TCONS_00020240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020240
Unique NameTCONS_00020240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020240 ID=TCONS_00020240|Name=TCONS_00020240|organism=Clytia hemisphaerica|type=transcript|length=398bp
AAAAGCTAAAATAAATATCAGGGAGATAAAAGTAACTCAAAAAAATGATT
GAGTTATTTTCGGTTTTTACCTCCCtagtatattaaaaaatatatctaCG
AATGTGAGATATCGAAAGTCActtggaaaaaaacaaaatggacgTTTTAG
CAGCGTATGGCTCTGAATCTGACTCAGGCGATGAGCAACAAAATACAACA
GAACCAAGCAAGAACGAAGAAGATCATGCTCATCTTTCCAGTGAGGTTTC
AATGAAAGATCTTAAATCAAAACACCAACTTCAAATTGCACCTTTTGTGG
AAACCAAAAAGCTACAACCTCTATCTTTGTTAAATCGTCTCTACGTATGT
TTAcacgggtaaacaaagaagatttattacagaaaatgctgccgccct
Run BLAST on NCBI

transcript from alignment at sc0000350:325560..326263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020240 ID=TCONS_00020240|Name=TCONS_00020240|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at sc0000350:325560..326263- (Clytia hemisphaerica)
AAAAGCTAAAATAAATATCAGGGAGATAAAAGTAACTCAAAAAAATGATT
GAGTTATTTTCGGTTTTTACCTCCCTAGTATATTAAAAAATATATCTACG
AATGTGAGATATCGAAAGTCACTTGGAAAAAAACAAAATGGACGTTTTAG
CAGCGTATGGCTCTGAATCTGACTCAGGCGATGAGCAACAAAATACAACA
GAACCAAGCAAGAACGAAGAAGATCATGCTCATCTTTCCAGTGAGGTTTC
AATGAAAGATCTTAAATCAAAACACCAACTTCAAATTGCACCTTTTGTGG
AAACCAAAAAGGTAAGTCACAATATCACAAAAAACTTTTTCCCGCTCACA
ATGTCAATGGCAATGCAATGGAATGGGCTATTCTGTTTATTAACCATAAA
GTACAGGGGTATTGACGAATTTTTCCAGGGGATCTGAGTCTTTGATTTTC
CAAGGGGTTTTGGTTCATTTTTCAGATTTTCTAAAGGGGTTATTAGGCCG
ATGAAATTTATATATGTGTTTACCGTCGGCCGCCCGCATCTCTAAAAAGC
ACCCGCATGAAAATTTCATTATTTTCAAATTTCATAAATTTTTCATTATT
TCCATATTTCTTTACAGCTACAACCTCTATCTTTGTTAAATCGTCTCTAC
GTATGTTTACACGGGTAAACAAAGAAGATTTATTACAGAAAATGCTGCCG
CCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011354XLOC_011354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020240-exon-sc0000350-1575043694:325953..326263TCONS_00020240-exon-sc0000350-1575043694:325953..326263Clytia hemisphaericaexon
TCONS_00020240-exon-sc0000350-1575043694:325560..325646TCONS_00020240-exon-sc0000350-1575043694:325560..325646Clytia hemisphaericaexon
TCONS_00020240-exon-sc0000350-1510915933:325953..326263TCONS_00020240-exon-sc0000350-1510915933:325953..326263Clytia hemisphaericaexon
TCONS_00020240-exon-sc0000350-1510915933:325560..325646TCONS_00020240-exon-sc0000350-1510915933:325560..325646Clytia hemisphaericaexon
TCONS_00020240-exon-sc0000350-1491911889:325953..326263TCONS_00020240-exon-sc0000350-1491911889:325953..326263Clytia hemisphaericaexon
TCONS_00020240-exon-sc0000350-1491911889:325560..325646TCONS_00020240-exon-sc0000350-1491911889:325560..325646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:325560..326263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.58645	2.40195	0.32417	0.548697	0.325513	0.307669	3.99086	5.3213	3.52948	5.65013	1.15456	2.47617	1.78138	4.32988	6.27835	2.22801	2.44186	3.16317	6.40331	3.22067	3.88576	3.26738	0	0	3.99813	2.08407	2.93898	5.28142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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