TCONS_00020129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020129
Unique NameTCONS_00020129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020129 ID=TCONS_00020129|Name=TCONS_00020129|organism=Clytia hemisphaerica|type=transcript|length=697bp
ATTATTTTCAGCGTTTTGCCGTTGGATTTGTGTTCCGACGAGATACAGTG
GACTATGATCTGAAAAAATGGAGTTGATCAAAATGTTGCAGAAAATTTTA
ATAATGGCCTTGACCAAACCGATTTCATTGTTTGCGTACAACGGAGTACA
CAAGACAACATTTTACACCAATGTCAAATTAGACGAGGCGATGGAACAGC
CGCACGTATTTTCTGAGGTTGAATGCATTTTTAAATGTCAACATGTATAT
TTGGATGCTAAAGATGCTTTTTATACTGTTCATCACGAGTGTTTTTGTAT
CAACGGAATATTGCTGGAAAATCAAATTGGGTCAAAATATTCAGGAGAAA
TGCTGACCAAGATTGACAAGACAGAAAAGAAGACCGAAATAAATCTTATT
TTGAATCCTAATACAGatccTTACTCTATCAATGGTGCTTTGAATCTGTT
TGCAGTCCTCAATGATAAAGAAGCTTACGAAACATACGGCGAGATAAAGA
TAAGTATTGGCGAGGAGTCTCAAAATCAGAATCTGATATTATGGCAACGC
TCTACCGACGATCCGGCCCACGGCACTAACTCTTCAATTTTGACTGCTTA
CGTCAGTAAAAAATTCAATGCGTCAATGGATCTAATGACACCAGAAGCAG
AGCAGATGGTCAAATTCTCAGGAGCTGTCTACGAAAAGCAATATGGG
Run BLAST on NCBI

protein sequence of TCONS_00020129-protein

>TCONS_00020129-protein ID=TCONS_00020129-protein|Name=TCONS_00020129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MELIKMLQKILIMALTKPISLFAYNGVHKTTFYTNVKLDEAMEQPHVFSE
VECIFKCQHVYLDAKDAFYTVHHECFCINGILLENQIGSKYSGEMLTKID
KTEKKTEINLILNPNTDPYSINGALNLFAVLNDKEAYETYGEIKISIGEE
SQNQNLILWQRSTDDPAHGTNSSILTAYVSKKFNASMDLMTPEAEQMVKF
SGAVYEKQYG
Run BLAST on NCBI

