TCONS_00020545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020545
Unique NameTCONS_00020545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020545 ID=TCONS_00020545|Name=TCONS_00020545|organism=Clytia hemisphaerica|type=transcript|length=1622bp
TAATtaaatttgtttcttttattcaGGACACTATTATTGATTGATCTGTC
AGCTATTGAATAATGGATAATTTTTCATAATAAACTTCAAGATCCTGACT
CTATAACGGTGGTTACAGAAGGATACTTTCAGGAGACCCACCGCCGGACA
AAAGACGCTGAAAGGTCCATggaacgttatatggacgtccTGAATGTTGA
ATGGACGTGGTTTGGATGTTTTGGGACGACTGGACAGGAAAAGGAAAACC
ATGGAAATCTGATTGTGAAAAATGGACATTTTCTTTTAATCTTCATAAAC
AATAACGACACAAACAGCTTAAAAACAAGACGAAATGAAAGCTATCATTT
TGCTGGTATTACTTGGTTTATTCAAACTACACGCTGCAGAGGTACTGGAT
GCTGATGGGAATCCTTTAAGTGATGACGAAATCCGAGAGATTGGTAATGC
TGTTCCAAGTCCATTTAACCTTCCATTCTCTAAAGAAATCAAAGCAAAAG
ATGTTGTTATCAAAGACCCACATGCTGTATCCCTCTCTGGATCATTAAGT
GCATTAGCTCCAACTTACCCACCTGAAGTGGATCACGATGAAGgcaacaa
taaatttatttctaaatttaaaattataagcCAAACTAAGAAGAGATCAA
ACTCAACAGTAACACGACCACCACATCTTCATCAAAAGGACTCAGACAAA
ATCGAACAAAAACGACTTCATCGTTTGAGAATCGCACGACGCAAACAACG
ACTTCACCGACTTAACAAACTTAGACATAATCGTAGAAAACGACCTCACC
ATAGAAGACCTCATAAGAAACCAACCAAAAAGCCAACTGAAAAACCGACT
GAAAAACCAACCGAAAAACCGACCGAAAAACCAACTACAAAGAAGCCACA
TAGAAAACGACCTCACCATAGAAGACCTCACCATAAAAGACCTCATAAGA
AACCAACCAAAAAGCCAACTGAAAAACCAACTGAAAAACCGACCGAAAAA
CCAACTACAAAGAAACCACATAGAAAACGACCTCACCACAAAAGACCTCA
TAAGAAACCGACCGAAAAACCGACCGAAAAACCGACCGAAAAGCCGACTG
AAAAACCGACGGAAAAGCCACATGATCCTCACGACCACCACAAACCCGAC
AATCCAAACTTTTGCCGTGATGCAGGTATCTCATGTGATAGATCATGTAC
CGGATGTGAACCAGCTGGATTCTGTATCATGCCCGAAAAAAACCACCACG
CAATCAGATGCGTTTGTAACTTCGGATGGACTGGTAAAAATGCAGTGTTC
ATGAAACCCTCAGCTGATTCGAAACTCAATAATATTATTATTGCTGACGA
CTGTAGTGTTGCATGTCAAAACACCAATGACCGAAAAGGaacCAAATGCG
CCAAAACGCAACACTGACAACACAAAAACAAATACTTGCAGCTTTTGACT
AGCCTGCAAAACTTGGGACATTTTATCATAGTATgattttataaagactt
tgtaaAAGTTCTcgtcttttcaatttttttatattctatATTTTTTTACA
TACTGAATTGAAGCATATAATACTGTATATTCGTAACgacgcaaaaaaat
aaaatatactcATCATCCCGAA
Run BLAST on NCBI

transcript from alignment at sc0000358:31654..35330+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020545 ID=TCONS_00020545|Name=TCONS_00020545|organism=Clytia hemisphaerica|type=transcript|length=3677bp|location=Sequence derived from alignment at sc0000358:31654..35330+ (Clytia hemisphaerica)
TAATtaaatttgtttcttttattcaGGACACTATTATTGATTGATCTGTC
AGCTATTGAATAATGGATAATTTTTCATAATAAACTTCAAGATCCTGACT
CTATAACGGTGGTTACAGAAGGTACTCAAAATTAACGATGGAGAGctttt
cttttattattattccTTTTATGGAAATAATTGCTCTCCGTCATAAAGAG
TTTTGAGTACTTTCTATAAACGACGTTGTTCTATACAAGGATACTTTCAG
GAGACCCACCGCCGGACAAAAGACGCTGAAAGGTCCATggaacgttatat
ggacgtccTGAATGTTGAATGGACGTGGTTTGGATGTTTTGGGACGACTG
GACAGGAAAAGGAAAACCATGGAAATCTGATTGTGAAAAATGGACATTTT
CTTTTAATCTTCATAAACAATAACGACACAAACAGGTAATTAAAATAATA
CAGAGGTACAAATCTATTCAATTTCTCTTAATCCCTTTTATCCCTTTCTT
TTGTTGATTATGATAAACTTCCATTACAAAAACATTCATTTGTTACAAAC
gatgaaaatctttttgttcTATTGTTCTATTGTTTTCGCTCGTAATTACC
AAACTTCATTTTCtccaaagaaaaacaacaaacattttcattcaaaacaG
AGTGCaggaaatttaaaacaatgcAATTGTAAAACTCGAACGCAGTATAA
