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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020111 ID=TCONS_00020111|Name=TCONS_00020111|organism=Clytia hemisphaerica|type=transcript|length=5021bpRun BLAST on NCBI transcript from alignment at sc0000349:196051..275460+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020111 ID=TCONS_00020111|Name=TCONS_00020111|organism=Clytia hemisphaerica|type=transcript|length=79410bp|location=Sequence derived from alignment at sc0000349:196051..275460+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020111 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.386e-20 Identity = 113/427 (26.46%), Postives = 185/427 (43.33%), Query Frame = 1
Query: 1291 VLVGQSGAGKSSIIARSARDVCDMIDDGQLSGKVFVHFVGATPGSTDLVSFLKRIVAELSPDNKESISDLQGYVQLVC----RLLSK--EEIGP---VYLFIDAINQMDEDKQYYLARWLPCQLAQNIRVVISTIENTDTHQILTKFVPAPKEIACGPLDETSREEIVRNILRDYTKELHP----DQMRLLISKKGSSNPLWLAVACEELRVEAVFETVTSMIEAFPNELIDMEVNLINRLVRGENGDQIKSALLLLEVSRHGXXXXXXXXXXXXKNLHLVGS---TFEEGDEN--EKVKPG-CKKTIPARDWAIIYRNIKQLL------RPCGN--LGDGRLDFYHRSLSKAVRKQFLSGSPGEEKKHVYVHWHRVLADYFEKATDDDRRAE----------ELPYHLEQLSDSARLEKCLIDWNI 2460
++ GQSG GK++ +A S D +++ VF HF GA P ++ L+R+ L KE + Y LV RLL K E + P L ID +++ + ++ W+P +L + + +V+S + + L + A +A GPL+ ++R +VR L Y K L +QMRLL+ K+ S PL+L + + LR+ ++E V+ + P + + ++++ L + D + AL LEV+R G L LH V S T +G ++ E V G P +A + ++++ LL RP L DG L + K+ PG E H ++A K D D +LPYHL Q + L K L + ++
Sbjct: 1165 LVTGQSGQGKTAFLA-SLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGA-HVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSG---------LTVDQLHGVLSVWRTLPKGTKSWEEAVAAGNSGDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPL--------RTAAKRCYGKRPGLEDTA-----HILIAAQLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLLSKFLTNLHV 1567 HSP 2 Score: 92.8189 bits (229), Expect = 1.532e-18 Identity = 55/182 (30.22%), Postives = 99/182 (54.40%), Query Frame = 3
Query: 411 NRRGWRTIRIFVSSTFKDFLNEREILVKELFPDLRLWCEERKLRLIECDLKWGVPIGTT-GSETIQICLGELDRCCEENHVPFFLNLCAERVGWIPTSEELTANLTSHYGWVH----GLSITEMEIVHGALR--KMNPN--ALFMIREADSLEGLPDHIVEAFKESNERSVEKLSMLKTKVA 929
+++GWR+IR+F+SSTF+D ER++L++ + P L+ ++ L DL+WGV T + +++CLGE++ + F+ + R G+IP S L + H+ W G S+TEME++ R ++ P+ AL R++ L +PD F +E + ++S LK+ ++
Sbjct: 892 SQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGVTEEETRRNRQLEVCLGEVE------NAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLS 1065 The following BLAST results are available for this feature:
BLAST of TCONS_00020111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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