TCONS_00020222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020222
Unique NameTCONS_00020222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020222 ID=TCONS_00020222|Name=TCONS_00020222|organism=Clytia hemisphaerica|type=transcript|length=3935bp
ACCGTTTTAGTTGGATTCAAGGATTGTTTgtcacttttttgtttttatcc
aaCGACTCACAAAAGTATGCTTTATTTTATATGATCGCACACCTCAGGGA
TTCAGGTGTGTGCGGAGGCGTGCGTGTGTCACATCTCAAATGATTCTGCC
TGAGTTCTCAATAAAATCCCAAATCATATGAGCTTGTCTCTAAACAAAAT
AGATTTGCTCTGATCAAAGCAGTTTTTCTGTAAATGCCATTAGTATTTTG
TAGTCCCTACACTGTGATTCTTTAAGTATTTTAAtgttcctttttctttc
tctaaaGAACCATGAAAAATGTCAGAGCGGAGGTCACTGAGAGCACGTTT
CCGTGTGTGTTGTGTGAGAGAATGTGATAATGGAGATAAGGAATTAACAA
AGTGGAAAGAAGAACCTTGCCTTATCCATCAAAAAGTTCATCGCAGTTGC
AAATGTGACCCTCCTTTTGAATTATTCACATTTCCAACCATTCGTGGGAA
TCCCAAACAACGAAGAAAATGGGTCAGACTACTAAATAGAGCAGACACAA
GAAAAGGAGAACCATGGGCACCAGGTCCTCTAGGAAGAGTTTGTTCTCTG
CATTTTGTCGATTCGCAACCAACAGAATCAAATCCTTTGCCAACATTGGA
TCTAGGATATGACAGTGCACCAATACAGAAAGAAATCGAGATGGAGTTGA
AAGTCAAAGAAGAAGCAACAGATGAAGAACTCGATTCTGAAGAAGATGTA
AAGCCagaagaaaataatgatttGGCTGAGAAAGACAAAAGCTTAGCTGA
GCCAGAAAGAGAGGTGGTTGTGCTAGATATTGATAAAACACCAGAGGAAG
GAAAACGACTGCAGGATAAGGATGGTGAAGAATCAGGAGATGTTGTTGGG
CCAAATGTCAGCGAAAAAGAGNGCCAGAGGAAGGAAAAAGACTGCAGGAT
AAGGATGGTGAAGAATCAGGAGATGTTGCTGGGCCAAATGTCGGGGAAAA
AGAGTCGGAGGATGCAGAAATTTTAGAGGAAGATTTCCTCATGAAAGCAA
TTGGTGGTACATttcaagACTCAATAGACGAAGAGGATGGtattgactgc
attgatattgATTTTGATGACGGTGATGGTGATGCATTTATTCATCAAGA
ACCAGAGCTGGCGATGGAAAGTGAGGAAGCGTCACCGGCTGCTGATATAC
CGCAAGAACACGCTTCTCCTGAAAAAGCTGCACTGCACACTGCTGCaagt
gaagatgaagaagaagaaaattttggaTTAAAAGACATCAAAATTGAAGT
CATTGACCCTTCCTATGCTCACTTCTCTGGAACAGACACAATTGACCAAT
CACAAACGGAATCCAACGATGACTCATCTAATTTACTTGGTAGTAAGTTT
GaggaaatttccaaaaaatgttcacGCTCTCTCAACAAACCTTGTCATTG
TGAAAACTGTCAAGTTCTGATGGACACTTATAAAGAATTTGTGCAAAACC
GACTGAAAGAATCAAAATCACCAGAGCCAGGACCTGCAAGCTCAAAGAAG
ATTCGATTAGCAGAATCACCAGGAGCACTCATCAGAAATTGTCAGAAGTG
TGGCATCGATTTCCCTTCATATGAACTCTACAAGGAACATGTTAGGACCG
AACATCCTATTTACTGGAAACACATTCAGTTAGAATctgattttaaagaa
aaaagaaaacttattgTCATGGAAGCCAAGAAAGAACCCCAACcgtccaa
aacaaactttttcaaaaaacaattagCACGTCAAAGTCAAGTACCCATCC
AATCCAAAGTCAAAGTCAAAGCTGCCAAACCTCTTGTACCGCCTTCTATG
CCTACCATGGTACCAACTATGGTCCCTCCACCTGGTATGGTAGCTCCCAC
CATGCTCCCTCATGGAATGATGCCTCAAGCAGGTATGGTACCCCAACAAG
GCATGGCACAACCAGGTATGGTCCCTCAGCCAGGAATGGTTCCTCCAGGA
ATGATGGTTCCAGGGCCTCCTGTTGCTACAAGTGAAAAGGACGGCGCTAA
CCCTGTCACATACTTCTACCCCATGCTTTACCCAGTGTACTTTGTTATGG
ACAAGGAcggaaagaaaaagagaaaaggtCAACCTGTTCCTGTACCAATG
GCTATGCCTCAAATGCCACAAGGGATGCCACCTGGCCCTATGATGGTTCC
ACCACAATTTGTGAATATTGCACCCAAAAAGCGAAAGAAGCCAGAGAAGG