AATGTTAGCCCATCCCAATTATTGAGACATAGATTTTTTGTGGTTTTCAG
CTTAAAAACAAGACGAAATGAAAGCTATCATTTTGCTGGTATTACTTGGT
TTATTCAAACTACACGCTGCAGAGGTACTGGATGCTGATGGGAATCCTTT
AAGTAAGAttaattttaaaggttttgtttttaaataagaatgatatcgtt
tgcttactcatcaattttaatttacaagcttttggatattgaattgacac
ggatgtggatttttttttgcttatatcagcataataggcagacactgtcc
tagTATGAAACATACGTCTGATATGAAGCGGGAACACCTTCAAGTTTCAG
AATTATGGCTCGAAGTATATGGTCACTcgctttttaaacattttctcaTC
ACGCGACGTTAAAAAGCTATAAACCGTTGAGAAGATACATCTTAAGAGAG
TGatataaaagatttttgaacaaCGTGTGACGGCtattttcggtcatttt
tggcCGTTTTAGCCCTACTTCATAGGACTGTAACTTTTTATCGAagagaa
atataaaaaactGAACACAGATATAAAATCAGCTAAGGTTTAAAATAATA
TTCTTAAAGTGTCATTTTCGAACCATCACTAGTagaacaaatttcttttt
ttatttttttattctttatctttgttcttcatttttcagttttttgaaat
tttgttaacattttggATTAGTTTTCTCGGAAATATTTTTCCGATGGCGT
TTGATTTTAACCTAAAAGTACATTAAGTTATACAAACCACAAAGAAGAAC
CGAAAGCAGCCGACGTTGCTACCTTTtattttccgatgtgttctgagtgt
atgtttcagctagaaattttgatctgttctgattagagCTTCGTAAATCA
ATTAACTAGAAATTTTAACGTGTTTTGATGATACAGGGGTATATGAGGGT
ATATGATATCTAAGTAaccagaacacatcttttaaggagacaggggtaaA
AAACCAAGacaaaattgatgtaatcttgttgcctagtaaccctagagAGG
TTCAGAATACATCTGCCATGGGAAAAAAATCCAACGTCTTAAAGTTAtct
atagaaaaacaaaactttttgatttcagAACACGTTCAAACATAAAATAA
TGATAACCTTACGAAGACAAAacaaaggtttcctagaaatcagaacacat
cattagtATGTGTATCCTCGAAGAAAAACTACCCATTTTTCTTGAGAGTC
AAAGATATACATATATTAGCCTTTTTAACCATTTTCTTACATTTACACAT
TTCAGGTGATGACGAAATCCGAGAGATTGGTAATGCTGTTCCAAGTCCAT
TTAACCTTCCATTCTCTAAAGAAATCAAAGCAAAAGATGTTGTTATCAAA
GACCCACATGCTGTATCCCTCTCTGGATCATTAAGTGCATTAGCTCCAAC
TTACCCACCTGAAGTGGATCACGATGAAGgcaacaataaatttatttcta
aatttaaaattataagcCAAACTAAGAAGAGATCAAACTCAACAGTAACA
CGACCACCACATCTTCATCAAAAGGACTCAGACAAAATCGAACAAAAACG
ACTTCATCGTTTGAGAATCGCACGACGCAAACAACGACTTCACCGACTTA
ACAAACTTAGACATAATCGTAGAAAACGACCTCACCATAGAAGACCTCAT
AAGAAACCAACCAAAAAGCCAACTGAAAAACCGACTGAAAAACCAACCGA
AAAACCGACCGAAAAACCAACTACAAAGAAGCCACATAGAAAACGACCTC
ACCATAGAAGACCTCACCATAAAAGACCTCATAAGAAACCAACCAAAAAG
CCAACTGAAAAACCAACTGAAAAACCGACCGAAAAACCAACTACAAAGAA
ACCACATAGAAAACGACCTCACCACAAAAGACCTCATAAGAAACCGACCG
AAAAACCGACCGAAAAACCGACCGAAAAGCCGACTGAAAAACCGACGGAA
AAGCCACATGATCCTCACGACCACCACAAACCCGACAATCCAAACTTTTG
CCGTGATGCAGGTATGTTTATGCCATATTTTTCTGTTTAGATTAAAATTA
AGACGGGAATTCCACTTCCACTCAATTAAGAAAGTGTTTCTGTACTTCGA
ACTCAAACTACGCGGctttcgtttgtttgaAAAATCTTATAAATTATTCT
CAAATCCCCTTTTGACTTATGGAGAAAGTTCTCAATTCTTTGAAGATTGA
ATAAGAAGCGATGTATTTCAATGTTTTAATTGTGCCACGCTGCTTGTTCA
AAGTTTAAAGTGATACATCGACCATTTAACTGGCTAGTTAAATATTAGCT
TcttgttttcctttttcaatataattttttcATATCTTAAAAGGTATCTC
ATGTGATAGATCATGTACCGGATGTGAACCAGCTGGATTCTGTATCATGC
CCGAAAAAAACCACCACGCAATCAGATGCGTTTGTAACTTCGGATGGACT
GGTAAAAATGCAGTGTTCATGAAACCCTCAGCTGATTCGAAACTCAATAA
TATTATTATTGCTGACGACTGTAGTGTTGCATGTCAAAACACCAATGACC
GAAAAGGGTAAGTTCCTAATTGCATAAATTTCTGCTCATTTCTAACGAAA
AACTTTCTTACAGATTTATTAACTACTCATTCGCTCGATTCCACAATTTT
ACTATTCATTCTAAAATAATaatatcatatttttcaattttcagaacCAA
ATGCGCCAAAACGCAACACTGACAACACAAAAACAAATACTTGCAGCTTT
TGACTAGCCTGCAAAACTTGGGACATTTTATCATAGTATgattttataaa
