TCONS_00020458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020458
Unique NameTCONS_00020458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020458 ID=TCONS_00020458|Name=TCONS_00020458|organism=Clytia hemisphaerica|type=transcript|length=807bp
ATTTCGATTAACTAACATGATAGTCTTTATCCTGCTTGAATTTCAAAATC
CCAAAACACCAGTCAAACAGAGCTTTAATCGCTAATATTTCAATTTATCG
AATCGCTAAGGAAAGCTAAGGAAattattttctgacattttcacCGGAAG
AAAAACACGGGACAGGAAAAGATTAACACAGCCACTTGTTATTtatttgt
ttccattttaagaAGATAAAAGTATAAATATATTATGGGTAGTCCTTCAG
AGAGTGACAAAAAAACAGCAGAGTGTTACCACGTGGTTTATGAAACTTTG
CTGAATGGAATGGGTCAGAATTTTTCCCGAGCTACAGAATTCCAGATATT
AATTTCAGAATCCTGAATCATCCGCCAACTAAAAAGATCCCTCCCCTCAG
AGgtttgcatgaatgcgtgaattggaaaactttgcgCGAACAGAAATCgg
gtgaatttcgaaaaaaaaaggataaatgcgtaaatttcgaaaagaattca
cgcgattgcgtgaattgaagaaAACTACAATAATTAATTATGAATACCTT
CTAAAACCATTGAACCACACCAATACCTAAATCAAGGATATCACAAAAAG
GTCACGGAATGGTATGAAACGggacaagaaaagaaaaaaaagaaaaattc
ataaaacCCGTGCCAGCACGGTTTATCCACATAGCGGTTCCCACATCCAT
GTAAAATATCAAACTTCAGACATACTCTCAGtgtaaaaattttcataata
caATCATACTAAAATTCCAAAAGATTGACGAATAAGGGATCAAATGAAAG
AAATACC
Run BLAST on NCBI

transcript from alignment at sc0000356:285201..286007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020458 ID=TCONS_00020458|Name=TCONS_00020458|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0000356:285201..286007 (Clytia hemisphaerica)
GGTATTTCTTTCATTTGATCCCTTATTCGTCAATCTTTTGGAATTTTAGT
ATGATtgtattatgaaaatttttacaCTGAGAGTATGTCTGAAGTTTGAT
ATTTTACATGGATGTGGGAACCGCTATGTGGATAAACCGTGCTGGCACGG
gttttatgaatttttcttttttttcttttcttgtccCGTTTCATACCATT
CCGTGACCTTTTTGTGATATCCTTGATTTAGGTATTGGTGTGGTTCAATG
GTTTTAGAAGGTATTCATAATTAATTATTGTAGTTttcttcaattcacgc
aatcgcgtgaattcttttcgaaatttacgcatttatcctttttttttcga
aattcacccGATTTCTGTTCGcgcaaagttttccaattcacgcattcatg
caaacCTCTGAGGGGAGGGATCTTTTTAGTTGGCGGATGATTCAGGATTC
TGAAATTAATATCTGGAATTCTGTAGCTCGGGAAAAATTCTGACCCATTC
CATTCAGCAAAGTTTCATAAACCACGTGGTAACACTCTGCTGTTTTTTTG
TCACTCTCTGAAGGACTACCCATAATATATTTATACTTTTATCTtcttaa
aatggaaacaaataAATAACAAGTGGCTGTGTTAATCTTTTCCTGTCCCG
TGTTTTTCTTCCGgtgaaaatgtcagaaaataatTTCCTTAGCTTTCCTT
AGCGATTCGATAAATTGAAATATTAGCGATTAAAGCTCTGTTTGACTGGT
GTTTTGGGATTTTGAAATTCAAGCAGGATAAAGACTATCATGTTAGTTAA
TCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011501XLOC_011501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020458-exon-sc0000356-1491911889:285201..286007TCONS_00020458-exon-sc0000356-1491911889:285201..286007Clytia hemisphaericaexon
TCONS_00020458-exon-sc0000356-1510915933:285201..286007TCONS_00020458-exon-sc0000356-1510915933:285201..286007Clytia hemisphaericaexon
TCONS_00020458-exon-sc0000356-1575043694:285201..286007TCONS_00020458-exon-sc0000356-1575043694:285201..286007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:285201..286007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.40019	1.07477	1.37294	1.07111	1.09987	1.17659	0.841491	1.14584	0.157827	0.0409762	0	0	0	0.0912976	0	0	0	0.0839361	0	0	0.127394	0.170544	0.650796	0.0868184	0.0658487	0.0670894
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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