TGGCGTGTGGGGAATGCGGCTTAACGTTTCAATTTAAAGAGGAATTGATG
CTTCATATGAGGATCCATTCAGATAAACCCTACAAATGTGAAACGTGTCA
ATTATCTTTCGTGAACAATGTAGAATTGAAAAGACACTATCGCACGCATT
CTTCCTTCAGTTGTATTCAGTGCAACGAATCTTTCACCACTCATAGTCAT
TTACAAGAACACGAGAAATCGAAACATGGTGCTGAGCCATTACTTCCAGA
CAGTAAGAGTAAGCCAATGACTTGCAACACGTGCAAGATGTCTTTCTCGA
ATAATGTTGAATTGAAACGACATTATCGAACTCACGCTTTCTTCAAGTGT
AAATTTTGTAGTGAATCGTTTGTGTCTTGGGAACAGCTCGTTCAACACTC
TGCTAACGTTCATTCGAAAGAAGAGACACCTTCGACACCTTCGACACCTT
TGAACCAATCAGATGAGACGATCGATGAGAAACAAAGTAATGACACCAGC
GAAGACAGTGAGAACGTTGTCGGCGAAGAAGACTTCACTTGCTACCATTG
TAGTAAATCCTTCCCAACCATGGATATCTTACAAAAACATTTGAAGGTAC
ATTCCATTAAACAGGAACCTGCCGACGAGCCAGGTCCTTCATCCTCTCTT
CCAGAAGGGGCCAACCAGGTGGTGATCATACCTCCTCCTTCACAAGTCGT
CTTTATGAACCCAACAGGTCATCTACCACCAGGAATCACTCAACCTGGTA
TACCTTCGGCTGGTATGATGCCCCCTGTTGTTAATCAACCTCCGACTATG
GAGGCAGTAACTTCTTTTGCAACAGACATTAAAAAGGAACCATTAGATTA
TGACGAAATTGACGAACAACTGGAGGAGCCGGATGAAAGCGcaaccaaaa
acaaacattACGCTTGTAACCAATGCGGCGCCATGTTTAGCCGCATGTTC
AGCCTAAACCGCCACAAGCGCATCCACACTGGTGAGAGAGGGTACAAGTG
TGAAATATGTGGCGCCTGTTTCAGAACGCAATCGCAACGTAAAACGCATT
CATTCACACACACCGGTGAACGACCCTTCAAATGTCATTTATGTCCGGCA
ACTTTCATCCAACAAGGGAATTTGAAACGTCACATTTGGACGCACACTGG
TGAAAAACCTCATGTTTGTAATATGTGTAATGCTGGTTTCCTCAGCACTT
CAGACCTCAAGAGACATATCCGGACACATACCGGTGAAAAACCGTATAAA
TGCGGACATTGCAATTGTTCTTTTACGACGTCAGGAAACTTGAAATCTCA
CATGAAAACGCATGTTAATTCTGGTCATCCTGGTATTGTCGCCATGTAAT
tatcctttttttaatttttggtctTTGGACCTTTGTCTTATTTTAATTAG
TATCTCTAACGGTATTTTTATACATAGCTCAGGAGTGAttattttaaaca
tatttttagTTCTTTTGTATTGTATGAAACGTAATTTTTATACTATATGC
ACTTATTTTTCTGTTGgggattgatttttttttattttcttactaTACTA
ATTTTTAGTAACTTTTGGAGGTTAATTTTTGGTTAAAGTTTTAAGGGTTA
TTTATGATCACAGCTAGCAAAACTGAAATTTGCATGGTTATAAAACCATT
GTGTTGGTTGTACTGTTTCGTCAGTCAAAATATAA
Run BLAST on NCBI

transcript from alignment at sc0000350:233699..244598-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020222 ID=TCONS_00020222|Name=TCONS_00020222|organism=Clytia hemisphaerica|type=transcript|length=10900bp|location=Sequence derived from alignment at sc0000350:233699..244598- (Clytia hemisphaerica)
ACCGTTTTAGTTGGATTCAAGGATTGTTTGTCACTTTTTTGTTTTTATCC
AACGACTCACAAAAGTATGCTTTATTTTATATGATCGCACACCTCAGGGA
TTCAGGTGTGTGCGGAGGCGTGCGTGTGTCACATCTCAAATGATTCTGCC
TGAGTTCTCAATAAAATCCCAAATCATATGAGCTTGTCTCTAAACAAAAT
AGATTTGCTCTGATCAAAGCAGTTTTTCTGTAAATGCCATTAGTATTTTG
TAGTCCCTACACTGTGATTCTTTAAGTATTTTAATGTTCCTTTTTCTTTC
TCTAAAGAACCATGAAAAATGTCAGAGCGGAGGTCACTGAGAGCACGTTT
CCGTGTGTGTTGTGTGAGAGAATGTGATAATGGAGATAAGGAATTAACAA
AGTGGAAAGAAGAACCTTGCCTTATCCATCAAAAAGTTCATCGCAGTTGC
AAATGTGACCCTCCTTTTGAGTAAGTAATTTATTATCTGTTAGTTCAAGT
AATCTTGCATTCAATCAATACCATCTTCTTGAGGGCTGATTTGAAACTAG
