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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020106 ID=TCONS_00020106|Name=TCONS_00020106|organism=Clytia hemisphaerica|type=transcript|length=2373bp
GGCGGACTGAGGTTTCACAACTTCAACAACAACAGTAAGGCACACTTCCT
CTGTAGAAGGTAGCTTTACTCAAATCGTGAAACGTCCCTTTGTTTTCATA
GACAATCATAAATCACTTGACTGCTTGAGTGACAACACTTGATTTGAAGG
CGTTTCTAGTATGTGAAAGAAGTTCTCTACTAGATATCGCGAATGTCCAA
AAACAAGTGAAAAGAGCTGATACTGAACTTTTAGGTTTATAGCTAGAGAA
AATTAAAGATTTATGTCAGTGGAAGATTATTAAAGGAAAGAAGATGAACA
AAAGAAacgtgaaaaagaaatttgcacAATCGTTCCAGGGTAATTTTGGT
AAGAATGATTCCGATTCAAAGGAAGGAAATGTGCCTTATGCCATACTCAA
AGCTGCTCGTCACAGTGGTCAACTAAATCTTTCTGGTCGCTCACTTACCT
CCGTCCCAGACAAAGTTTACAGGATCAATATTGATGTCCCAGATGAGGCA
AAAAGTACATCTATGGCTGACACTGATGAGAGATGGTGGGATCAAGTTGA
TTTGCGAAAACTGATTCTTGCCTCCAATCAACTGTCAGAGATTTCTGGAG
AAATCAAGAATTTGCCAGTCTTGAATGTTTTAGATATCCATGATAATGTG
ATTGAAAAACTTCCTGAAGAAATCGGAGAGCTAAAGGAGCTTTCAAAACT
TCATTTGAGTCATAACAAACTCTCATGTTTTCCAAATTCATTTTGTAATC
TTGTTGCATTGAAATCCTTGTTGTTGTCAGGTAATGTCATTGAAAAACTT
CCTGAAGATATTGGATATTTAGTAAATGTTGAGGAGCTTGACTTGGCTCA
GAATAAGTTGACTGGTCTTCCTGAAAGCATTGGCAACATGAAATGCTTGA
AAAAGCTCAATcttacaaaaaatcaaatcactGATCTACCTGTTACATTT
GAATACTTGACTGGTTTACGTGATTTAGATTTAAGCTCAAATAAGTTGAC
AACACTTCCATCTGGCTTTGGGAAATTGACATCACTTGAAATTGTTGAAT
GTCGATATAATTTGATAAGTTCAATTTCTAAGTTTACAGAAAGTGCAAAC
ATCAAACAACTTTTTCTTGGCTATAATCGTTTGCGAGAACTTCCGGAAGA
TATCTTTGGGGATTTCCCACAGTTGGTGTCATTAGATTTGAGAGACAACT
CAATCTCCAAACTTCCAGAAAGTCTTCTTGAACTGAAGATGCTTGAAAGG
ATTGACCTTACAAATAATAACATTTCTGGTTTGCCGTATGTTTTGGGCCA
TATGAAATTGAAAGCTCTTACTTTGGATGGAAATCCTATGCGTGGAATTA
GGCGTGATATCATAGCTAGAGGAACTCAAGCAATTCTTGAATATTTGCGT
AGCCGTATGCCTATCCCTGAGCCTAAAGAAGAGATAGTTGAAAGTCCCAA
GAAGAGTGAAACTGTTGCTGACAATAACTCAACCAATGAATCACAAATTA
AACCAGCACGTTTCGATGGAGAATCAAAAGTTCAAAGCAGTGACGCCAGT
AAGCAAAACCATCCCAAAGAACCTAGCAAAGCTGTTGTTGATCAATATCT
CATTGCAACCACCAAAGTATTAACTCATAACAATGGCTCTTCAAACATTC
CTGAATCTGTTTGGCTCCCTGGTGCAAAAATCTCTAACATCAATTTCTCC
AAAAATACACTATCAGAGTTTCCTTCAGAAATTATGCAATATAAAGAAAG
TTTGTCTGAGATTAACATTTCTCACAACAGAATAACTGCACTACCAGCAT
TGATTGGTGATTTATCCAAGCTTACATTTATCGATCTCAGTAACAACATG
CTACAGGCATTACCAGAAGAAATCAAAGTTTTACCACATTTGCTTCAAAT
CGTACTTTCCTTCAACAGATTCACTACCATGCCCAAGCCCATGTTTGAAA
TGAAAAGTCTCCAAACGATTTTAATGGCAAATAACCAGTTAAGTGATATA
GATGTTGATGGACTTTTACAGTTGAAAACTGTGCAAACACTCGATCTCTC
