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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020173 ID=TCONS_00020173|Name=TCONS_00020173|organism=Clytia hemisphaerica|type=transcript|length=1008bp
NNGATGAGAAGATACGAGAGGAAATTTGCCGCTTCTTGCAACAAATTGAA
AACGAAGatcaagaagaagaagaagaagaaagccAACCCAACGgtTCTCT
AAACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTACACTTCGCCA
ATAGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAGATTCTGCATC
GTTGAATCCACTGCTTTCAAAAGAAGGCTTAACAAACAGTTGAAAAGGAA
AATCATGACCCCCGTCCGAAGATCAGCAAGACTTCGAAGATCGGATATTC
CGAATTTCCTTCGAGAAGACGATCGTCTCATTGACTCGCCCACTCAAGTT
GAACAAGACATTATTGAAGGAAATTTAGGCTTTGTACCAAGCAAATTTAT
AAATACTCCTTTGAATAACGGCTGGTTGATCgaggaagaagaaaaagaac
cgGTAGACGAAGATTGCGCATGCGAATTATCTTTCAtggaatgataaaaa
attttttcgattttgtatATAGAAACACTTGTGAACGATATCTGGTTTTG
AATTTGTATATATGGGATAACTTTGAGTTGTTGGTTATAAATAATCTATT
TCAACTACATAGTGATGATAATGTTCAGCCATTTCTAAAGTATTTCTCGA
TATAATTACCagtgaaaacaaaaatggctgttTATTAGTGTATTGAATTC
TTTAGATATTGAACCATGTGGATTATGACGTAAGTTCGTGAAGACTCTTT
CAGTACGAAGAAGGCTTAGTCTTTGATTATCCTCTATTACTCTCTATCAT
AATGtatcttttcaaaaacatttcatttacttgccaaaaaaattgtaaat
atgtTGTTTTCTTTCATCTGTGGTGGTCTTACAGCTGATTTTGTACATAT
CTTACTAAGTATTTTATTCTTCACTTGCTTTGTGAATATATGCGGCACAA
TATTTGAAAGTCCATTACACTGTCTTTACTTGTTTACTTTATGTAACCCT
TTTTGTTG Run BLAST on NCBI protein sequence of TCONS_00020173-protein >TCONS_00020173-protein ID=TCONS_00020173-protein|Name=TCONS_00020173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
DEKIREEICRFLQQIENEDQEEEEEESQPNGSLNRLNYAITPGRRVHFAN
RDSPIDFKSSIIRFCIVESTAFKRRLNKQLKRKIMTPVRRSARLRRSDIP
NFLREDDRLIDSPTQVEQDIIEGNLGFVPSKFINTPLNNGWLIEEEEKEP
VDEDCACELSFME Run BLAST on NCBI transcript from alignment at sc0000350:346607..348239+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020173 ID=TCONS_00020173|Name=TCONS_00020173|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0000350:346607..348239+ (Clytia hemisphaerica)
NNGATGAGAAGATACGAGAGGAAATTTGCCGCTTCTTGCAACAAATTGAA
AACGAAGatcaagaagaagaagaagaagaaagccAACCCAACGGTATGTT
TTTATTTCCCTATTATGTTGCTCTGAATAGTCctaatttgatatgaaatt
aaaaGGTTGAAAAGAGGCAGGAACATTTTAACAGTCGCTCAGTTTTGTGT
ATCAATATTATACTGTAGTAAGGATTTGCAGCCGCATTCGGAGGCGACCC
AAATAAAATAGCTGTCTACCTGTAGGAGGGCTTCACTCTTTTTCCTGGAT
TTTTCCCGCTCACTTTTGATCCGTCTCTAATTGCTAAGCATTAAACAGAG
AGGCATCCAGTACCATTTTGTGAGTCTTTCTGAACACCTTGTACACTGTA
GCCGAATCTATTTAGTTGGCATCaacaataatttgatttttttgattttc
aggtTCTCTAAACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTAC
ACTTCGCCAATAGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAGA
TTCTGCATCGTTGAATCCACTGCTTTCAAAAGAAGGTATGAATTGttgat
tttaacagtttttcaaaagttgtcTCACTTCTTTATCTTTCCtagtgttt
gtttgtttgtttgtttgtttgtaattgTTATTTATTGTTGACATGATGTC
AGATGGTAATGGTGAAGTTTGCCTGTGAATGGCAGTCTTTCTTCGATATT
ACCTGTTGTTTTCTCTACCTCTCATACAAATTAACAGCTACTTTTTTCAC
AGTGTTTCTTCGACGTAGCGTCTAACGTTTGATCCATCGTCATTTTTTCA
GGCTTAACAAACAGTTGAAAAGGAAAATCATGACCCCCGTCCGAAGATCA
GCAAGACTTCGAAGATCGGATATTCCGAATTTCCTTCGAGAAGACGATCG
TCTCATTGACTCGCCCACTCAAGTTGAACAAGACATTATTGAAGGAAATT
TAGGCTTTGTACCAAGCAAATTTATAAATACTCCTTTGAATAACGGCTGG
TTGATCgaggaagaagaaaaagaaccgGTAGACGAAGATTGCGCATGCGA
ATTATCTTTCAtggaatgataaaaaattttttcgattttgtatATAGAAA
CACTTGTGAACGATATCTGGTTTTGAATTTGTATATATGGGATAACTTTG
AGTTGTTGGTTATAAATAATCTATTTCAACTACATAGTGATGATAATGTT
CAGCCATTTCTAAAGTATTTCTCGATATAATTACCagtgaaaacaaaaat
ggctgttTATTAGTGTATTGAATTCTTTAGATATTGAACCATGTGGATTA
TGACGTAAGTTCGTGAAGACTCTTTCAGTACGAAGAAGGCTTAGTCTTTG
ATTATCCTCTATTACTCTCTATCATAATGtatcttttcaaaaacatttca