AAAATGATTAATGTGACTGATATAGAAATTTGAACAAATTTTGATACAAA
TGTGAAGACTTTATAAACCTTTTTCAGTTGATTTTTGAAAAGGAGGCTCG
CAATAGTCCTATGCATTTTAATAAAGAGTGTTTGTACACCTACATGATCA
ACCCAATCAAACTCAATATGTCTGGAGATTTTGGAAACTGATGATATGTT
AAAATGTTTCACTTTTTTTGTTTTCTTAGAGCTTTAAGAAATCATTTGTG
ATTGATTGTTCTAAAAATTTCTCCATACTATAGATTATTCACATTTCCAA
CCATTCGTGGGAATCCCAAACAACGAAGAAAATGGGTCAGACTACTAAAT
AGAGCAGACACAAGAAAAGGAGAACCATGGGCACCAGGTCCTCTAGGAAG
AGTTTGTTCTCTGCATTTTGTCGATTCGCAACCAACAGAATCAAATCCTT
TGCCAACATTGGATCTAGGATATGACAGTGCACCAATACAGGTCCGTAAT
TGTTCTCCAGTTTTGGTAATGTCTACTAAAATATGGCTTTCCTTTTTAAC
TTTCCAAAATTAATGAAATTTTTCTAGAAATTAGAATTGCAGACCTATTA
TTTAGACCTTTTTATGTGAAGACTTTAATTTTTTTTTCCCCTTGTTTAGA
CGATAACCATGAATCTCATTGTAACTTTTTCAGTTAATGATCATGAACTG
AGACTTGCCTAGGTTGATAAAAGGGATTTTTTGCGTCAAAAATAAAAAAT
ATAACTTTTTGAATGATTTTTTTGAAGCCTCTGTACGAGATTCACTGAAA
AATGACGAAAATCATGGAATCTTGGATATATTCAACTCAAATGAATTGTT
TGGAATAAATACTAGGTTTTTTTTGGAAATATTGATAAAATATTTGTAAA
AAATTTATTTCCAAGCTGTAAAACCGGTTTTCCAGCTTGAAAACAGGCCT
AAAACACATACTTTTTTATCGGAATTTTTGATCCTTTTTTTCTCTTTCAT
GCTTATAGATCACATGGGTTTTTTTTCACTTTCTGAAAATACAATTTTTG
GTTTTGCCCAAAATTAGTCGCAACTCTGAAAAATTTGAGCCGGATTTGCT
ACTTTTTGAGTTTGGAGCTGCCTTTCAGGGCTGCTAGAGCCCAGTCTACT
TAAAAAAAAAATTCAAAATTGCTTAAATCTGCTGTCATAAAGTTGCTCAA
CACATCTCCACAAAGAAATTTGGCCCAAAAAAGTCCTGGGCTGAGTAATG
GCACCTTAAAAGATGGCTGAAATGGATTTTGGAGTGTTTTTAAGCCGCCA
TTATGGAATTTGCGTTTAAGGTCACATGGGTTTTTTTGTTTTTTTTGGAA
TCACAAATTGGTTACTTCAATAAAATTAATAAAAACCCATGTGATCTTAG
TTGCAACTTGAAAAAATGCCTCTTAAAGTTGTAACAAAAAAAACGGCGAA
AAAATTTTGGATTGGCTGTAAATCCGCCATTATGGATTTTGGGGACCTGA
AATTTTGGGATTCTGAGTTTTTCACTATTGTCTACCAAATATCCAAAAAT
GAAGGAATTTAAATTTTTCTACTATCAAAATTATCCAAAACTGCCTGGTT
CTTACAGAAAATGGCTCTTTAACAAGGCAACTATTTCATTTAACTTTTCA
GAAAGAAATCGAGATGGAGTTGAAAGTCAAAGAAGAAGCAACAGATGAAG
AACTCGGTTTGTCAATTTTTGCAAGCAGGGCTTTTTTAAAGTCTGCCTAC
TACAAATGTACAATACTTTCAGTACAGTTCCCCCGATCATACATAAAGCT
TTAGCTTACTAATTACTGTACCTTTCATATTCTGCTTTGATTGATTTGCA
ATTTTATAGACATTTGAAGCGAAACTCATAAAGGCTGCAAGAGTCTCTAA
AAAGAGGTCGTTGTAAAACATGGATTAGCTCCATGGAGTACTCCGATGGA
GTACCTAATGGAGTACCCCCAAAAATACATATATCAGAGCGATGAATATC
ACAAATTTGATAATCAACCTTTTCCACCAGCTGTAAACTGCCAATCTATA
GCAATCAAAAGAATTTCCAAAGTATTTGTTTGTGAAAAATGGCTACCATT
TCTGGCAGTAAAGCTCATATAGTGCATGCTCTCTGCTTAAAAATCTTTGT
TGATTCTACAATTAAACAGACCAGATTTAGCTTACAGAATAGCAGTTGGG
GACAGTCTGTGAGAGAGGTTACAGAGGGGTTTTAGAGCATTAATTATTCA
TTGTAATTTTATTGACAAAATACACTTCAATTAGCGAGGTTAAGCAAGAA
GCTATCTATTACGTACGGAATCTATTACGTGAGTTTTTCGCAGGCTAGCG
CCCAAATCTCAAGGCTAACTCTGTCCCGTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGT
GGAAACTATGATGCATACAAACAAAGTGAAAGAATTTATTGCTCAAAAGA
