TCONS_00020102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020102
Unique NameTCONS_00020102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020102 ID=TCONS_00020102|Name=TCONS_00020102|organism=Clytia hemisphaerica|type=transcript|length=1466bp
cagACAATCAACAACAAATGTTGCAACAAATGATCAgccagcaacaacaa
caacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAACAGCA
AGCTGGCAATGACATGCAGAATATGAGGAATAACATGATGCAACAACGAC
CCAACAACTTTCCACCTTCCATACAACAGTTGAACAACAGTAACATTCAA
TTACAACAACAGTTACAACGAAGTCGTCAACAACAATTCCTTCAACAACA
TATCAAAAACCGTATGAATGCATCGAATATGCAACGCCAATTATCATCAG
GTAGCAATGCTTCAAATAGTTCGGGCGGTGGTGCTCCCATGATGGCCGGA
AATGATTTCACGAACCAGCAACAGGGTGGTAACAATATGATGAATAActt
ccaacaacaacaacaacaacaacaaaacccTCAACAAATACAAATGATGC
AACAACAATTTAACCAGCAACAACAAAATACTAATAATAATCAATTCAAC
CCTGGCGGACAAAACCCTTTCTCAATGTAAAACTGTTCAAGGAAATAATT
GCTGTCGTTCATGATGTATATGGTAATAGATGGCTTGATAACAGCTATCG
TTGTTCGGAAAATAAGAGTCCCTTTTCCACAAAATGACTATTTTACTTAA
GCTTTCTCATTGTGAAGCTTTTGTCGACAAGGGACATTTACTGGCATTGT
ACTGTTCGATGTTCAAGCTCTTGGAGATTAATGACCCACAATCGGACCAC
ATCTGAGGCGGTGTTACTCATTGGTGGAAACCCCGTTATACGCCCCGTTT
TACGCCCCAGCAACGAGTTTCCACTTCTTTGCTCGAGCAACCCGCTCCGC
AATTAATCGTAGTAATGCTTTATGGAGGTAAAGCTTTTGTTAACGACACA
ATAACTTTAATAGATAATTAATTCCTGTCTGGAAAACATAATTCAGAATT
CTGTTTGCGACAGACCATGCGAGGAGAGTATCTAATGTGATTGTGAGACT
AAATACCCCTTTGTAAGTAGTGGTTTCATAAGATAATACGATATATCGAC
ACGATTTATTTTGTATTTAGACTAGTGAATTTTGGCGGAGCCTCATCTAT
TTATCAACAATCTCTCAAAATTGAGCCTCAGATTATATTTTAAAAGCTCT
GGAAGTTGCTATGTATTATCAAAAAGGAATGCAGTTCCTGTTTTTAGTCT
AAGCATACGCTCATAATTTGATGGggtgagatggagtttttacaagctct
tatttgatttggttggtcgttaaccagtaataaaacaattttgttacttt
ttctaaagagcgcgtcatttttattacttctattacttcaaatgaccaat
tattaaagtatcttataaaaactccatctcatctgaattTGATGGGCCAG
TCAAACGGTTTCAGTTTTAAAAGGTAGATTCTTCTTGGAATATGGTAAAG
TTATTTGCTTAGATTT
Run BLAST on NCBI

transcript from alignment at sc0000349:67374..71175+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020102 ID=TCONS_00020102|Name=TCONS_00020102|organism=Clytia hemisphaerica|type=transcript|length=3802bp|location=Sequence derived from alignment at sc0000349:67374..71175+ (Clytia hemisphaerica)
cagACAATCAACAACAAATGTTGCAACAAATGATCAgccagcaacaacaa
caacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAACAGCA
AGCTGGCAATGACATGCAGAATATGAGTAAGGNCAACAAGTTGCACCGAA
CGTGAGTGTTGTTATACTTTACTTACTACTAAAGTGTTTTTATACTCCTT
GACATTTTATTGACTTTATAATAAATGATGGTCATTTTGTTCAGCTAAAG
TTTTGCGAAAAAGGAAGTCTTACTCACTTGTCCGTCCAGTTTCACTGCga
tatttttttacaagaactttATTTCCCAGCCTACACCACATGTCACAACC
CTTTTCCTACATCtgttccactttgcgactttctCAGATGTTTGGAGTCA
AAGTTTtccgggctctaaacattcgaaaaaactTGTCATCAAAACTTAAC