CAATAATAACATTGCCAGAATACCTCCCCAACTTGGAAATGTTGAATGGC
TAAAATCGCTCAACTTAGATGGAAACTCTTTCCGATCACCTCGTCCACAA
ATCTTGATGAAAGGTACACAATTTATTCTAGGATATCTCCGAGATAGAAT
CCCTACTTGAACAGATTGAACTGAAGAGATTGATTTCTGATGAGCCGTGA
TAAAATgttcagttttttttcagatttttagtCATTATTTCCCTGATCTT
ATTGAGTAGACATTAGTTTTGTGGACAAATTTTCAGAATCAACTTTTAGT
TGTTTCTTTATTGCAATATATTG Run BLAST on NCBI transcript from alignment at sc0000349:175005..189345+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020106 ID=TCONS_00020106|Name=TCONS_00020106|organism=Clytia hemisphaerica|type=transcript|length=14341bp|location=Sequence derived from alignment at sc0000349:175005..189345+ (Clytia hemisphaerica)
GGCGGACTGAGGTTTCACAACTTCAACAACAACAGTAAGGCACACTTCCT
CTGTAGAAGGTAGCTTTACTCAAATCGTGAAACGTCCCTTTGTTTTCATA
GACAATCATAAATCACTTGACTGCTTGAGTGACAACACTTGATTTGAAGG
CGTTTCTAGTATGTGAAAGAAGTTCTCTACTAGATATCGCGAATGTCCAA
AAACAAGTGAAAAGAGCTGATACTGAACTTTTAGGTTTATAGCTAGAGAA
AATTAAAGGTAGGtattttagaagatttttgcaaatttagaaattctgCT
TCAACATATTGCCAAATATTTGGCAAAAGTTGCAAGCCTGGGGGAAACAG
GAGGAGCTGGAATCTCATCATTTAACGTgggaattgaattgaattgaatt
gaatatatttttactgTCCGGTTAGACAGAAGGAACAACCCTAATAGAAa
ctaaattctaataaaaatacAAGGTTGTCCTGAATATCGTAAAATATATC
TAATAAAAACTATGAGAAAATATACATGTTAAAAATAGCTGTAATAGCTT
TAAGGTGAAATATACAGGTGGTTGCACCCCAAAATCACGCGGTACCCCAA
AACCcacaatttcataaaatgcAGTGTCAGTTATACTCCTTATGGGAAAC
TAAGTGTTAATATGCATTTCCAGATACATTAGTAAAAGGGCTAAACagaa
aacaataatttttcatattgcaagCTCCTTACAGAAAATTACAGAACTGT
AAcgtcaaaaaaaacaacatggaaaaaacacgttttttgagaaaaagcca
ataaaataatgaaacttGAGACTAAGTTTGCAATTATGGTGAATTCTGGT
AGCCCATATAACCCATCTTCGAAAATAGAGCTAATGGAGTTGAGTCTTTA
GCTTATCTTGAGATATTCAGAcccaaaactcaaaatttcgaCTGTGGGTT
TTGGggtgcatttttttttttaatgacattagtcaatatataaaaaaaat
caacaaacaaCTGGTCAATTTCAAGAAGTCCTTCTCTGAAACACAATTTC
Tttcaatagcaacaatatttttcaactaaaaatgaaaaaaataagtgaaa
atagcctaaaaaatGCTGTTTCTGTCCATACTCTTTACATTGTTAAAATG
TTCGACAGCTTTTTCATAATCTGGGACATtgaatttatcagattttaaag
GAACCACTTTCAGAGGACCATAAATCACATCAGCTAAGTTAAACAGTGAC
CCATCTGGCAAATGAGCTGTTGTATCTTCAAGAATGGTACCTAAGCCTAC
TTTGGGCTAAGCACCTAACTTCCAACTTCTCAACAAGCCCGTTTTCATCA
GCCAAGAAACGTTTCCAGATTTTACCAACATATACAGCTTGCTAATGCGC
TTTGTACAAtaaattacaccataccactTCCCCAAGAGAGAATCCTCAGT
CACTGGAGGGCTGAGTGTTTTCCAAGTTGCTCTTAAGATATCTGCAGCCC
TTACATCATCCGTGTTGCTGGtttcactttcaaaatcaaTCTCATTTTTG
GTATCATCAAAATCGGTATCAACAAAATCTGATTCACTTTCCTCGGTTTC