AGGTCAAGATGTAAGTGTAATTAAATAACCTTTGCTGACGTTTTTATCAA
ACCAAAACAAACAGAAAGTTTCTTTCTGGATCTTTTTGTCTGTTTGTTTT
TCGTCTGTTTTTTATTTTATTTTTTTATGCTCTCAAAGTCCAAATACTTC
CAAAATGACCTTTACAATTAACAGCATGTAACCATATTTCTTTTTCATGT
TTTTTAGTGTTTCTGTGGTGCCACCATCAAGTGCGAAGAAGCCAAAGTTA
TAATGTCACCCACCCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAATTCTTTATTTATTGTTCCAATTT
CAACTGCTACAACTAAGCAACGAGATTCAATTTCTGCTCTCCATCATCAA
CCATATATTGTACGTACAAATCAGCCTCTGCTGAGTAAGAACCTGATGTC
ACACAACCGCTGAACTTCAAACCGTTCTCAAAAATTATATAAAGCTCTAT
CTTCTGGACAACCGCTACTGCTTTAAGTTCTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAATAAAATTTTATAAGTTGGGGCCGAAAGTGAGATACGGAAAAATA
AACATTACGTCATACGTCATAGATCGCCTTTTTGCTTAACCACTTTTTTT
TCTATGCCGTTAAGATTTAGGAATCAGGCTAAAACGCCTCGGATCCAGTC
TAAAAACTCACGTAATAGATTCCGTACGTAATAGATAGCTTCTTGCTTAA
CCTCGCTATTAACAAAATAATAAGACAATCACAATAAATGGAGTCTGCCA
ACTTATTTCTTTGATATAAGAATTTCATACTCAATGGGATGCAGATGGCA
TGAAAGTATATAAAAAGAGACCATTCAGAAAGCAACATTTTTGCTACAGA
GTGGTTTTAGAGCAAATACAAAATTATACAGGTCTTTATTTTCCTCTCGT
GGCTATCTGAAATCTGATCTGCAATATTTTTAGAGTACTCCAATAGGTAC
TCCATTGGAGTACTCCATGGAGCTAATCCATGTTTTACAACAACCCCTAA
AAAAGTCGAACTCTAAATTCAATTCCAATGAGCTAACGTTTTTTGGACCT
ACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCGTGTTCGTTAGTTAGT
TAGTTACCAACTTTTCTCGAGATTGGCTCATTCAATATTTCTGATTTTTT
GCACAAAGGTGCATTACTATGAACCCTCGAATGTGACGGAGCCCGATTTT
CGAAAAAAAAATTTTCCGGCCGGTAGAACCGGAAATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTTCTAAAA
AAGGGATGTCAGTGAACATGAAAATATTGAAATCTTTTCATTCATAACAG
ATTCTGAAGAAGATGTAAAGCCAGAAGAAAATAATGATTTGGCTGAGAAA
GACAAAAGCTTAGCTGAGCCAGAAAGAGAGGTGGTTGTGCTAGATATTGA
TAAAACACCAGAGGAAGGAAAACGACTGCAGGATAAGGATGGTGAAGAAT
CAGGAGATGTTGTTGGGCCAAATGTCAGCGAAAAAGAGNGCCAGAGGAAG
GAAAAAGACTGCAGGATAAGGATGGTGAAGAATCAGGAGATGTTGCTGGG
CCAAATGTCGGGGAAAAAGAGTCGGAGGATGCAGAAATTTTAGAGGAAGA
TTTCCTCATGAAAGCAATTGGTGGTACATTTCAAGGTAAAAAAAATTAGA
AAGGATGGATGGAATCCATGTGAAGACATGCAAAAAGAAAATGTTTTAAT
AATTTCTATGTTTTCTACATTGTGATTCCTATGGCAATTTCAGTTATTTT
ATCATATAACTTTTTACATGATTCAGATTCGTAATAACTTCGTTTTTTAG
CATACATACATCTATAGTTATAGAATCTGTTGGCTTTAGATGTATATTAA
CTAACTCACAACTTTTCATTGTTTTCCAGAAGACTCAATAGACGAAGAGG
ATGGTATTGACTGCATTGATATTGATTTTGATGACGGTGATGGTGATGCA
TTTATTCATCAAGAACCAGAGCTGGCGATGGAAAGTGAGGAAGCGTCACC
GGCTGCTGATATACCGCAAGAACACGCTTCTCCTGAAAAAGCTGCACTGC
ACACTGCTGCAAGTGAAGATGAAGAAGAAGAAAATTTTGGATTAAAAGGT
TTGTAATGTTGTTTTGTTAATTTCTCTCAATTGAATCTAAGTCTAAACCA
GTAGCTAAGAAATTGCTACTGGACAGGATTCTTTTTTGAACCTCTGGACA
CGGATCCAAAATTACCATACTTAAAGAATAAGTTTTTAGAAAGTGGAGAA
CAGACTAGAGACATATATAAGATTCCTGTACCATACATACCACCTTTTAA
CTTTTTTTATTACCAGAAAAAAAAACAGATACTTTGAACTCAAGGGGTTG
AAAATAGATGGTATTGACCTGAACCTGAAATCTTTCAAATCTTAGGGAAG