transcript from alignment at sc0000349:25584..27747-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020129 ID=TCONS_00020129|Name=TCONS_00020129|organism=Clytia hemisphaerica|type=transcript|length=2164bp|location=Sequence derived from alignment at sc0000349:25584..27747- (Clytia hemisphaerica)
ATTATTTTCAGCGTTTTGCCGTTGGATTTGTGTTCCGACGAGATACAGTG
GACTATGGTTAGTTCGAGATTCTATTACTCGAATATTTCTATAATTCGAA
CTTGTTTTCAGGGAGGATCCTTCGTAAAATTGCTTTCTATAATTCAAATC
TCTCCTTTATTCGAACAAATTAGATTCCCTGTTTGAGTTCGAATTAGCGA
AAGTCAACTGTATTGTATTTTCTGAATCATCGATAATACACCGTGTCATC
ACTAAAGCTGGTTGTAGACTTTTTTTGTTGGATAAAATATAAAATCTAAA
TCAAACGTGAATATTTTTATATTTACAAAATTTTGTTTTCGATTTTAACG
AATTCAAGGCTCCATAAAAATCTAATCTGAATAAAGGAATTAAATCACTT
TCAGATCTGAAAAAATGGAGTTGATCAAAATGTTGCAGAAAATTTTAATA
ATGGCCTTGACCAAACCGATTTCATTGTTTGCGTACAACGGAGTACACAA
GACAACATTTTACACCAATGTCAAATTAGACGAGGCGATGGAACAGCCGC
ACGTATTTTCTGAGGTTGAATGCATTTTTAAATGTCAACATGTATATTTG
GATGCTAAAGATGCTTTTTATACTGTTCATCACGAGTGTTTTTGTATCAA
CGGAATATTGCTGGAAAATCAAATTGGGTCAAAATATTCAGGAGAAATGC
TGACCAAGGTGGATATGCATTAAAATTCATGGGTGGTACATTTCCCTAAG
ACTCGCACTAGATGTATTTTTTTGTGTGAAAACGGTGAAAACCAGACCTG
CGTTGGCCACGTTTTAACTCTAAACCCATATGTAACAAAAGTGTACACAC
CTTACTGCAAATAAGTCCATTTTAGGTGTCATGAGCATAATGAACACCTT
TGCCCATTAATTGACTTAATACTTTGCTTTCTCGATTAATTTTTAGATTG
ACAAGACAGAAAAGAAGACCGAAATAAATCTTATTTTGAATCCTAATACA
GGTATTCAGGTTTGAATATATTGAGTACCTTATCGGCCAAAACTTAGTCG
AGTAAGTGACTAAATTTTGGCTTATCGACTTAAATTAGGGCCAACTAAAA
ATTTGGGCCGACTAAAAATTTGGACCAAATTAAAAGTTTATAATTAAGCT
TTCCTTATATTCCCGTATTTTAAGCTTTCTCCTATTTTCCATCTGCTTGT
AAATTTAGAAATGGCCCAAATTTTTAGTCGGCTCTTAGTGACTAAATTTT
GACGAGATGACTAAAATTAGGGCCGACTAATAATTAAGGCCGACTAAGTT
TTGGCCGATAAGGTATACTTTATTCGCGAGATTTGATTTCGCAAGCAAAC
AGAGTCGCGAATTTTTTAAATCTATTTTCGCTAATCAGTGTATTCAAATA
TTTCACGTATAAGTATTTTCGCGAATAAGCCAAACGTCAGTTGAAAATGT
CTATAAAAATCTTTTGTCAAAAATAACATATTTACAGTATATTCTAAGCC
GATAATCTTAACAAAGAAAATTTTCCGTGTATCTAACATCACGAGTTTTA
TTTTCGCTAAAAAGAAAAAAGACAAAGATTCGCAAAACGCGAAATTAAAT
CTCACAAAAACTAATCCAATTAATGCAATCGCATTAAAATCCGAAAATTA
TTGAAAATTCAGACTTTTTGCTTTTTTCAATATCCCATCCTACATTCATT
CGTCTCATTTTTTTACGCCGATACTCAATTAATCTATTGAAAAAATCTTT
ATAAGACTACTTTTTGATTTTACAGATGGACATGATACATTTTCGCGAGG
GCTATCAGAATCATAAAAAAGGAACTTAGGGACCGGTTTCGAGTTTGCCA
TTTTTATCATTTGATTATTTTTTAAATTTTCAGATCCTTACTCTATCAAT
GGTGCTTTGAATCTGTTTGCAGTCCTCAATGATAAAGAAGCTTACGAAAC
ATACGGCGAGATAAAGATAAGTATTGGCGAGGAGTCTCAAAATCAGAATC
TGATATTATGGCAACGCTCTACCGACGATCCGGCCCACGGCACTAACTCT
TCAATTTTGACTGCTTACGTCAGTAAAAAATTCAATGCGTCAATGGATCT
AATGACACCAGAAGCAGAGCAGATGGTCAAATTCTCAGGAGCTGTCTACG
AAAAGCAATATGGG