TGAAGCAGGTGCTCTCCTCTTGGAAGAACTTGCTGTAGCTGCTGCTGGAA
CAATCATGACTGCCGTTATCCCATCAACTTTGCACTTGGCTTTACTACAA
GCTGACTTCAAAATGCCCTGACACACTGGACATTGCTTGAGCCCGAATGC
TTCGCATTTTGGTTTTTCACAAATACATTTCTCTTTGCACTTGAGAAATG
CATGTTTTgtatcttttccttttttttggcaGTGGCTTCCTTACTTTTGA
CTTGCTCTTGTTTCTTACTCTTTATGTCTTTCAGTACAGTGAGCACATTA
TTGACCTTCATTGATCCATAGACTTGTGTGATCCTTGTATTTTTCTTAGA
CAGCTTTGGTTTAACCTTTTGCACAGGCAAGAAACCAGGGATTAGTTTCA
GCACAATGCTCTTTTCATGCAATTCATCTATGATACCCATGGCCTGGTtg
aatttatcttgccaatacTGTGATGAGCCACGTCTTTTATCAGGAGAGAC
AAAGTTGATGATGTTGAAATTGCAGACGAGTTTGCATCGTCATCATTTGT
ATCGACGACTGCAGCAGCCCTTTCAAATTTATCGTGCTGCATCATCTCTA
CGCTTAGTTTTGTTGACGTGATACCAACCTTTCTTGCAGCATTAATGATA
CCCTCTTTGGAAATCCATTTATCCCAGATGTTTGCTAGAATAACCATGAA
GGCTTCTCGACTTAAAGTGTTAAAGTCAGTAAACATTgatgctttttctt
tttcatactcttGGCGAATGTTCTTGTTTAACTGGTCCAAAAGTTGAGTT
ACTCCTCTTGTGTCTGGTGGTGTCACAAACAGCTGTATTTGTTTTGAGAG
GAGGAATTCAAGAACCTCGTGGTTCAGCCGAGAACTATGTCTATCTGATA
GTAAAACTACTGGCCTTTCAACTCCTTTCAGCTCCAAGTAGTCATCAAAT
TCACGAGCAGCGGCAAGAAAGGTTTCGTGAGTAGAAACTCCATTTTCGGC
AGTGCTGATTAGAAGGTAGGTTAGGTATCTTTTCTGCAGCTACAGGAGGG
AACATTGCACTTGTTATTCCTATGGATTTGAAAATCACTTGGCTGCTTGG
CACATGCACACATCACCTGAAATGAAGATGATTATATATCATCTCTCTTG
TTCTTAGTTGTAAGAGTCACAGAGATTGTGTCACAATTGACCTGTTTTAA
GTGCTGCAAGCCACGTTTGCCAATTTCTCTGCACCAGGCCTCAGCTGCCt
tcaattgtttttctttttcacttgTTTGCTTTCTTACAACCAATGCCTCC
GCTTTCGTCGATGGGTttgatgatttgaaattttttttctggtgtATACG
CATAGAGAACTTGGgcttcattttttatatttactaatactaaattaaaa
aaataggtTGACAATAAAGTATGTTTAAATCAACTATAAAGCTTCTTATC
AATCAAATGAATGACTTAATAGGTGGAGTAACTATCAAANTTTGGGGTGC
GCAAAAAAAAATAGTACCAACTTCAACACCttgtaaaaaaatcaagagat
gCATATGAATGATCAGATACCCCAGGAAGAACCATTATTAgtccaaagtt
ttgaatggtataataaaaataatccaATAACCAACACAGCTCATAATATA
ACGCCCtgtttttttgcgtgggttttGGGGTGCAACCACCTGTAATACAA
TAAACTATATacaaaaaaagatgttttttaaCAATGGTTGTTCTAGGTCA
CGTACTTGCTCATATAGTATTCTTTGGAGATTTCTTTGAGTTCTTTGAGT
TCTAACtcagaaagttttttatcatcAAACTTACGTTGAAGCTCATTCCA
TTGGTTTGAGGATATTCTAGTGAAAGAATTCAATCCGTAGTTGGTAGTGT
TGACATTTGGTCGAAAGATTAGCTCAATGAATTTGTCCTTAGTTTCAATC
TTATGCTGagttttttcaaatgttaaattttGGAGGGACTCGATGGGGAG
GCTAGCGTTGAAGTATTTATAAACATAGATAATGTTCATGATTTTGACTT
GGTCAAAAACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTTTAAGGGCGGA
GGGGAATATTCCTGTTTCAAAGGACCTGTTGATTAAAAAAGAGATTTGAG
TAGATAGGTCTTGATTTAGAAGTTTGAGTATCTTAACAGGAATGCTGTTA