TTCTGCTTAAATAGTGGATGGACTATACCTTCTAATTATTCTTGAAACAA
ATTTTCANCAGTTTTGTTACCTCATACTCACAAATagtgaaatttgattg
gttcctTTTATGTATTGTCCGATGGCTAGTGATTCATATAACATAGTTGT
TTCAAGGACTACCTTTCCAAATATCTCCCAAAAGAATTTCTGTTCCAAAA
GAAAGGCCCGTTCTCGAATTTACCacataattcatgatatgcaccactgc
aatgtcttctgacatcacatcacagacccaatagctgattggttgtaagt
gacgtaaaataagtcaataagccactttcaaccaatcagctgttgtgtcc
gtggaagacattgcaatggttaTGAATTGACGCCGTTCCATCCTAGTAAA
CTCAAACCCATTCCCCTTGTAGTAAAGTTTATAATTAGAGTCAACTCACT
CTAagtcgaacctctattattcgaacctTTCTGTAAAAAGAACTAAAATG
TTGGTCCCCTTAGCTGGAAaatggtttaaattactctctgtaattcgaat
ctttctataattcaaagaaaatcccatgaagatcgaattagagggaGTCA
ACTGTACTTCATCGTGGCTTGAAGCACGAGTTTTGCGTAAGAccaaaggt
aaaaaaaaacttttgagcaAAGCCACGGTAAACTCCCAATATGAATGTGA
GTTGGTCGGTAACTTANCTCCACCCCAAATCTCttccatttcattttatt
ttttctcattcAGACAATCAACAACAAATGTTGCAACAAATGATCAgcca
gcaacaacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAAC
AGCAAGCTGGCAATGACATGCAGAATATGAGTAAGAACTGTCACAGTTTT
GTTACCTCATACTCACAAATagtgaaatttgattggttcctTTTATGTAT
TGTCCGATGGCTAGTGATTCATATAACATAGTTGTTTCAAGGACTACCTT
TCCAAATATCTCCCAAAAGAATTTCTGTTCCAAAAGAAAGGCCCGTTCTC
GAATTTACCacataattcatgatatgcaccactgcaatgtcttctgacat
cacatcacagacccaatagctgattggttgtaagtgacgtaaaataagtc
aataagccactttcaaccaatcagctgttgtgtccgtggaagacattgca
atggttaTGAATTGACGCCGTTCCATCCTAGTAAACTCAAACCCATTCCC
CTTGTAGTAAAGTTTATAATTAGAGTCAACTCACTCTAagtcgaacctct
attattcgaacctTTCTGTAAAAAGAACTAAAATGTTGGTCCCCTTAGCT
GGAAaatggtttaaattactctctgtaattcgaatctttctataattcaa
agaaaatcccatgaagatcgaattagagggaGTCAACTGTACTTCATCGT
GGCTTGAAGCACGAGTTTTGCGTAAGAccaaaggtaaaaaaaaacttttg
agcaAAGCCACGGTAAACTCCCAATATGAATGTGAGTTGGTCGGTAACTT
ATttactttaaactttttgaaaaactctTTATTACACATTCCTTCGTTAC
CATAACAACCATAGGGAATAACATGATGCAACAACGACCCAACAACTTTC
CACCTTCCATACAACAGTTGAACAACAGTAACATTCAATTACAACAACAG
TTACAACGAAGTCGTCAACAACAATTCCTTCAACAACATATCAAAAACCG
TAAATTCCCAATTCCCATTTCCCCTCCTTTCCCAGTTTGCCAGTTCCCAA
TTTTCCCCCTAAATTCCTTTTATCATTTTCCCGTTTCCCCTCGCACCCTA
GTTCTTGCGTTTCGTACATCCAATCGAATCTTTAAACTCCCTTGTTTATG
AGCACCTCCAATGTGATATGTCTGAAAACCCCTCTGATCGATCATATACT
CCCAAACTCTCTGCTTGACACACTTCTACCTTACCAAAAAATCTCTCAAC
CCGGCATCCTTGAAACTACAGATAAACTCCCCGATGCATTTTGTTGACGG
ATAATAGTGACAAACCTGACTTATAAAATGATGCTCTCAAAGGCAAGAAT
ACAAAAGGACTTTGAAACTAATGCCCAATCCTTTTTCTCACCTACAGGTA
TGAATGCATCGAATATGCAACGCCAATTATCATCAGGTAGCAATGCTTCA
AATAGTTCGGGCGGTGGTGCTCCCATGATGGCCGGAAATGATTTCACGAA
CCAGCAACAGGGTGGTAACAATATGATGAATAActtccaacaacaacaac
aacaacaacaaaacccTCAACAAATACAAATGATGCAACAACAATTTAAC
CAGCAACAACAAAATACTAATAATAATCAATTCAACCCTGGCGGACAAAA
CCCTTTCTCAATGTAAAACTGTTCAAGGAAATAATTGCTGTCGTTCATGA
TGTATATGGTAATAGATGGCTTGATAACAGCTATCGTTGTTCGGAAAATA