TAAGCTCCTTAACGCCAAATCATGATAATTTGCTGTCTACATAACAATTG
ATAATCGAAGCTTGAATATAACTTNTAACGCCAAATCATGATAGTTTGCT
GTCTACATAACAATTGATAATCAAAGCTTGAATATAACTTTTATCGTAGA
CATCAAAATTGAAGTCATTGACCCTTCCTATGCTCACTTCTCTGGAACAG
ACACAATTGACCAATCACAAACGGAATCCAACGATGACTCATCTAATTTA
CTTGGTAGTAAGTTTGAGGAAATTTCCAAAAAATGTTCACGCTCTCTCAA
CAAACCTTGTCATTGTGAAAACTGTCAAGTTCTGATGGACACTTATAAAG
AATTTGTGCAAAACCGACTGAAAGAATCAAAATCACCAGAGCCAGGACCT
GCAAGCTCAAAGAAGATTCGATTAGCAGAATCACCAGGAGCACTCATCAG
AAATTGTCAGAAGTGTGGCATCGATTTCCCTTCATATGAACTCTACAAGG
AACATGTTAGGACCGAACATCCTATTTACTGGAAACACATTCAGTTAGAA
TCTGATTTTAAAGAAAAAAGAAAACTTATTGTCATGGAAGCCAAGAAAGA
ACCCCAACCGTCCAAAACAAACTTTTTCAAAAAACAATTAGCACGTCAAA
GTCAAGTACCCATCCAATCCAAAGTCAAAGTCAAAGCTGCCAAACCTCTT
GTACCGCCTTCTATGCCTACCATGGTACCAACTATGGTCCCTCCACCTGG
TATGGTAGCTCCCACCATGCTCCCTCATGGAATGATGCCTCAAGCAGGTA
TGGTACCCCAACAAGGCATGGCACAACCAGGTATGGTCCCTCAGCCAGGA
ATGGTTCCTCCAGGAATGATGGTTCCAGGGCCTCCTGTTGCTACAAGTGA
AAAGGACGGCGCTAACCCTGTCACATACTTCTACCCCATGCTTTACCCAG
TGTACTTTGTTATGGACAAGGACGGAAAGAAAAAGAGAAAAGGTCAACCT
GTTCCTGTACCAATGGCTATGCCTCAAATGCCACAAGGGATGCCACCTGG
CCCTATGATGGTTCCACCACAATTTGTGAATATTGCACCCAAAAAGCGAA
AGAAGCCAGAGAAGGTGGCGTGTGGGGAATGCGGCTTAACGTTTCAATTT
AAAGAGGAATTGATGCTTCATATGAGGATCCATTCAGATAAACCCTACAA
ATGTGAAACGTGTCAATTATCTTTCGTGAACAATGTAGAATTGAAAAGAC
ACTATCGCACGCATTCTTCCTTCAGTTGTATTCAGTGCAACGAATCTTTC
ACCACTCATAGTCATTTACAAGAACACGAGAAATCGAAACATGGTGCTGA
GCCATTACTTCCAGACAGTAAGAGTAAGCCAATGACTTGCAACACGTGCA
AGATGTCTTTCTCGAATAATGTTGAATTGAAACGACATTATCGAACTCAC
GCTTTCTTCAAGTGTAAATTTTGTAGTGAATCGTTTGTGTCTTGGGAACA
GCTCGTTCAACACTCTGCTAACGTTCATTCGAAAGAAGAGACACCTTCGA
CACCTTCGACACCTTTGAACCAATCAGATGAGACGATCGATGAGAAACAA
AGTAATGACACCAGCGAAGACAGTGAGAACGTTGTCGGCGAAGAAGACTT
CACTTGCTACCATTGTAGTAAATCCTTCCCAACCATGGATATCTTACAAA
AACATTTGAAGGTACATTCCATTAAACAGGAACCTGCCGACGAGCCAGGT
CCTTCATCCTCTCTTCCAGAAGGGGCCAACCAGGTGGTGATCATACCTCC
TCCTTCACAAGTCGTCTTTATGAACCCAACAGGTCATCTACCACCAGGAA
TCACTCAACCTGGTATACCTTCGGCTGGTATGATGCCCCCTGTTGTTAAT
CAACCTCCGACTATGGAGGCAGTAACTTCTTTTGCAACAGACATTAAAAA
GGAACCATTAGATTATGACGAAATTGACGAACAACTGGAGGAGCCGGATG
AAAGCGCAACCAAAAACAAACATTACGCTTGTAACCAATGCGGCGCCATG
TTTAGCCGCATGTTCAGCCTAAACCGCCACAAGCGCATCCACACTGGTGA
GAGAGGGTACAAGTGTGAAATATGTGGCGCCTGTTTCAGAACGCAATCGC
AACGTAAAACGCATTCATTCACACACACCGGTGAACGACCCTTCAAATGT
CATTTATGTCCGGCAACTTTCATCCAACAAGGGAATTTGAAACGTCACAT
TTGGACGCACACTGGTGAAAAACCTCATGTTTGTAATATGTGTAATGCTG
GTTTCCTCAGCACTTCAGACCTCAAGAGACATATCCGGACACATACCGGT
GAAAAACCGTATAAATGCGGACATTGCAATTGTTCTTTTACGACGTCAGG
AAACTTGAAATCTCACATGAAAACGCATGTTAATTCTGGTCATCCTGGTA
TTGTCGCCATGTAATTATCCTTTTTTTAATTTTTGGTCTTTGGACCTTTG