GGGCCTGATGATTTAGATGGTGAGAAGGAGCTTATTATTTTACTGATTTC
TTCTGGTgttgagggtgtgaaaaagatTGAGTTTTGGTTAGGGTTTTTCA
TGAAGCTTGAGAAGTGGTGGTTGGCTGGCTGTATCTTGTCTCTGATAGAG
TCAGCTATAGTTGTGAAGAAATCATTAAAAGAATTAGCTACTTCGGCAGG
CTTGGATGATACTTTGTCTCCAATTGAGATTGATATTGGAGAGGAGGACT
TCCCAGTCCTTGATGAAATGATGTCTCTAACCCCGGACCATACTTTGTTC
ATATTTTTTGAGTGTCTATTGAAATAGTTAGTAAAGTAGATGAATTTGCT
TCTTCTACTCAGAGATACTATAGAATTTCTATAGCGTTTGTATAAAATTT
TGTAGTTCTCATTCTTAGTCTTAAAGTATTTTCGTTGGTAGAAATCTCTC
TTGGAAATTGACTTGACAATTCCAGGAGTGATCCATGGTTTAAGTTTAGA
TTTGACCTGGTCTTTGGTAAGTTTGACTGTGGGAATATGTCTCTCCAGAA
GGTCTTTGATGATGGATGATGGGGACTGAATACTTCATCATCTCATATCA
TacaccgtgagtggtcctaaatctgacagccctgcccTGCCTGTCTGGAA
AGAAGAGAATATTTATGCCAGAGATTTCTTGGCGTAGCCTTTGTGTagta
aggggtcactcacaaatcgattttaggttagaagaacgtcaattgacgta
taTGGGTGAGTGGGTTTAAGGTTGTTGACGTTTTTCAgaaacatcgattt
ttcattccatgccaaatattacttctcgccatgttttagtctacacaata
gacagatccaggcttttaggccttactcttggtctataggcactgctata
ggcggccacttaGTGACCCCcaccccgggggggtactaggcttctaaatt
ttggtccattttttccaaattttggtttgattttcaccaaattttggtca
aaatatttggaaatcaaccctttgagagagaaatttttgattttcgtgat
tttgggaccctttcagacagttacatcaatatgccttcttacctgtcttt
aaaaatataaataaaagtaattacgaaaaaggacgcgaaaaaaaaagaca
taagtgtgagaacagagtaatcaaactcgttagaaaaagtaccattagaa
gtcataaaaaatcaacctgaataaatgcaatcggaaTTCCaaagaacttc
ataattccccaaacaacattacattactatgtcaaactcccattacataa
attttacaattacgtcagagtaggctacgctcgccaccgaagaggtttat
ttggaaagggtaattacattttattgttggcttcttttttaaagattggc
cgggttggaaaagtatgaatttctttgtacatattttacctaccccaaat
atttaggaggctgagttttaaacgaattgNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAAAGTTTGTctcagcctttttataatgagcaagacatacgttctctga
ttacgcaattttcatattgatattttcgaggcattttgatgtaactgtca
gaGAGACTAAcctttgaatttgtacccctttgagagacttttgaggaatg
agaaaaggtacccttatggctcgcacatacccggcacccattttgcctaa
gtacccccccgggcccccaccgggaattgcttattaataggcagtgtaga
cctaaagctctaaaacagcatctaataacatgaaaaccagaatatgattc
ttcaatgggaatcaaaactataaagtgcacttgcAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
acattccaacaacttccatcgaaatgatctatcacagctcagtctaccat
ttttagcgcggtccaaggattgagccgagaacgctccgcgaactcctgcg
tgggtgaaaacttcaatctgtcaatcattttctcaagcgaagagtacgct
aagcgattctagctttacgatagtgccgcgggacaTCAATGGTtagtatt
caatcatcattatccctttattttcattcctagaacttttgcaaaaaaaa
ggaaaaatagaaaagttgtattttttactgctctattcacatactgaatt
tgaaagatcttctatgtggcgtttttttgcaaacttcaaaaaattgattt