Coding sequence (CDS) from alignment at sc0000349:25584..27747-

>TCONS_00020129 ID=TCONS_00020129|Name=TCONS_00020129|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0000349:25584..27747- (Clytia hemisphaerica)
ATCCTTACTCTATCAATGGTGCTTTGAATCTGTTTGCAGTCCTCAATGAT
AAAGAAGCTTACGAAACATACGGCGAGATAAAGATAAGTATTGGCGAGGA
GTCTCAAAATCAGAATCTGATATTATGGCAACGCTCTACCGACGATCCGG
CCCACGGCACTAACTCTTCAATTTTGACTGCTTACGTCAGTAAAAAATTC
AATGCGTCAATGGATCTAATGACACCAGAAGCAGAGCAGATGGTCAAATT
CTCAGGAGCTGTCTACGAAAAGCAATATGGGATTGACAAGACAGAAAAGA
AGACCGAAATAAATCTTATTTTGAATCCTAATACAGATGGAGTTGATCAA
AATGTTGCAGAAAATTTTAATAATGGCCTTGACCAAACCGATTTCATTGT
TTGCGTACAACGGAGTACACAAGACAACATTTTACACCAATGTCAAATTA
GACGAGGCGATGGAACAGCCGCACGTATTTTCTGAGGTTGAATGCATTTT
TAAATGTCAACATGTATATTTGGATGCTAAAGATGCTTTTTATACTGTTC
ATCACGAGTGTTTTTGTATCAACGGAATATTGCTGGAAAATCAAATTGGG
TCAAAATATTCAGGAGAAATGCTGACCAAGATCCTTACTCTATCAATGGT
GCTTTGAATCTGTTTGCAGTCCTCAATGATAAAGAAGCTTACGAAACATA
CGGCGAGATAAAGATAAGTATTGGCGAGGAGTCTCAAAATCAGAATCTGA
TATTATGGCAACGCTCTACCGACGATCCGGCCCACGGCACTAACTCTTCA
ATTTTGACTGCTTACGTCAGTAAAAAATTCAATGCGTCAATGGATCTAAT
GACACCAGAAGCAGAGCAGATGGTCAAATTCTCAGGAGCTGTCTACGAAA
AGCAATATGGGATTGACAAGACAGAAAAGAAGACCGAAATAAATCTTATT
TTGAATCCTAATACAGATGGAGTTGATCAAAATGTTGCAGAAAATTTTAA
TAATGGCCTTGACCAAACCGATTTCATTGTTTGCGTACAACGGAGTACAC
AAGACAACATTTTACACCAATGTCAAATTAGACGAGGCGATGGAACAGCC
GCACGTATTTTCTGAGGTTGAATGCATTTTTAAATGTCAACATGTATATT
TGGATGCTAAAGATGCTTTTTATACTGTTCATCACGAGTGTTTTTGTATC
AACGGAATATTGCTGGAAAATCAAATTGGGTCAAAATATTCAGGAGAAAT
GCTGACCAAGATCCTTACTCTATCAATGGTGCTTTGAATCTGTTTGCAGT
CCTCAATGATAAAGAAGCTTACGAAACATACGGCGAGATAAAGATAAGTA
TTGGCGAGGAGTCTCAAAATCAGAATCTGATATTATGGCAACGCTCTACC
GACGATCCGGCCCACGGCACTAACTCTTCAATTTTGACTGCTTACGTCAG
TAAAAAATTCAATGCGTCAATGGATCTAATGACACCAGAAGCAGAGCAGA
TGGTCAAATTCTCAGGAGCTGTCTACGAAAAGCAATATGGGATTGACAAG
ACAGAAAAGAAGACCGAAATAAATCTTATTTTGAATCCTAATACAGATGG
AGTTGATCAAAATGTTGCAGAAAATTTTAATAATGGCCTTGACCAAACCG
ATTTCATTGTTTGCGTACAACGGAGTACACAAGACAACATTTTACACCAA
TGTCAAATTAGACGAGGCGATGGAACAGCCGCACGTATTTTCTGAGGTTG
AATGCATTTTTAAATGTCAACATGTATATTTGGATGCTAAAGATGCTTTT
TATACTGTTCATCACGAGTGTTTTTGTATCAACGGAATATTGCTGGAAAA
TCAAATTGGGTCAAAATATTCAGGAGAAATGCTGACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011306XLOC_011306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020129-exon-sc0000349-1575043694:27691..27747TCONS_00020129-exon-sc0000349-1575043694:27691..27747Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1575043694:27040..27343TCONS_00020129-exon-sc0000349-1575043694:27040..27343Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1575043694:26747..26801TCONS_00020129-exon-sc0000349-1575043694:26747..26801Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1575043694:25584..25864TCONS_00020129-exon-sc0000349-1575043694:25584..25864Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1510915933:27691..27747TCONS_00020129-exon-sc0000349-1510915933:27691..27747Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1510915933:27040..27343TCONS_00020129-exon-sc0000349-1510915933:27040..27343Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1510915933:26747..26801TCONS_00020129-exon-sc0000349-1510915933:26747..26801Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1510915933:25584..25864TCONS_00020129-exon-sc0000349-1510915933:25584..25864Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1491911889:27691..27747TCONS_00020129-exon-sc0000349-1491911889:27691..27747Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1491911889:27040..27343TCONS_00020129-exon-sc0000349-1491911889:27040..27343Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1491911889:26747..26801TCONS_00020129-exon-sc0000349-1491911889:26747..26801Clytia hemisphaericaexon
TCONS_00020129-exon-sc0000349-1491911889:25584..25864TCONS_00020129-exon-sc0000349-1491911889:25584..25864Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020129-proteinTCONS_00020129-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:25584..27747 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0727003	0	0	0	0	0	0.747742	0.175007	0.367579	0.0758843	0.0736551	0.48418	1.64392	1.2051	0	0	0.491183	0.0559385	5.48702	4.77133	0.421745	0.617137	0.25007	0.22735	0.858606	0.208987	0.0996865	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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