATGATATCTAAGTAa
ccagaacacatcttttaaggagacaggggtaaAAAACCAAGacaaaattg
atgtaatcttgttgcctagtaaccctagagAGGTTCAGAATACATCTGCC
ATGGGAAAAAAATCCAACGTCTTAAAGTTAtctatagaaaaacaaaactt
tttgatttcagAACACGTTCAAACATAAAATAATGATAACCTTACGAAGA
CAAAacaaaggtttcctagaaatcagaacacatcattagtATGTGTATCC
TCGAAGAAAAACTACCCATTTTTCTTGAGAGTCAAAGATATACATATATT
AGCCTTTTTAACCATTTTCTTACATTTACACATTTCAGGTGATGACGAAA
TCCGAGAGATTGGTAATGCTGTTCCAAGTCCATTTAACCTTCCATTCTCT
AAAGAAATCAAAGCAAAAGATGTTGTTATCAAAGACCCACATGCTGTATC
CCTCTCTGGATCATTAAGTGCATTAGCTCCAACTTACCCACCTGAAGTGG
ATCACGATGAAGgcaacaataaatttatttctaaatttaaaattataagc
CAAACTAAGAAGAGATCAAACTCAACAGTAACACGACCACCACATCTTCA
TCAAAAGGACTCAGACAAAATCGAACAAAAACGACTTCATCGTTTGAGAA
TCGCACGACGCAAACAACGACTTCACCGACTTAACAAACTTAGACATAAT
CGTAGAAAACGACCTCACCATAGAAGACCTCATAAGAAACCAACCAAAAA
GCCAACTGAAAAACCGACTGAAAAACCAACCGAAAAACCGACCGAAAAAC
CAACTACAAAGAAGCCACATAGAAAACGACCTCACCATAGAAGACCTCAC
CATAAAAGACCTCATAAGAAACCAACCAAAAAGCCAACTGAAAAACCAAC
TGAAAAACCGACCGAAAAACCAACTACAAAGAAACCACATAGAAAACGAC
CTCACCACAAAAGACCTCATAAGAAACCGACCGAAAAACCGACCGAAAAA
CCGACCGAAAAGCCGACTGAAAAACCGACGGAAAAGCCACATGATCCTCA
CGACCACCACAAACCCGACAATCCAAACTTTTGCCGTGATGCAGGTATGT
TTATGCCATATTTTTCTGTTTAGATTAAAATTAAGACGGGAATTCCACTT
CCACTCAATTAAGAAAGTGTTTCTGTACTTCGAACTCAAACTACGCGGct
ttcgtttgtttgaAAAATCTTATAAATTATTCTCAAATCCCCTTTTGACT
TATGGAGAAAGTTCTCAATTCTTTGAAGATTGAATAAGAAGCGATGTATT
TCAATGTTTTAATTGTGCCACGCTGCTTGTTCAAAGTTTAAAGTGATACA
TCGACCATTTAACTGGCTAGTTAAATATTAGCTTcttgttttcctttttc
aatataattttttcATATCTTAAAAGGTATCTCATGTGATAGATCATGTA
CCGGATGTGAACCAGCTGGATTCTGTATCATGCCCGAAAAAAACCACCAC
GCAATCAGATGCGTTTGTAACTTCGGATGGACTGGTAAAAATGCAGTGTT
CATGAAACCCTCAGCTGATTCGAAACTCAATAATATTATTATTGCTGACG
ACTGTAGTGTTGCATGTCAAAACACCAATGACCGAAAAGGGTAAGTTCCT
AATTGCATAAATTTCTGCTCATTTCTAACGAAAAACTTTCTTACAGATTT
ATTAACTACTCATTCGCTCGATTCCACAATTTTACTATTCATTCTAAAAT
AATaatatcatatttttcaattttcagaacCAAATGCGCCAAAACGCAAC
ACTGACAACACAAAAACAAATACTTGCAGCTTTTGACTAGCCTGCAAAAC
TTGGGACATTTTATCATAGTATgattttataaagactttgtaaAAGTTCT
cgtcttttcaatttttttatattctatATTTTTTTACATACTGAATTGAA
GCATATAATACTGTATATTCGTAACgacgcaaaaaaataaaatatactcA
TCATCCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011535XLOC_011535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020546-exon-sc0000358-1491911889:31721..31774TCONS_00020546-exon-sc0000358-1491911889:31721..31774Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1510915933:31721..31774TCONS_00020546-exon-sc0000358-1510915933:31721..31774Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1575043694:31721..31774TCONS_00020546-exon-sc0000358-1575043694:31721..31774Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1491911889:31904..32088TCONS_00020546-exon-sc0000358-1491911889:31904..32088Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1510915933:31904..32088TCONS_00020546-exon-sc0000358-1510915933:31904..32088Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1575043694:31904..32088TCONS_00020546-exon-sc0000358-1575043694:31904..32088Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1491911889:32404..32505TCONS_00020546-exon-sc0000358-1491911889:32404..32505Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1510915933:32404..32505TCONS_00020546-exon-sc0000358-1510915933:32404..32505Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1575043694:32404..32505TCONS_00020546-exon-sc0000358-1575043694:32404..32505Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1491911889:33659..34414TCONS_00020546-exon-sc0000358-1491911889:33659..34414Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1510915933:33659..34414TCONS_00020546-exon-sc0000358-1510915933:33659..34414Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1575043694:33659..34414TCONS_00020546-exon-sc0000358-1575043694:33659..34414Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1491911889:34747..34960TCONS_00020546-exon-sc0000358-1491911889:34747..34960Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1510915933:34747..34960TCONS_00020546-exon-sc0000358-1510915933:34747..34960Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1575043694:34747..34960TCONS_00020546-exon-sc0000358-1575043694:34747..34960Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1491911889:35098..35330TCONS_00020546-exon-sc0000358-1491911889:35098..35330Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1510915933:35098..35330TCONS_00020546-exon-sc0000358-1510915933:35098..35330Clytia hemisphaericaexon
TCONS_00020546-exon-sc0000358-1575043694:35098..35330TCONS_00020546-exon-sc0000358-1575043694:35098..35330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:31721..35330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	2.13873	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top