ttgtcccgcctttgcgggactttggcttaagtgcttgagtgcagcatagg
gtacaaagtccaaacatgcgtttccgtaatttttgtatgaagagttaggt
ctatactgataGGTTtgaacataatagacaacattcacaaaagatgttta
tcaatagagattttaaataaaagaatgtttaaaacacagctgattggctt
aggtttcgaaactctttATTGTtccattaaaacctcagtgcgcatgcgat
ttatctggagaatttcaattcaaaacaagagcagtgctcatagcccgaag
agtaggagttttacgctcaaaacgaaggaagatatgacgtagcctagcca
tgtttctgtttgatcgcttcgtttgttttgaaaaccaaaacaaacggccc
gatgtttatgtcttttctttgtttgacggcCCGAACGGCCCTTTCTGTCG
CTACATACTACGGAGATAATTAATTACGGGAATTTTGTGAACAAGTTAAG
AAATTATCTCCGTTTTTTTTTTTTTTCAAGTATAAACTATGCGAGCCgta
gtgaaaatcaagatggctgacgaaacagcgatgaaggcagtttttatcaa
ttttcggggatatcaaggtgtttgacgtttttgggtgtgggtgggtgggt
cagcttttaaaacgtcaattgacgttcttttaacctaaaatcgatttgtg
agttACCCCTAAGCCTATGAAATCCAAAGTCTGCGCCGGAGATATCCGGC
GTAAATGCCTTACTTTCCAGATTGGCCTAATTCCGAtgcgatggggtctt
tcaaagatacaaactaaaataaaaacaagcctttcgctgtgacgcaatga
agataccaaagtgtcaactaaactgagagatttgatgcactgaaccaatt
gaaccaaaacattaaggcggcaatcaaaaatatgttccattcaggtccta
aaacatcttcaaatccagtcggtcggtcggtagtaaattttgtcgaattt
ttaagatctagtaaattccgatgaatcaagtcggcaatcaacagaatctt
atgccgccatctttaatttgccaaactaaatgtgcgcgccatttgctttg
gttttaggtcacttttttggtttttcttaacCCAATGACGTCCACGCTGG
ATaggatcatcggaacggctcgatgacggatcgatatgtgatcgatggat
tacttaacaatccggataggagatcgatagaggatcgatactcaagattt
ttttaagcttatgattagTTATCGATTATTTATCGATCTATCATCGATCT
TTTATCGATCTTATTGACCCTATCGACTCATACTCAGttgacaaatcgat
taacgatcgatgacgaatcggtatactcgattgaaatactagctcaataa
tggatcaacgaaggatcgatactcaagaatTTTTAATGGccgaatcttcc
atcgatctcctatccagatcgttaagtaatccatcgatcacatatcgatt
cgtcatcaagCCGTTCctatgatcgatcctatcgagcgcggacgtctggc
ttaaggcggcaatcacaaatatcttcattttgcgtACTCGTTAgatctaa
aaagtgagttggtcggtcggtcgatcagtagtaaaaattttcgggttttc
ttaaaattggtctGTGAGGCGGTAAAAGGTAAAAGGGTGTTAACTGAGAC
GGCGGGAGGCCCAATCGCGTGTATCGTTTTGCGTGGTTTCAGATTATGAA
GTTTAAACACTGTGACCTTTGACACATAATGGCAtgtgtaatgataaaca
aagttaaTATGCTTTGAATGTGCTATAAATCACTCACAAAAAtcagcaat
aataaaatttttgagcaaaggaaacgtcatcaaaactaaaagtcCAACGA
ATTTACCGAAGTCGGTGTCGGGCGACgcaaaacgaagatatttgtgattg
ccgcctaaagATATGTCATAGaaattggttatcgaagtaatgaattggtt
atcgaagtaatgaattggttatcaaagttgtcaaagttatcgaaagtaat
caataacaatcaaagtactcgaGCGGTTATCAAGTCTTTGAAGGGTTGTt
aagcagttagtcacactagcgtcctgcCAAAATGCGTATCTAAGATTtat
aatgctgcgaaagcgctatattgtttacttgactctcaagcaaaaaaatg
tgccgcaaaacttctaaagggattcatgaaaaaataacccggcgcttttt