TCTTATTTTAATTAGTATCTCTAACGGTATTTTTATACATAGCTCAGGAG
TGATTATTTTAAACATATTTTTAGTTCTTTTGTATTGTATGAAACGTAAT
TTTTATACTATATGCACTTATTTTTCTGTTGGGGATTGATTTTTTTTTAT
TTTCTTACTATACTAATTTTTAGTAACTTTTGGAGGTTAATTTTTGGTTA
AAGTTTTAAGGGTTATTTATGATCACAGCTAGCAAAACTGAAATTTGCAT
GGTTATAAAACCATTGTGTTGGTTGTACTGTTTCGTCAGTCAAAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011352XLOC_011352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020222-exon-sc0000350-1575043694:244129..244598TCONS_00020222-exon-sc0000350-1575043694:244129..244598Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1575043694:243558..243765TCONS_00020222-exon-sc0000350-1575043694:243558..243765Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1575043694:242343..242397TCONS_00020222-exon-sc0000350-1575043694:242343..242397Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1575043694:237264..237598TCONS_00020222-exon-sc0000350-1575043694:237264..237598Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1575043694:236801..237016TCONS_00020222-exon-sc0000350-1575043694:236801..237016Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1575043694:233699..236349TCONS_00020222-exon-sc0000350-1575043694:233699..236349Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1510915933:244129..244598TCONS_00020222-exon-sc0000350-1510915933:244129..244598Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1510915933:243558..243765TCONS_00020222-exon-sc0000350-1510915933:243558..243765Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1510915933:242343..242397TCONS_00020222-exon-sc0000350-1510915933:242343..242397Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1510915933:237264..237598TCONS_00020222-exon-sc0000350-1510915933:237264..237598Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1510915933:236801..237016TCONS_00020222-exon-sc0000350-1510915933:236801..237016Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1510915933:233699..236349TCONS_00020222-exon-sc0000350-1510915933:233699..236349Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1491911889:244129..244598TCONS_00020222-exon-sc0000350-1491911889:244129..244598Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1491911889:243558..243765TCONS_00020222-exon-sc0000350-1491911889:243558..243765Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1491911889:242343..242397TCONS_00020222-exon-sc0000350-1491911889:242343..242397Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1491911889:237264..237598TCONS_00020222-exon-sc0000350-1491911889:237264..237598Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1491911889:236801..237016TCONS_00020222-exon-sc0000350-1491911889:236801..237016Clytia hemisphaericaexon
