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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020132 ID=TCONS_00020132|Name=TCONS_00020132|organism=Clytia hemisphaerica|type=transcript|length=3315bpRun BLAST on NCBI protein sequence of TCONS_00020132-protein >TCONS_00020132-protein ID=TCONS_00020132-protein|Name=TCONS_00020132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp RNFAFSGFESHRWRSVGKSFSKLENIENKSHRTRKSEKLRTRDWKVRNKSRun BLAST on NCBI transcript from alignment at sc0000349:75567..89531- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020132 ID=TCONS_00020132|Name=TCONS_00020132|organism=Clytia hemisphaerica|type=transcript|length=13965bp|location=Sequence derived from alignment at sc0000349:75567..89531- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000349:75567..89531- >TCONS_00020132 ID=TCONS_00020132|Name=TCONS_00020132|organism=Clytia hemisphaerica|type=CDS|length=43407bp|location=Sequence derived from alignment at sc0000349:75567..89531- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020132 vs. Swiss-Prot (Human)
Match: A16L1 (Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2) HSP 1 Score: 414.846 bits (1065), Expect = 7.785e-131 Identity = 241/608 (39.64%), Postives = 357/608 (58.72%), Query Frame = 2
Query: 380 AAELQGWRKNILQQLETRKAVEIRPFQELIESHNKLITAGSATKIRNQELEHQSYQLKQEIHELQGKVAVGNTGSPLSGNEKYLEQKIFKLQEEVTELHRNKGENAQKIIQLTAELKEKDEIISSKEAHILDAQNNQDAMAFESRKLQLTISELESTNQMLKDEHQALQMLHSSLETKINKLQEDNMQLVERWMQEKAKVADQINFENEMVASLRXXXXXXXXXDAANEPIQIK-----------------ATSYSKSPDRTGSFHLPVPAYVCITS-------------------------------VPDRARHTMDNAHDGEVSSLRFSISGKYFVSGGADRKVKVWEVGRGSCTPHGTLMGCNQSVTCVRFDSTEKMILAASNDNACRIWGLHDQRLKHTLTGHTGKVLSAKFLGEDSSKIVSGSHDRTLKIWDLRSKACTKTIFAGSSCNDLLTADVAGTTIISGHFDKKIRFWDVRQDQNINEIQLQGRVTSLDLSQDMNFLLAVTRDDALKLIDMRNNQIISTYRCEGFKVAFDYTRACFSPDAQFVMCGSYDGGVYVWNAKTNQLEKVL-REHKSAVVATAWHPNGTCMLSCDKNKHIVLW 2056
AA+ W+++I +QL R ++ + F+E+I +NKL+ + Q+L+ + + + HE ++ G+ G+ + + Q K QEE+TELH+ +GE AQ +I L +++ KD + EA I + + E L+ + +LE NQ LKDE+ ALQ+ ++LE K+ K E+N +LV RWM EKA+ A+++N ENE + RQ +LQ++L +AA EP+ ++ TS ++ R + L PA + S VP A D AHDGEV++++FS + +GG DR+VK+WEV C G+L G N +T + FDS +LAASND A RIW + D RL+HTLTGH+GKVLSAKFL D+++IVSGSHDRTLK+WDLRSK C KT+FAGSSCND++ + ++SGHFDKKIRFWD+R + + E++L G++T+LDL+ + LL+ +RDD LK+ID+R N I T+ GFK D+TR FSPD +V GS +G +Y+W+ T ++EKVL ++H S++ A AW P+G+ ++S DK VLW
Sbjct: 7 AADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEKHDVPNR-HE----ISPGHDGTWNDNQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQRKDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLERANQTLKDEYDALQITFTALEGKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVFD-AHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFL-LDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE---QCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGCKAVLW 604 The following BLAST results are available for this feature:
BLAST of TCONS_00020132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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