aatgaaattaacgttttcaaaaactttgagaaattgcctaaaatttgagc
catagatgaaaaaatttgagccaagccaaccttgaaaactaatttgaaga
tcaacttcccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgattacttcgatca
ttatcgattacttcgataatcgaatttatcgattagtaccgtctggtgcT
ATTTATGTTAAGGGCAATATTAACGACTCCAGAAGTCCCCAACTTTTGTT
GAtctcaaaccaaatgtttcatttgaacccttctaacttttctaaatttt
tcttttttcttttgtcttttcaaTTCAATCGAAAGATATTGGACACGAGA
GGCTAGGTAGGCTTTTCCAACGTTTTTTAGTTTTCTACAAGAAGAGACGA
AAAGACGGGGGCTAACGAATGAGTTACATTACAATTTGTTACCGTCAATt
tgtttcattcaaaatgacggatgccgattggagaattagagaatgtgccc
gctgcctaaccgcttattgcccgatgggattaacaaataacataacaagt
gtgtaacttgccgcgcgaccGACGAGTGATGTTCAAAGTTTGATGCCTTT
TTCCCTCGAGGGCAAAATTTTATCAGTGTAACATTTTCATGAATTGTAAT
GGCTTTCCTTCAGTCAAGGTTGGAATTCTTTCCTCAATACTCGTgtgtat
ttgtattttttacgACATACCCTACTGTTGTTATTAAAATATAttcatta
ttgaaaaattaCCTACTTTACTATGTGAAACTCGTTTTATTGTAAATGAT
AAATGTTTATACATCTCATGAGAAATACATATGTTAATTACCTTACACTA
TCAGAAATTTACTTGCCCCcggatttttcaaagaaacaaaaaatttactt
tgtGGTGAAAAGCCTACCTAGCCTCCAATATCTTTCAACTGAGTtgttat
tttcgaaaaagaatttCACAGCTGACATGGGCAAGGATTGAAGTTTCTCA
AGCTCAAAAAAGGTGGTTATGGCATTGCTAgataaaaagctgattttttg
gacctacctggaggacCTTTAATTTGActgttgtccgttcgtctgttaca
agcttttctcgggatcggctcattattttttttaattttttgcacagtga
tgcaaagtggtgattcccaaaaagtgacgtagcctaattttcaaaaaaaa
gattttttgggcaaatttgggccaaagagtgcctaaaaatgggattttta
gactttgtgtgaaattgcttcataagttttttctgattttatgcatagag
atggagggcaaggttctctaaaaagtggctgaagcagtttttttcggaaa
atttgtttttggccgtaaaaatctgattttcttatttggggaaattccct
tcatttttagggaaaaagagcatttctggcgattggatcgatattctttt
ctgattttttgcaatatttaaaatctgaagtccaattttcaatcaatata
attttttggggcaaatttgggccaaaatgtgcctaaaaatggggttttct
ggactttgtgtgGAAATGCTTCATtacttctttcaaattttttggacaaa
ggcaaggttctctaaaacgcAACTCAAGCCtttttttccagaattttttt
ttggccgtaaaaatcggattttcttatttggggaaattcccttatataTA
TGTCATTTCTAGGAAAAAATTTTACTGccttaaaatgttgttttttttgc
tgccataaaaaaaaaaaacaagcaaagttTAATCCTAAAAAAGGGATAAG
TTAAGTTCATCACTTTTTATTTCTAGATTTATGTCAGTGGAAGATTATTA
AAGGAAAGAAGATGAACAAAAGAAacgtgaaaaagaaatttgcacAATCG
TTCCAGGGTAATTTTGGTAAGAATGATTCCGATTCAAAGGAAGGAAATGT
GCCTTATGCCATACTCAAAGCTGCTCGTCACAGTGGTCAACTAAATCTTT
CTGGTCGCTCACTTACCTCCGTCCCAGACAAAGTTTACAGGATCAATATT
GATGTCCCAGATGAGGCAAAAAGTACATCTATGGCTGACACTGATGAGAG
ATGGTGGGATCAAGTTGATTTGCGAAAACTGATTCTTGCCTCCAATCAAC
TGTCAGAGATTTCTGGAGAAATCAAGAATTTGCCAGTCTTGAATGTTTTA