tttacttgccaaaaaaattgtaaatatgtTGTTTTCTTTCATCTGTGGTG
GTCTTACAGCTGATTTTGTACATATCTTACTAAGTATTTTATTCTTCACT
TGCTTTGTGAATATATGCGGCACAATATTTGAAAGTCCATTACACTGTCT
TTACTTGTTTACTTTATGTAACCCTTTTTGTTG Coding sequence (CDS) from alignment at sc0000350:346607..348239+ >TCONS_00020173 ID=TCONS_00020173|Name=TCONS_00020173|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000350:346607..348239+ (Clytia hemisphaerica)
GATGAGAAGATACGAGAGGAAATTTGCCGCTTCTTGCAACAAATTGAAAA
CGAAGatcaagaagaagaagaagaagaaagccAACCCAACGgtTCTCTAA
ACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTACACTTCGCCAAT
AGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAGATTCTGCATCGT
TGAATCCACTGCTTTCAAAAGAAGGCTTAACAAACAGTTGAAAAGGAAAA
TCATGACCCCCGTCCGAAGATCAGCAAGACTTCGAAGATCGGATATTCCG
AATTTCCTTCGAGAAGACGATCGTCTCATTGACTCGCCCACTCAAGTTGA
ACAAGACATTATTGAAGGAAATTTAGGCTTTGTACCAAGCAAATTTATAA
ATACTCCTTTGAATAACGGCTGGTTGATCgaggaagaagaaaaagaaccg
GTAGACGAAGATTGCGCATGCGAATTATCTTTCAtggaatgaGATGAGAA
GATACGAGAGGAAATTTGCCGCTTCTTGCAACAAATTGAAAACGAAGatc
aagaagaagaagaagaagaaagccAACCCAACGgtTCTCTAAACCGATTG
AACTATGCAATTACACCAGGGCGTCGAGTACACTTCGCCAATAGAGATAG
TCCAATCGATTTCAAATCTTCCATCATCAGATTCTGCATCGTTGAATCCA
CTGCTTTCAAAAGAAGGCTTAACAAACAGTTGAAAAGGAAAATCATGACC
CCCGTCCGAAGATCAGCAAGACTTCGAAGATCGGATATTCCGAATTTCCT
TCGAGAAGACGATCGTCTCATTGACTCGCCCACTCAAGTTGAACAAGACA
TTATTGAAGGAAATTTAGGCTTTGTACCAAGCAAATTTATAAATACTCCT
TTGAATAACGGCTGGTTGATCgaggaagaagaaaaagaaccgGTAGACGA
AGATTGCGCATGCGAATTATCTTTCAtggaatgaGATGAGAAGATACGAG
AGGAAATTTGCCGCTTCTTGCAACAAATTGAAAACGAAGatcaagaagaa
gaagaagaagaaagccAACCCAACGgtTCTCTAAACCGATTGAACTATGC
AATTACACCAGGGCGTCGAGTACACTTCGCCAATAGAGATAGTCCAATCG
ATTTCAAATCTTCCATCATCAGATTCTGCATCGTTGAATCCACTGCTTTC
AAAAGAAGGCTTAACAAACAGTTGAAAAGGAAAATCATGACCCCCGTCCG
AAGATCAGCAAGACTTCGAAGATCGGATATTCCGAATTTCCTTCGAGAAG
ACGATCGTCTCATTGACTCGCCCACTCAAGTTGAACAAGACATTATTGAA
GGAAATTTAGGCTTTGTACCAAGCAAATTTATAAATACTCCTTTGAATAA
CGGCTGGTTGATCgaggaagaagaaaaagaaccgGTAGACGAAGATTGCG
CATGCGAATTATCTTTCAtggaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020173-exon-sc0000350-1491911889:346607..346699 | TCONS_00020173-exon-sc0000350-1491911889:346607..346699 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1510915933:346607..346699 | TCONS_00020173-exon-sc0000350-1510915933:346607..346699 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1575043694:346607..346699 | TCONS_00020173-exon-sc0000350-1575043694:346607..346699 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1491911889:347059..347191 | TCONS_00020173-exon-sc0000350-1491911889:347059..347191 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1510915933:347059..347191 | TCONS_00020173-exon-sc0000350-1510915933:347059..347191 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1575043694:347059..347191 | TCONS_00020173-exon-sc0000350-1575043694:347059..347191 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1491911889:347458..348239 | TCONS_00020173-exon-sc0000350-1491911889:347458..348239 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1510915933:347458..348239 | TCONS_00020173-exon-sc0000350-1510915933:347458..348239 | Clytia hemisphaerica | exon |
| TCONS_00020173-exon-sc0000350-1575043694:347458..348239 | TCONS_00020173-exon-sc0000350-1575043694:347458..348239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:346607..348239 + |
Blast
The following BLAST results are available for this feature:
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