TCONS_00020222-exon-sc0000350-1491911889:233699..236349TCONS_00020222-exon-sc0000350-1491911889:233699..236349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:233699..244598 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0285315	0.0295172	1.50254	0.50073	19.0823	10.6866	3.65617	6.67315	2.24908	4.11141	1.16464	1.84187	0.735288	3.24598	1.01833	2.30374	1.94667	2.58951	0.623565	1.19264e-08	1.89814	1.4336	1.72926	2.21125	2.69748	0.898598	1.51324	1.47824	0.877599	2.4357
Blast
[Close]
BLAST of TCONS_00020222 vs. Swiss-Prot (Human)
Match: ZN665 (Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.642e-47
Identity = 141/472 (29.87%), Postives = 199/472 (42.16%), Query Frame = 3 
Query: 2214 NIAPKKR----KKPEKVACGECGLTFQFKEELMLHMRIHS-DKPYKCETCQLSFVNNVELKRHYRTHSS---FSCIQCNESFTTHSHLQEHEKSKHGAEPLLPDSKSKPMTCNTCKMSFSNNVELKRHYRTHAF---FKCKFCSESFVSWEQLVQHSANVHSKEETPSTPSTPLNQSDETIDEKQSNDTSEDSENVVGEEDFTCYHCSKSFPTMDILQKHLKVHSIKQEPADEPGPSSSLPEGANXXXXXXXXXXXXFMNPTGHLPPGITQPGIPSAGMMPPVVNQ-----PPTMEAVTSFATDIKKEPLDYDE------IDEQLEEPDESATKNKHYACNQCGAMFSRMFSLNRHKRIHTGERGYKCEICGACFRTQSQRKTHSFTHTGERPFKCHLCPATFIQQGNLKRHIWTHTGEKPHVCNMCNAGFLSTSDLKRHIRTHTGEKPYKCGHCNCSFTTSGNLKSHMKTH 3563
            N+A  +R    +KP K  C ECG  F+   +L  H  IH+ +KPYKC+ C   F  N  L  H R H+    + C +C ++F+  S L  H+    G          KP  CN C   F +N  L +H R H     +KC  C ++F     L +H   +H+ E+       P   ++      Q +  +       GE+ + C  C K+F     L  H  +H+      ++P   +   +                     HL    +  GI S G  P   ++       T +    +     ++P   +E      +   L       T  K Y CN CG +F     L  H+RIHTGE+ YKC  CG  F   S   TH   HTGE+P+KC+ C   F Q  +L  H   HTGEKP+ CN C   F   S L  H+  HTG+KPYKC  C   FT + NL  H + H
Sbjct:  183 NLAGHQRIHTGEKPYK--CNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIHTG---------EKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQI-IHTGEK-------PFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHT-----GEKPYKCNDCGK---------------VFTQNSHLA---SHRGIHS-GEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIH 611

HSP 2 Score: 166.392 bits (420), Expect = 1.970e-42
Identity = 138/471 (29.30%), Postives = 196/471 (41.61%), Query Frame = 3 
Query: 2211 VNIAPKKRKKPEKVACGECGLTFQFKEELMLHMRIHS-DKPYKCETCQLSFVNNVELKRHYRTHSS---FSCIQCNESFTTHSHLQEHEKSKHGAEPLLPDSKSKPMTCNTCKMSFSNNVELKRHYRTHAF---FKCKFCSESFVSWEQLVQHSANVHSKEETPSTPSTPLNQSDETIDEKQSNDTSEDSENVVGEEDFTCYHCSKSFPTMDILQKHLKVHSI-KQEPADEPGPSSSLPEGANXXXXXXXXXXXXFMNPTGHLPPGITQPGIPSAGMMPPVVNQPPTMEAVTSFATDIKK-----EPLDYDE------IDEQLEEPDESATKNKHYACNQCGAMFSRMFSLNRHKRIHTGERGYKCEICGACFRTQSQRKTHSFTHTGERPFKCHLCPATFIQQGNLKRHIWTHTGEKPHVCNMCNAGFLSTSDLKRHIRTHTGEKPYKCGHCNCSFTTSGNLKSHMKTHV 3566