GATATCCATGATAATGTGATTGAAAAACTTCCTGAAGAAATCGGAGAGCT
AAAGGAGCTTTCAAAACTTCATTTGAGTCATAACAAACTCTCATGTTTTC
CAAATTCATTTTGTAATCTTGTTGCATTGAAATCCTTGTTGTTGTCAGGT
AATGTCATTGAAAAACTTCCTGAAGATATTGGATATTTAGTAAATGTTGA
GGAGCTTGACTTGGCTCAGAATAAGTTGACTGGTCTTCCTGAAAGCATTG
GCAACATGAAATGCTTGAAAAAGCTCAATcttacaaaaaatcaaatcact
GATCTACCTGTTACATTTGAATACTTGACTGGTTTACGTGATTTAGATTT
AAGCTCAAATAAGTTGACAACACTTCCATCTGGCTTTGGGAAATTGACAT
CACTTGAAATTGTTGAATGTCGATATAATTTGATAAGTTCAATTTCTAAG
TTTACAGAAAGTGCAAACATCAAACAACTTTTTCTTGGCTATAATCGTTT
GCGAGAACTTCCGGAAGATATCTTTGGGGATTTCCCACAGTTGGTGTCAT
TAGATTTGAGAGACAACTCAATCTCCAAACTTCCAGAAAGTCTTCTTGAA
CTGAAGATGCTTGAAAGGATTGACCTTACAAATAATAACATTTCTGGTTT
GCCGTATGTTTTGGGCCATATGAAATTGAAAGCTCTTACTTTGGATGGAA
ATCCTATGCGTGGAATTAGGCGTGATATCATAGCTAGAGGAACTCAAGCA
ATTCTTGAATATTTGCGTAGCCGTATGCCTATCCCTGAGCCTAAAGAAGA
GATAGTTGAAAGTCCCAAGAAGAGTGAAACTGTTGCTGACAATAACTCAA
CCAATGAATCACAAATTAAACCAGCACGTTTCGATGGAGAATCAAAAGTT
CAAAGCAGTGACGCCAGTAAGCAAAACCATCCCAAAGAACCTAGCAAAGC
TGTTGTTGATCAATATCTCATTGCAACCACCAAAGTATTAACTCATAACA
ATGGCTCTTCAAACATTCCTGAATCTGTTTGGCTCCCTGGTGCAAAAATC
TCTAACATCAATTTCTCCAAAAATACACTATCAGAGTTTCCTTCAGAAAT
TATGCAATATAAAGAAAGTTTGTCTGAGATTAACATTTCTCACAACAGAA
TAACTGCACTACCAGCATTGATTGGTGATTTATCCAAGCTTACATTTATC
GATCTCAGTAACAACATGCTACAGGCATTACCAGAAGAAATCAAAGTTTT
ACCACATTTGCTTCAAATCGTACTTTCCTTCAACAGATTCACTACCATGC
CCAAGCCCATGTTTGAAATGAAAAGTCTCCAAACGATTTTAATGGCAAAT
AACCAGTTAAGTGATATAGATGTTGATGGACTTTTACAGTTGAAAACTGT
GCAAACACTCGATCTCTCCAATAATAACATTGCCAGAATACCTCCCCAAC
TTGGAAATGTTGAATGGCTAAAATCGCTCAACTTAGATGGAAACTCTTTC
CGATCACCTCGTCCACAAATCTTGATGAAAGGTACACAATTTATTCTAGG
ATATCTCCGAGATAGAATCCCTACTTGAACAGATTGAACTGAAGAGATTG
ATTTCTGATGAGCCGTGATAAAATgttcagttttttttcagatttttagt
CATTATTTCCCTGATCTTATTGAGTAGACATTAGTTTTGTGGACAAATTT
TCAGAATCAACTTTTAGTTGTTTCTTTATTGCAATATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020106-exon-sc0000349-1491911889:175005..175262 | TCONS_00020106-exon-sc0000349-1491911889:175005..175262 | Clytia hemisphaerica | exon |
| TCONS_00020106-exon-sc0000349-1510915933:175005..175262 | TCONS_00020106-exon-sc0000349-1510915933:175005..175262 | Clytia hemisphaerica | exon |
| TCONS_00020106-exon-sc0000349-1575043694:175005..175262 | TCONS_00020106-exon-sc0000349-1575043694:175005..175262 | Clytia hemisphaerica | exon |