gactttgtaaAAGTTCTcgtcttttcaatttttttatattctatATTTTT
TTACATACTGAATTGAAGCATATAATACTGTATATTCGTAACgacgcaaa
aaaataaaatatactcATCATCCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011535XLOC_011535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020545-exon-sc0000358-1491911889:31654..31774TCONS_00020545-exon-sc0000358-1491911889:31654..31774Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1510915933:31654..31774TCONS_00020545-exon-sc0000358-1510915933:31654..31774Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1575043694:31654..31774TCONS_00020545-exon-sc0000358-1575043694:31654..31774Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1491911889:31893..32088TCONS_00020545-exon-sc0000358-1491911889:31893..32088Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1510915933:31893..32088TCONS_00020545-exon-sc0000358-1510915933:31893..32088Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1575043694:31893..32088TCONS_00020545-exon-sc0000358-1575043694:31893..32088Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1491911889:32404..32505TCONS_00020545-exon-sc0000358-1491911889:32404..32505Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1510915933:32404..32505TCONS_00020545-exon-sc0000358-1510915933:32404..32505Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1575043694:32404..32505TCONS_00020545-exon-sc0000358-1575043694:32404..32505Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1491911889:33659..34414TCONS_00020545-exon-sc0000358-1491911889:33659..34414Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1510915933:33659..34414TCONS_00020545-exon-sc0000358-1510915933:33659..34414Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1575043694:33659..34414TCONS_00020545-exon-sc0000358-1575043694:33659..34414Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1491911889:34747..34960TCONS_00020545-exon-sc0000358-1491911889:34747..34960Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1510915933:34747..34960TCONS_00020545-exon-sc0000358-1510915933:34747..34960Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1575043694:34747..34960TCONS_00020545-exon-sc0000358-1575043694:34747..34960Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1491911889:35098..35330TCONS_00020545-exon-sc0000358-1491911889:35098..35330Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1510915933:35098..35330TCONS_00020545-exon-sc0000358-1510915933:35098..35330Clytia hemisphaericaexon
TCONS_00020545-exon-sc0000358-1575043694:35098..35330TCONS_00020545-exon-sc0000358-1575043694:35098..35330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:31654..35330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0286635	0.136892	0	0	0	0	0	0	0.0250409	0.0340018	0.391054	0.0767694	0.0249624	0.273916	0.154152	0	0	0.0726651	0	0	0.0853422	0.135202	0	0.0281463	0	0	0	0.0419419	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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