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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020089 ID=TCONS_00020089|Name=TCONS_00020089|organism=Clytia hemisphaerica|type=transcript|length=728bp
NNTGTTGTTGTTCTTCGATCTCTCCGACGACGTCATCGGCAAGTTGTAAA
ACTAACAACTGGCAATTATGATTGGCTTCCTTTCGCAATTTGATCTGCTC
TATATCATCTATCGCGTTGAAGGTTTGGTTCAGTACTTTATCCAGTGCTA
GTTTGATAGTGCGCTCTTTGACGGTGCGTGAACGCGCTTGTACTTTGTAC
GAAGGAATCGAAGCGCTAGGATACTCAACTTCAGGTAACTTTTTCAAATC
AGCGTACCAATTATGACATCGTTCGTAGGTCGAGTCAAGAAATCCGCGac
gtttcaattttttgactttttcttttcgtTTCTTTTTGACAGGTTTGACG
CTCTCTTCCACGATTGGGTTTTCCGGCGAAAGTAACTCGTCTTGACTGTT
AAACTGAGGTATATGAAAATCATAAACACTCAAGTCAATAAAATGTTCTT
TCTTTCGATGATTTCTGGAAGCGCTCTTCGTCGATACTTTtccctttttt
gttttctttctttcaattCGTTCAACTGTATTTTCGAGTGCAAGTTTGGT
GGGACGTTTAGAGATTTTCCGACGACGCGGAGTCTCTTCATTTGGATTCT
GATAACTCTTCGAAGCTTTGATAACAGAGAAGGACTTATGTTCTTCGAGC
GTGTACGCGTGCACATCAAACTCTCCTCGCGCATGCTCGTCACCGCTCTC
ATCTTCTGATGATGCAGCTGATGTTTTG Run BLAST on NCBI protein sequence of TCONS_00020089-protein >TCONS_00020089-protein ID=TCONS_00020089-protein|Name=TCONS_00020089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
KTSAASSEDESGDEHARGEFDVHAYTLEEHKSFSVIKASKSYQNPNEETP
RRRKISKRPTKLALENTVERIERKKTKKGKVSTKSASRNHRKKEHFIDLS
VYDFHIPQFNSQDELLSPENPIVEESVKPVKKKRKEKVKKLKRRGFLDST
YERCHNWYADLKKLPEVEYPSASIPSYKVQARSRTVKERTIKLALDKVLN
QTFNAIDDIEQIKLRKEANHNCQLLVLQLADDVVGEIEEQQX Run BLAST on NCBI transcript from alignment at sc0000348:186821..187548 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020089 ID=TCONS_00020089|Name=TCONS_00020089|organism=Clytia hemisphaerica|type=transcript|length=728bp|location=Sequence derived from alignment at sc0000348:186821..187548 (Clytia hemisphaerica)
CAAAACATCAGCTGCATCATCAGAAGATGAGAGCGGTGACGAGCATGCGC
GAGGAGAGTTTGATGTGCACGCGTACACGCTCGAAGAACATAAGTCCTTC
TCTGTTATCAAAGCTTCGAAGAGTTATCAGAATCCAAATGAAGAGACTCC
GCGTCGTCGGAAAATCTCTAAACGTCCCACCAAACTTGCACTCGAAAATA
CAGTTGAACGaattgaaagaaagaaaacaaaaaagggaAAAGTATCGACG
AAGAGCGCTTCCAGAAATCATCGAAAGAAAGAACATTTTATTGACTTGAG
TGTTTATGATTTTCATATACCTCAGTTTAACAGTCAAGACGAGTTACTTT
CGCCGGAAAACCCAATCGTGGAAGAGAGCGTCAAACCTGTCAAAAAGAAa
cgaaaagaaaaagtcaaaaaattgaaacgtCGCGGATTTCTTGACTCGAC
CTACGAACGATGTCATAATTGGTACGCTGATTTGAAAAAGTTACCTGAAG
TTGAGTATCCTAGCGCTTCGATTCCTTCGTACAAAGTACAAGCGCGTTCA
CGCACCGTCAAAGAGCGCACTATCAAACTAGCACTGGATAAAGTACTGAA
CCAAACCTTCAACGCGATAGATGATATAGAGCAGATCAAATTGCGAAAGG
AAGCCAATCATAATTGCCAGTTGTTAGTTTTACAACTTGCCGATGACGTC
GTCGGAGAGATCGAAGAACAACAACANN Coding sequence (CDS) from alignment at sc0000348:186821..187548 >TCONS_00020089 ID=TCONS_00020089|Name=TCONS_00020089|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000348:186821..187548 (Clytia hemisphaerica)
AAAACATCAGCTGCATCATCAGAAGATGAGAGCGGTGACGAGCATGCGCG
AGGAGAGTTTGATGTGCACGCGTACACGCTCGAAGAACATAAGTCCTTCT
CTGTTATCAAAGCTTCGAAGAGTTATCAGAATCCAAATGAAGAGACTCCG
CGTCGTCGGAAAATCTCTAAACGTCCCACCAAACTTGCACTCGAAAATAC
AGTTGAACGaattgaaagaaagaaaacaaaaaagggaAAAGTATCGACGA
AGAGCGCTTCCAGAAATCATCGAAAGAAAGAACATTTTATTGACTTGAGT
GTTTATGATTTTCATATACCTCAGTTTAACAGTCAAGACGAGTTACTTTC
GCCGGAAAACCCAATCGTGGAAGAGAGCGTCAAACCTGTCAAAAAGAAac
gaaaagaaaaagtcaaaaaattgaaacgtCGCGGATTTCTTGACTCGACC
TACGAACGATGTCATAATTGGTACGCTGATTTGAAAAAGTTACCTGAAGT
TGAGTATCCTAGCGCTTCGATTCCTTCGTACAAAGTACAAGCGCGTTCAC
GCACCGTCAAAGAGCGCACTATCAAACTAGCACTGGATAAAGTACTGAAC
CAAACCTTCAACGCGATAGATGATATAGAGCAGATCAAATTGCGAAAGGA
AGCCAATCATAATTGCCAGTTGTTAGTTTTACAACTTGCCGATGACGTCG
TCGGAGAGATCGAAGAACAACAACAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020089-exon-sc0000348-1491911889:186821..187548 | TCONS_00020089-exon-sc0000348-1491911889:186821..187548 | Clytia hemisphaerica | exon |
| TCONS_00020089-exon-sc0000348-1510915933:186821..187548 | TCONS_00020089-exon-sc0000348-1510915933:186821..187548 | Clytia hemisphaerica | exon |
| TCONS_00020089-exon-sc0000348-1575043694:186821..187548 | TCONS_00020089-exon-sc0000348-1575043694:186821..187548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:186821..187548 . |
Blast
The following BLAST results are available for this feature:
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