| TCONS_00020106-exon-sc0000349-1491911889:187231..189345 | TCONS_00020106-exon-sc0000349-1491911889:187231..189345 | Clytia hemisphaerica | exon |
| TCONS_00020106-exon-sc0000349-1510915933:187231..189345 | TCONS_00020106-exon-sc0000349-1510915933:187231..189345 | Clytia hemisphaerica | exon |
| TCONS_00020106-exon-sc0000349-1575043694:187231..189345 | TCONS_00020106-exon-sc0000349-1575043694:187231..189345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000349 | supercontig | sc0000349:175005..189345 + |
Blast
BLAST of TCONS_00020106 vs. Swiss-Prot (Human)
Match: LRC40 (Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1) HSP 1 Score: 427.943 bits (1099), Expect = 5.197e-139 Identity = 252/631 (39.94%), Postives = 385/631 (61.01%), Query Frame = 3
Query: 324 AQSFQGNFGKNDSDSKEGNVPYAILKAARHSGQLNLSGRSLTSVPDKVYRINIDVPDEAKSTSMADTDERWWDQVDLRKLILASNQLSEISGEIKNLPVLNVLDIHDNVIEKLPEEIGXXXXXXXXXXXXXXXXCFPNSFCNLVALKSLLLSGNVIEKLPEDIGYLVNVEELDLAQNKLTGLPESIGNMKCLKKLNLTKNQITDLPVTFEYLTGLRDLDLSSNKLTTLPSGFGKLTSLEIVECRYNLISSISKFTESANIKQLFLGYNRLRELPEDIFGDFPQLVSLDLRDNSISKLPESLLELKMLERIDLTNNNISGLPYVLGHMKLKALTLDGNPMRGIRRDIIARGTQAILEYLRSRMPIPEPKEEIVESPKKSETVADNNSTNESQIKPARFDGESKVQSSDASKQNHPKEPSKAVVDQYLIATTKVLTHNNGSSN-IPESVW--LPGAKISNINFSKNTLSEFPSEIMQYKESLSEINISHNRITALPALIGDLSKLTFIDLSNNMLQALPEEIKVLPHLLQIVLSFNRFTTMPKPMFEMKSLQTILMANNQLSDIDVDGLLQLKTVQTLDLSNNNIARIPPQLGNVEWLKSLNLDGNSFRSPRPQILMKGTQFILGYLRDRIPT 2207
Q + F D +VP +LKAAR SGQLNLSGR+L+ VP V+RIN+D+P+EA ERWW+Q DL KLI+++N+L ++ +++ LP L VLDIHDN + LP I EL+ L KL++SHNKL P NL LK L L N + + E L N+E+LDL+ N LT +P S ++ L +LNL+ N++ LP + L+ LD +SN L T+P + SLE++ R N + + +F + +K+L +G N++ L + ++ LDLRDN + +P+ ++ L+ LER+DL+NN+IS LPY LG++ LK L L+GNP+R IRR+II++GTQ +L+YLRS++ + DG S+ S+++ + PS++ V+ + I T K+L +++ + IP+ V+ + +++INFSKN L E P +++ KE +S++++S N+++ + + L KLTF+DL NN L +LPEE++ L L I LSFNRF +P+ ++ + +L+TIL++NNQ+ +D + ++ + TLDL NN++ +IPP+LGN L++L LDGN FR PR ILMKGT IL YLRDRIPT
Sbjct: 9 GQDLRAGFKAGGRDCG-TSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI---------------------------------KDDGPSQ---SESATETAMTLPSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFISLELCVLQKLTFLDLRNNFLNSLPEEMESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT 602
The following BLAST results are available for this feature:
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