            V  +P  R K  K  C ECG  F     L  H RIH+ +KPY+C  C  +F     L  H   H+    + C +C + F+  S+L  H++   G          KP  CN C  +F  + +L  H   H     +KCK C + F     L  H   +H+ E+         N+  +    + S  T +      GE+ + C  C K F     L KH ++H+  K    +E G + S                         +   +T+  I   G  P   N+   +    S   + ++     +P   DE      +   L       T  K Y CN CG +F++   L  H+ IH+GE+ YKC+ CG  F   SQ   H   HTGE+P+KC+ C   F    +L  H   HTG+KP+ CN C   F   S L  H R HTGEKPYKC  C  +F+   NL +H   H 
Sbjct:  102 VEKSPNNRGKHYK--CDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTG---------EKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHR-RIHTGEK-----PYKCNECGKAFSVRSSLTTHQTIH--TGEKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFS-------------------------MHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHT 528

HSP 3 Score: 155.221 bits (391), Expect = 6.493e-39
Identity = 119/418 (28.47%), Postives = 176/418 (42.11%), Query Frame = 3 
Query: 2256 CGECGLTFQFKEELMLHMRIHS-DKPYKCETCQLSFVNNVELKRHYRTHSS---FSCIQCNESFTTHSHLQEHEKSKHGAEPLLPDSKSKPMTCNTCKMSFSNNVELKRHYRTHAF---FKCKFCSESFVSWEQLVQHSANVHSKEETPSTPSTPLNQSDETIDEKQSNDTSEDSENVVGEEDFTCYHCSKSFPTMDILQKHLKVHSI-KQEPADEPGPSSSLPEGANXXXXXXXXXXXXFMNPTGHLPPGITQPGIPSAGMMPPVVNQPPTMEAVTSFATDIKKEPLDYDEIDEQLEEPDESATKNKHYACNQCGAMFSRMFSLNRHKRIHTGERGYKCEICGACFRTQSQRKTHSFTHTGERPFKCHLCPATFIQQGNLKRHIWTHTGEKPHVCNMCNAGFLSTSDLKRHIRTHTG 3485
            C ECG  F  +  L  H  IH+ +KPYKC  C   F +N  L +H R H+    + C +C ++F+ HS+L +H+         +  +  KP  CN C   F+    L  H R H     ++C  C ++F     L  H A +H+ E+       P   +D      Q++  +       GE+ + C  C K+F     L +H +VH+  K    +E G + S+                            +T       G  P   N    +    S           Y  I +++       T  K Y CN+CG  FS   +L  H+ IHTGE+ YKC  CG  F   S    H   HTGE+P++C+ C   F  +  L  H+  HTG+KP+ CN C   F   S+L +H R H+G
Sbjct:  255 CNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQ---------IIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQA-IHTGEK-------PYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVH-------------------------SSLTIHQTIHTGQKPYKCNDCGKVFRHNS-----------YLAIHQRIH------TGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIHSG 613
The following BLAST results are available for this feature:
BLAST of TCONS_00020222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6654.642e-4729.87Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 ... [more]
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