AGAGTCCCTTTTCCACAAAATGACTATTTTACTTAAGCTTTCTCATTGTG
AAGCTTTTGTCGACAAGGGACATTTACTGGCATTGTACTGTTCGATGTTC
AAGCTCTTGGAGATTAATGACCCACAATCGGACCACATCTGAGGCGGTGT
TACTCATTGGTGGAAACCCCGTTATACGCCCCGTTTTACGCCCCAGCAAC
GAGTTTCCACTTCTTTGCTCGAGCAACCCGCTCCGCAATTAATCGTAGTA
ATGCTTTATGGAGGTAAAGCTTTTGTTAACGACACAATAACTTTAATAGA
TAATTAATTCCTGTCTGGAAAACATAATTCAGAATTCTGTTTGCGACAGA
CCATGCGAGGAGAGTATCTAATGTGATTGTGAGACTAAATACCCCTTTGT
AAGTAGTGGTTTCATAAGATAATACGATATATCGACACGATTTATTTTGT
ATTTAGACTAGTGAATTTTGGCGGAGCCTCATCTATTTATCAACAATCTC
TCAAAATTGAGCCTCAGATTATATTTTAAAAGCTCTGGAAGTTGCTATGT
ATTATCAAAAAGGAATGCAGTTCCTGTTTTTAGTCTAAGCATACGCTCAT
AATTTGATGGggtgagatggagtttttacaagctcttatttgatttggtt
ggtcgttaaccagtaataaaacaattttgttactttttctaaagagcgcg
tcatttttattacttctattacttcaaatgaccaattattaaagtatctt
ataaaaactccatctcatctgaattTGATGGGCCAGTCAAACGGTTTCAG
TTTTAAAAGGTAGATTCTTCTTGGAATATGGTAAAGTTATTTGCTTAGAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011299XLOC_011299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020102-exon-sc0000349-1491911889:67374..67499TCONS_00020102-exon-sc0000349-1491911889:67374..67499Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1510915933:67374..67499TCONS_00020102-exon-sc0000349-1510915933:67374..67499Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1575043694:67374..67499TCONS_00020102-exon-sc0000349-1575043694:67374..67499Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1491911889:69438..69572TCONS_00020102-exon-sc0000349-1491911889:69438..69572Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1510915933:69438..69572TCONS_00020102-exon-sc0000349-1510915933:69438..69572Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1575043694:69438..69572TCONS_00020102-exon-sc0000349-1575043694:69438..69572Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1491911889:69971..71175TCONS_00020102-exon-sc0000349-1491911889:69971..71175Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1510915933:69971..71175TCONS_00020102-exon-sc0000349-1510915933:69971..71175Clytia hemisphaericaexon
TCONS_00020102-exon-sc0000349-1575043694:69971..71175TCONS_00020102-exon-sc0000349-1575043694:69971..71175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:67374..71175 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.4673	3.86226	1.82064	1.5276	5.70207	4.17041	4.43863	5.12024	9.93365	3.12594	11.0583	2.55063	2.53723	3.28088	2.2912	2.77615	2.45975	2.97407	11.8226	3.22897	3.33046	3.23077	13.4145	3.30636	15.1572	15.857	2.01511	2.37434	13.7938	13.77
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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