TCONS_00020269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020269
Unique NameTCONS_00020269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020269 ID=TCONS_00020269|Name=TCONS_00020269|organism=Clytia hemisphaerica|type=transcript|length=692bp
TCAACGCCCAAGTCTCATCCACAAAAGCCGCTGGCTTCCGTTCAAGCgct
caaaaatcaaagaaaggCTTTGTATCTTTCCAAGATTACGAGGATACGCC
TGTCAATCTCTCACTAACTCAGAAAGCTCAGAAAGATGACCTTTCTACCG
GACCCAAAAACGCCTTAGGATCAAACATGAAGGTCCATGCACCAGGACCT
GTAAACGCACGcctgatgaaaatgatcacaaACCCAAAACTAAGACAAAC
GTCAACTGAAAAAGAAATGTCAATCAAGAAAGCTCCATCCCTGACATCAG
CTAATCGTCCAAAAATCTCACGAGTCGTTTCACAGGAGCGAGTTTCATCT
CCAGTTCACTTAAACGCATTCGATGAAACAGACACAAAAACAGTTCCATC
ATTATTGAAAGTAACTCCTGTTCAAAAGCGATTTCCAATTGCCATGACAA
TGAAAGAAGCGATTCACAAAGCAGAGGAGGCGAGAAAGGAACGAAAACAA
AGAGAGAAAGAGGAAAATGAAGAATACTGCAAAGAGTTCGATAAAGATTG
GAATGACTTTTACTCCGTTGATGATAAACACGACAAAATCGAAAGTCCTT
CTTCAGGCTATACTGAATATGAATTTTAAactcatttaaaaaattttcta
ctAAAATACTTAAAAACTAATCGAAATATTTTAACTCCTAAC
Run BLAST on NCBI

protein sequence of TCONS_00020269-protein

>TCONS_00020269-protein ID=TCONS_00020269-protein|Name=TCONS_00020269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
NAQVSSTKAAGFRSSAQKSKKGFVSFQDYEDTPVNLSLTQKAQKDDLSTG
PKNALGSNMKVHAPGPVNARLMKMITNPKLRQTSTEKEMSIKKAPSLTSA
NRPKISRVVSQERVSSPVHLNAFDETDTKTVPSLLKVTPVQKRFPIAMTM
KEAIHKAEEARKERKQREKEENEEYCKEFDKDWNDFYSVDDKHDKIESPS
SGYTEYEF
Run BLAST on NCBI

transcript from alignment at sc0000350:338180..338871

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020269 ID=TCONS_00020269|Name=TCONS_00020269|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000350:338180..338871 (Clytia hemisphaerica)
GTTAGGAGTTAAAATATTTCGATTAGTTTTTAAGTATTTTagtagaaaat tttttaaatgagtTTAAAATTCATATTCAGTATAGCCTGAAGAAGGACTT TCGATTTTGTCGTGTTTATCATCAACGGAGTAAAAGTCATTCCAATCTTT ATCGAACTCTTTGCAGTATTCTTCATTTTCCTCTTTCTCTCTTTGTTTTC GTTCCTTTCTCGCCTCCTCTGCTTTGTGAATCGCTTCTTTCATTGTCATG GCAATTGGAAATCGCTTTTGAACAGGAGTTACTTTCAATAATGATGGAAC TGTTTTTGTGTCTGTTTCATCGAATGCGTTTAAGTGAACTGGAGATGAAA CTCGCTCCTGTGAAACGACTCGTGAGATTTTTGGACGATTAGCTGATGTC AGGGATGGAGCTTTCTTGATTGACATTTCTTTTTCAGTTGACGTTTGTCT TAGTTTTGGGTttgtgatcattttcatcaggCGTGCGTTTACAGGTCCTG GTGCATGGACCTTCATGTTTGATCCTAAGGCGTTTTTGGGTCCGGTAGAA AGGTCATCTTTCTGAGCTTTCTGAGTTAGTGAGAGATTGACAGGCGTATC CTCGTAATCTTGGAAAGATACAAAGcctttctttgatttttgagcGCTTG AACGGAAGCCAGCGGCTTTTGTGGATGAGACTTGGGCGTTGA

Coding sequence (CDS) from alignment at sc0000350:338180..338871

>TCONS_00020269 ID=TCONS_00020269|Name=TCONS_00020269|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000350:338180..338871 (Clytia hemisphaerica)
TTAAAATTCATATTCAGTATAGCCTGAAGAAGGACTTTCGATTTTGTCGT
GTTTATCATCAACGGAGTAAAAGTCATTCCAATCTTTATCGAACTCTTTG
CAGTATTCTTCATTTTCCTCTTTCTCTCTTTGTTTTCGTTCCTTTCTCGC
CTCCTCTGCTTTGTGAATCGCTTCTTTCATTGTCATGGCAATTGGAAATC
GCTTTTGAACAGGAGTTACTTTCAATAATGATGGAACTGTTTTTGTGTCT
GTTTCATCGAATGCGTTTAAGTGAACTGGAGATGAAACTCGCTCCTGTGA
AACGACTCGTGAGATTTTTGGACGATTAGCTGATGTCAGGGATGGAGCTT
TCTTGATTGACATTTCTTTTTCAGTTGACGTTTGTCTTAGTTTTGGGTtt
gtgatcattttcatcaggCGTGCGTTTACAGGTCCTGGTGCATGGACCTT
CATGTTTGATCCTAAGGCGTTTTTGGGTCCGGTAGAAAGGTCATCTTTCT
GAGCTTTCTGAGTTAGTGAGAGATTGACAGGCGTATCCTCGTAATCTTGG
AAAGATACAAAGcctttctttgatttttgagcGCTTGAACGGAAGCCAGC
GGCTTTTGTGGATGAGACTTGGGCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011373XLOC_011373Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020269-proteinTCONS_00020269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020269-exon-sc0000350-1491911889:338180..338871TCONS_00020269-exon-sc0000350-1491911889:338180..338871Clytia hemisphaericaexon
TCONS_00020269-exon-sc0000350-1510915933:338180..338871TCONS_00020269-exon-sc0000350-1510915933:338180..338871Clytia hemisphaericaexon
TCONS_00020269-exon-sc0000350-1575043694:338180..338871TCONS_00020269-exon-sc0000350-1575043694:338180..338871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:338180..338871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326588 0 1.28525 1.04861 0.572199 0.196911 0 0 0 0.0864152 0 0.127704 0 0 0 0.159409 0.0551408 0.113035 0.078082 0.163414 0.0710184 0 0 0 0 0.140767 0.100718 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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